BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645350|ref|NP_207524.1| hypothetical protein
[Helicobacter pylori 26695]
(101 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea) 29 0.092
pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit ... 28 0.16
pdb|1M6N|A Chain A, Crystal Structure Of The Seca Transloca... 27 0.46
pdb|1JSA| Myristoylated Recoverin With Two Calciums Bound... 26 0.59
pdb|1REC| Recoverin (Calcium Sensor In Vision) 26 0.59
pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant,... 26 0.59
pdb|5PAL| Parvalbumin (Alpha Lineage) 25 1.0
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal ... 25 1.0
pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritim... 25 1.3
pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec... 24 2.3
pdb|1F3G| Phosphocarrier Iiiglcfast >gi|2914331|pdb|1F3Z|... 23 3.9
pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagas... 23 3.9
pdb|1JI7|A Chain A, Crystal Structure Of Tel Sam Polymer >g... 23 3.9
pdb|1GLB|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complex ... 23 3.9
pdb|1AA7|A Chain A, Influenza Virus Matrix Protein Crystal ... 23 5.0
pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-S... 23 5.0
pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase... 23 5.0
pdb|1BJT| Topoisomerase Ii Residues 409 - 1201 >gi|163327... 23 5.0
pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruv... 23 5.0
pdb|1EA3|A Chain A, Influenza Virus M1 Protein >gi|14278293... 23 5.0
pdb|1H6L|A Chain A, Beta-Propeller Phytase In Complex With ... 23 6.6
pdb|2POO|A Chain A, Thermostable Phytase In Fully Calcium L... 23 6.6
pdb|1QLG|A Chain A, Crystal Structure Of Phytase With Magne... 23 6.6
pdb|1DPS|A Chain A, The Crystal Structure Of Dps, A Ferriti... 23 6.6
pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cere... 22 8.6
pdb|1CBU|B Chain B, Adenosylcobinamide KinaseADENOSYLCOBINA... 22 8.6
>pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea)
Length = 318
Score = 28.9 bits (63), Expect = 0.092
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 39 IKNALEGENDPSNKAGKTLDLIVGFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLKE 98
+KNA+E + + K LD ++ + Q FDE + L QEY Q + ++K
Sbjct: 28 VKNAIETADGALDLYNKYLDQVIPW-----QTFDETIKELSRFKQEYSQAASVLVGDIKT 82
Query: 99 IL 100
+L
Sbjct: 83 LL 84
Score = 23.9 bits (50), Expect = 3.0
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 33 ANMVLDIKNALEGENDPSNKAGKTLDLIVGFKKEYPQDFDELFEILKELIQEYEQNPDEI 92
A+ LD+ N + P +T+ + FK+EY Q L +K L+ + + E
Sbjct: 35 ADGALDLYNKYLDQVIPWQTFDETIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEA 94
Query: 93 KQNLKE 98
Q + E
Sbjct: 95 TQTVYE 100
>pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit Skeletal Muscle
Sarcoplasmic Reticulum At 2.4 A Resolution
Length = 367
Score = 28.1 bits (61), Expect = 0.16
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 60 IVGFKKEYPQDFDELFEILKELIQEYEQNPD 90
IV F +E D E EILK + Q+ NPD
Sbjct: 251 IVAFAEEADPDGYEFLEILKSVAQDNTDNPD 281
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 26.6 bits (57), Expect = 0.46
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 24 SSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLIVGFKKE--YPQDFDEL-FEILKE 80
S+P+QS ++ V + +EG N S K D ++ ++E Y Q F+ + E L+E
Sbjct: 566 STPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDSENLRE 625
Query: 81 LIQ 83
+++
Sbjct: 626 IVE 628
>pdb|1JSA| Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
pdb|1IKU| Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 202
Score = 26.2 bits (56), Expect = 0.59
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 38 DIKNALEGENDPSNKAGKTLDLIVGF------KKEYPQDFDELFEILKELIQEYEQNPDE 91
D K+ E EN P +A K I GF K ++F E KE+++ + P +
Sbjct: 137 DTKHLPEDENTPEKRAEK----IWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQK 192
Query: 92 IKQNLKE 98
+K+ LKE
Sbjct: 193 VKEKLKE 199
>pdb|1REC| Recoverin (Calcium Sensor In Vision)
Length = 201
Score = 26.2 bits (56), Expect = 0.59
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 38 DIKNALEGENDPSNKAGKTLDLIVGF------KKEYPQDFDELFEILKELIQEYEQNPDE 91
D K+ E EN P +A K I GF K ++F E KE+++ + P +
Sbjct: 136 DTKHLPEDENTPEKRAEK----IWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQK 191
Query: 92 IKQNLKE 98
+K+ LKE
Sbjct: 192 VKEKLKE 198
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 202
Score = 26.2 bits (56), Expect = 0.59
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 38 DIKNALEGENDPSNKAGKTLDLIVGF------KKEYPQDFDELFEILKELIQEYEQNPDE 91
D K+ E EN P +A K I GF K ++F E KE+++ + P +
Sbjct: 137 DTKHLPEDENTPEKRAEK----IWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQK 192
Query: 92 IKQNLKE 98
+K+ LKE
Sbjct: 193 VKEKLKE 199
>pdb|5PAL| Parvalbumin (Alpha Lineage)
Length = 109
Score = 25.4 bits (54), Expect = 1.0
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 5/64 (7%)
Query: 38 DIKNALEGENDPSNKAGKTLDLIVGFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLK 97
DI A+ DP K +VG K + E+FEIL + +Q+ ++ LK
Sbjct: 10 DINKAISAFKDPGTFDYKRFFHLVGLKGKTDAQVKEVFEIL-----DKDQSGFIEEEELK 64
Query: 98 EILK 101
+LK
Sbjct: 65 GVLK 68
>pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 25.4 bits (54), Expect = 1.0
Identities = 17/80 (21%), Positives = 40/80 (49%), Gaps = 1/80 (1%)
Query: 21 KRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLIVGFKKEYPQDFDELFEILKE 80
KR+ + A I ++ +K + + + S K L L K+Y Q D+L ++ ++
Sbjct: 311 KRMGTAADKAGIKDLSQMLKKMPQYQKELS-KYSTHLHLAEDCMKQYQQHVDKLCKVEQD 369
Query: 81 LIQEYEQNPDEIKQNLKEIL 100
L + + ++I+ +++ I+
Sbjct: 370 LAMGTDADGEKIRDHMRNIV 389
>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Recycling Factor, Rrf
Length = 185
Score = 25.0 bits (53), Expect = 1.3
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 49 PSNKAGKTLDLIVGFKKEYPQDFDELFEILKELIQEY 85
P + A + + I E+ + DE+FEI KE I E+
Sbjct: 149 PEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIMEF 185
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 24.3 bits (51), Expect = 2.3
Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 21 KRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLIVGFKKEYPQDFDELFEILKE 80
KR + A I ++ +K + + + S K L L K+Y Q D+L ++ ++
Sbjct: 311 KRXGTAADKAGIKDLSQXLKKXPQYQKELS-KYSTHLHLAEDCXKQYQQHVDKLCKVEQD 369
Query: 81 LIQEYEQNPDEIKQNLKEIL 100
L + + ++I+ + + I+
Sbjct: 370 LAXGTDADGEKIRDHXRNIV 389
>pdb|1F3G| Phosphocarrier Iiiglcfast
pdb|1F3Z| Iiaglc-Zn Complex
Length = 161
Score = 23.5 bits (49), Expect = 3.9
Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 11/65 (16%)
Query: 15 LKGFLFKRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLIVGFKKEYPQDFDEL 74
LKG FKRI+ Q ++ + V++ L E KA TL +V + DE+
Sbjct: 91 LKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEE-----KAKSTLTPVV------ISNMDEI 139
Query: 75 FEILK 79
E++K
Sbjct: 140 KELIK 144
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 23.5 bits (49), Expect = 3.9
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 37 LDIKNALEGENDPSNKAGKTLDLIV 61
+D++++L +DPS AGKT D I+
Sbjct: 7 IDVQSSLL--SDPSKVAGKTYDYII 29
>pdb|1JI7|A Chain A, Crystal Structure Of Tel Sam Polymer
pdb|1JI7|B Chain B, Crystal Structure Of Tel Sam Polymer
pdb|1JI7|C Chain C, Crystal Structure Of Tel Sam Polymer
Length = 89
Score = 23.5 bits (49), Expect = 3.9
Identities = 11/37 (29%), Positives = 22/37 (58%), Gaps = 2/37 (5%)
Query: 54 GKTLDLIV--GFKKEYPQDFDELFEILKELIQEYEQN 88
GK L L+ F+ P DEL+E+L+ ++++ + +
Sbjct: 45 GKALLLLTKEDFRYRSPHSGDELYELLQHILKQRDHH 81
>pdb|1GLB|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complex With Glycerol, Adp,
And The (Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc)
pdb|1GLA|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complex With Glycerol And
The (Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc)
pdb|2F3G|A Chain A, Iiaglc Crystal Form Iii
pdb|2F3G|B Chain B, Iiaglc Crystal Form Iii
pdb|1GGR|A Chain A, Complex Of Enzyme Iiaglc And The Histidine-Containing
Phosphocarrier Protein Hpr From Escherichia Coli Nmr,
Restrained Regularized Mean Structure
pdb|1GLC|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate,
Mg(Ii) And Zn(Ii)
pdb|1GLE|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate
And Zn(Ii)
pdb|1GLD|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate
And Mn(Ii)
Length = 168
Score = 23.5 bits (49), Expect = 3.9
Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 11/65 (16%)
Query: 15 LKGFLFKRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLIVGFKKEYPQDFDEL 74
LKG FKRI+ Q ++ + V++ L E KA TL +V + DE+
Sbjct: 98 LKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEE-----KAKSTLTPVV------ISNMDEI 146
Query: 75 FEILK 79
E++K
Sbjct: 147 KELIK 151
>pdb|1AA7|A Chain A, Influenza Virus Matrix Protein Crystal Structure At Ph 4.0
pdb|1AA7|B Chain B, Influenza Virus Matrix Protein Crystal Structure At Ph 4.0
Length = 158
Score = 23.1 bits (48), Expect = 5.0
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 11 LLNALKGFLFKRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLIVGFKKE 66
L + GF+F + V S R ++NAL G DP+N K + L K+E
Sbjct: 55 LTKGILGFVF---TLTVPSERGLQRRRFVQNALNGNGDPNN-MDKAVKLYRKLKRE 106
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|B Chain B, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|D Chain D, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|C Chain C, Pyruvate Kinase From E. Coli In The T-State
Length = 470
Score = 23.1 bits (48), Expect = 5.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 28 QSARIANMVLDIKNA------LEGENDPSNKAGKT 56
++ + A ++LD K LEG ND S KAG+T
Sbjct: 56 KTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQT 90
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|B Chain B, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|C Chain C, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|D Chain D, R292d Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 23.1 bits (48), Expect = 5.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 28 QSARIANMVLDIKNA------LEGENDPSNKAGKT 56
++ + A ++LD K LEG ND S KAG+T
Sbjct: 56 KTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQT 90
>pdb|1BJT| Topoisomerase Ii Residues 409 - 1201
pdb|1BGW| Topoisomerase Residues 410 - 1202,
Length = 793
Score = 23.1 bits (48), Expect = 5.0
Identities = 18/74 (24%), Positives = 35/74 (46%), Gaps = 4/74 (5%)
Query: 32 IANMVLDIKNALEGENDPSNKAGKTLDLIVGFKKEY-PQDF---DELFEILKELIQEYEQ 87
IA + D+K A E D + T ++I G ++ Y ++ ++ + KE Q+ +
Sbjct: 667 IAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLK 726
Query: 88 NPDEIKQNLKEILK 101
E + L+ +LK
Sbjct: 727 QKQEKETELENLLK 740
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|B Chain B, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|C Chain C, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|D Chain D, Structure R271l Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 23.1 bits (48), Expect = 5.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 28 QSARIANMVLDIKNA------LEGENDPSNKAGKT 56
++ + A ++LD K LEG ND S KAG+T
Sbjct: 56 KTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQT 90
>pdb|1EA3|A Chain A, Influenza Virus M1 Protein
pdb|1EA3|B Chain B, Influenza Virus M1 Protein
Length = 164
Score = 23.1 bits (48), Expect = 5.0
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 11 LLNALKGFLFKRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLIVGFKKE 66
L + GF+F + V S R ++NAL G DP+N K + L K+E
Sbjct: 55 LTKGILGFVF---TLTVPSERGLQRRRFVQNALNGNGDPNN-MDKAVKLYRKLKRE 106
>pdb|1H6L|A Chain A, Beta-Propeller Phytase In Complex With Phosphate And
Calcium Ions
pdb|1CVM|A Chain A, Cadmium Inhibited Crystal Structure Of Phytase From
Bacillus Amyloliquefaciens
Length = 353
Score = 22.7 bits (47), Expect = 6.6
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 37 LDIKNA-LEGENDPSNKAGKTLDLIVGFKKEYPQDFDELFEILKELIQEYEQ 87
+D KN L+ DP+ +D + GF + Q + + ++ E+EQ
Sbjct: 106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQ 157
>pdb|2POO|A Chain A, Thermostable Phytase In Fully Calcium Loaded State
pdb|1POO|A Chain A, Thermostable Phytase From Bacillus Sp
Length = 355
Score = 22.7 bits (47), Expect = 6.6
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 37 LDIKNA-LEGENDPSNKAGKTLDLIVGFKKEYPQDFDELFEILKELIQEYEQ 87
+D KN L+ DP+ +D + GF + Q + + ++ E+EQ
Sbjct: 106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQ 157
>pdb|1QLG|A Chain A, Crystal Structure Of Phytase With Magnesium From Bacillus
Amyloliquefaciens
Length = 355
Score = 22.7 bits (47), Expect = 6.6
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 37 LDIKNA-LEGENDPSNKAGKTLDLIVGFKKEYPQDFDELFEILKELIQEYEQ 87
+D KN L+ DP+ +D + GF + Q + + ++ E+EQ
Sbjct: 106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQ 157
>pdb|1DPS|A Chain A, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|D Chain D, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|B Chain B, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|C Chain C, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|E Chain E, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|F Chain F, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|G Chain G, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|H Chain H, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|I Chain I, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|J Chain J, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|K Chain K, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|L Chain L, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
Length = 167
Score = 22.7 bits (47), Expect = 6.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 65 KEYPQDFDELFEILKELIQEYEQNPDEIKQNLKE 98
K YP D + + LKEL Y +++++ + E
Sbjct: 105 KSYPLDIHNVQDHLKELADRYAIVANDVRKAIGE 138
>pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound Myristoylcoa
pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound Myristoylcoa
pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
And The Octapeptide Glyaskla
pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
Myristoyl-Coa And Peptide Analogs
Length = 422
Score = 22.3 bits (46), Expect = 8.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 62 GFKKEYPQDFDELFEILKELIQEYE 86
G +K +D D++FE+ K +E
Sbjct: 227 GLRKLKKEDIDQVFELFKRYQSRFE 251
>pdb|1CBU|B Chain B, Adenosylcobinamide KinaseADENOSYLCOBINAMIDE PHOSPHATE
Guanylyltransferase (Cobu) From Salmonella Typhimurium
pdb|1CBU|A Chain A, Adenosylcobinamide KinaseADENOSYLCOBINAMIDE PHOSPHATE
Guanylyltransferase (Cobu) From Salmonella Typhimurium
pdb|1CBU|C Chain C, Adenosylcobinamide KinaseADENOSYLCOBINAMIDE PHOSPHATE
Guanylyltransferase (Cobu) From Salmonella Typhimurium
pdb|1C9K|B Chain B, The Three Dimensional Structure Of Adenosylcobinamide
Kinase ADENOSYLCOBINAMIDE PHOSPHATE GUALYLYLTRANSFERASE
(Cobu) Complexed With Gmp: Evidence For A Substrate
Induced Transferase Active Site
pdb|1C9K|A Chain A, The Three Dimensional Structure Of Adenosylcobinamide
Kinase ADENOSYLCOBINAMIDE PHOSPHATE GUALYLYLTRANSFERASE
(Cobu) Complexed With Gmp: Evidence For A Substrate
Induced Transferase Active Site
pdb|1C9K|C Chain C, The Three Dimensional Structure Of Adenosylcobinamide
Kinase ADENOSYLCOBINAMIDE PHOSPHATE GUALYLYLTRANSFERASE
(Cobu) Complexed With Gmp: Evidence For A Substrate
Induced Transferase Active Site
Length = 180
Score = 22.3 bits (46), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 32 IANMVLDIKNALEGENDP 49
I MV ++ AL GENDP
Sbjct: 82 ITTMVTNLLFALGGENDP 99
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.137 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,991
Number of Sequences: 13198
Number of extensions: 20592
Number of successful extensions: 84
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 27
length of query: 101
length of database: 2,899,336
effective HSP length: 77
effective length of query: 24
effective length of database: 1,883,090
effective search space: 45194160
effective search space used: 45194160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 46 (22.3 bits)