BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645352|ref|NP_207526.1| hypothetical protein
[Helicobacter pylori 26695]
(118 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 27 0.78
pdb|1K47|A Chain A, Crystal Structure Of The Streptococcus ... 26 1.0
pdb|1G6Z|A Chain A, Solution Structure Of The Clr4 Chromo D... 25 2.3
pdb|1QKL|A Chain A, Hrpabc14.4, Essential Subunit Of Human ... 25 3.0
pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneu... 24 5.0
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kin... 24 5.0
pdb|1CTP|E Chain E, Camp-Dependent Protein Kinase (E.C.2.7.... 24 5.0
pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Ly... 24 5.0
pdb|1CMK|E Chain E, Camp-Dependent Protein Kinase Catalytic... 24 5.0
pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Ca... 24 5.0
pdb|1L3R|E Chain E, Crystal Structure Of A Transition State... 23 6.6
pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Ta... 23 6.6
pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185) >gi|... 23 6.6
pdb|1APM|E Chain E, c-AMP-Dependent Protein Kinase (E.C.2.7... 23 6.6
pdb|1BX6| Crystal Structure Of The Potent Natural Product... 23 6.6
pdb|1ATP|E Chain E, c-AMP-Dependent Protein Kinase (E.C.2.7... 23 6.6
pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subu... 23 6.6
pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0 23 8.6
pdb|1QCR|F Chain F, Crystal Structure Of Bovine Mitochondri... 23 8.6
pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragm... 23 8.6
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 23 8.6
pdb|1BGY|F Chain F, Cytochrome Bc1 Complex From Bovine >gi|... 23 8.6
pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin >gi|49411... 23 8.6
pdb|1GD4|A Chain A, Solution Structure Of P25s Cystatin A 23 8.6
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 26.6 bits (57), Expect = 0.78
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 34 RSQQRKEVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKE 93
R +Q E+ K L + E ++D+K +LE+++ D +I+ + +R+K+++
Sbjct: 118 REKQIAEL-KALKESSESNIKDIKKKLEAKRLD---RIQVXXRSTSDKAAQERLKKEINN 173
Query: 94 AHERLRYISHSIHLIISK 111
+H ++ + +I L+ K
Sbjct: 174 SH--IQEVVQTIKLLTEK 189
>pdb|1K47|A Chain A, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|B Chain B, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|C Chain C, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|D Chain D, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|E Chain E, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|F Chain F, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
Length = 337
Score = 26.2 bits (56), Expect = 1.0
Identities = 21/78 (26%), Positives = 41/78 (51%), Gaps = 3/78 (3%)
Query: 30 SRYQRSQQRKEVDKN-LHQICEKIVQDVKSRLESRKKDIWEKIEKLKANLRPV--DNYKR 86
S + Q ++ +++N L E +V V++ + + + I E++E L + D Y
Sbjct: 215 SSHXVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTP 274
Query: 87 MKRQLKEAHERLRYISHS 104
+ RQLKEA + L+ ++ S
Sbjct: 275 LLRQLKEASQDLQAVAKS 292
>pdb|1G6Z|A Chain A, Solution Structure Of The Clr4 Chromo Domain
Length = 70
Score = 25.0 bits (53), Expect = 2.3
Identities = 12/31 (38%), Positives = 16/31 (50%)
Query: 62 SRKKDIWEKIEKLKANLRPVDNYKRMKRQLK 92
S + D WE E L + +KR KR+LK
Sbjct: 36 SSRSDTWEPPENLSGCSAVLAEWKRRKRRLK 66
>pdb|1QKL|A Chain A, Hrpabc14.4, Essential Subunit Of Human Rna Polymerases I,
Ii And Iii
Length = 127
Score = 24.6 bits (52), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (51%)
Query: 60 LESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYI 101
LE+ +++ E +E L + RP N KR+ +ER R +
Sbjct: 25 LENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVL 66
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Hyaluronate Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Hyaluronate Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation:
Structure Of Streptococcus Pneumoniae Hyaluronate Lyase
In Complex With Hyaluronic Acid Disaccharide At 1.7 A
Resolution
Length = 731
Score = 23.9 bits (50), Expect = 5.0
Identities = 16/71 (22%), Positives = 28/71 (38%), Gaps = 2/71 (2%)
Query: 25 WKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRLESRKKDI--WEKIEKLKANLRPVD 82
W + Q + + L+Q E V D S + S+ I WEK K +
Sbjct: 14 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYKTSANLTA 73
Query: 83 NYKRMKRQLKE 93
Y++++ K+
Sbjct: 74 TYRKLEEMAKQ 84
>pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor
1-(5-Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor
[n-(2-Methylamino)ethyl]-5-Isoquinolinesulfonamide
pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor
N-[2-(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
Length = 350
Score = 23.9 bits (50), Expect = 5.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 54 QDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISH 103
+ VK L K+D +K E N +D ++R+K + R+ + H
Sbjct: 13 ESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKH 62
>pdb|1CTP|E Chain E, Camp-Dependent Protein Kinase (E.C.2.7.1.37) (Capk)
(Catalytic Subunit)
Length = 350
Score = 23.9 bits (50), Expect = 5.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 54 QDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISH 103
+ VK L K+D +K E N +D ++R+K + R+ + H
Sbjct: 13 ESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKH 62
>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hexasaccharide Hyaluronan Substrate
pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Tetrasaccharide Hyaluronan Substrate
Length = 721
Score = 23.9 bits (50), Expect = 5.0
Identities = 16/71 (22%), Positives = 28/71 (38%), Gaps = 2/71 (2%)
Query: 25 WKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRLESRKKDI--WEKIEKLKANLRPVD 82
W + Q + + L+Q E V D S + S+ I WEK K +
Sbjct: 12 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYKTSANLTA 71
Query: 83 NYKRMKRQLKE 93
Y++++ K+
Sbjct: 72 TYRKLEEMAKQ 82
>pdb|1CMK|E Chain E, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37)
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 23.9 bits (50), Expect = 5.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 54 QDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISH 103
+ VK L K+D +K E N +D ++R+K + R+ + H
Sbjct: 13 ESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKH 62
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
Length = 350
Score = 23.9 bits (50), Expect = 5.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 54 QDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISH 103
+ VK L K+D +K E N +D ++R+K + R+ + H
Sbjct: 13 ESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKH 62
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
Length = 350
Score = 23.5 bits (49), Expect = 6.6
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 54 QDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISH 103
+ VK L K+D +K E N +D + R+K + R+ + H
Sbjct: 13 ESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKH 62
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Phosphorylated
Substrate Peptide And Detergent
Length = 350
Score = 23.5 bits (49), Expect = 6.6
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 54 QDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISH 103
+ VK L K+D +K E N +D + R+K + R+ + H
Sbjct: 13 ESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKH 62
>pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|C Chain C, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|D Chain D, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|E Chain E, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|B Chain B, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|A Chain A, Crystal Structure Of Eha2 (23-185)
Length = 155
Score = 23.5 bits (49), Expect = 6.6
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 40 EVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKA---NLRPVD--------NYKRMK 88
+++K ++ E +QD++ +E K D+W +L N +D +++ +
Sbjct: 35 QIEKEFSEV-EGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTR 93
Query: 89 RQLKEAHERLRYISHSIH 106
RQL+E E + S I+
Sbjct: 94 RQLRENAEEMGNGSFKIY 111
>pdb|1APM|E Chain E, c-AMP-Dependent Protein Kinase (E.C.2.7.1.37) (cAPK)
(Catalytic Subunit) "alpha" Isoenzyme Mutant With Ser
139 Replaced By Ala (S139A) Complex With The Peptide
Inhibitor Pki(5-24) And The Detergent Mega-8
Length = 350
Score = 23.5 bits (49), Expect = 6.6
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 54 QDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISH 103
+ VK L K+D +K E N +D + R+K + R+ + H
Sbjct: 13 ESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKH 62
>pdb|1BX6| Crystal Structure Of The Potent Natural Product Inhibitor Balanol
In Complex With The Catalytic Subunit Of Camp-Dependent
Protein Kinase
pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
Length = 350
Score = 23.5 bits (49), Expect = 6.6
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 54 QDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISH 103
+ VK L K+D +K E N +D + R+K + R+ + H
Sbjct: 13 ESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKH 62
>pdb|1ATP|E Chain E, c-AMP-Dependent Protein Kinase (E.C.2.7.1.37) (cAPK)
(Catalytic Subunit) Complex With The Peptide Inhibitor
Pki(5-24) And Mnatp (A Ternary Complex Of Capk)
pdb|2CPK|E Chain E, c-AMP-Dependent Protein Kinase (E.C.2.7.1.37) (cAPK)
(Catalytic Subunit)
Length = 350
Score = 23.5 bits (49), Expect = 6.6
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 54 QDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISH 103
+ VK L K+D +K E N +D + R+K + R+ + H
Sbjct: 13 ESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKH 62
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 23.5 bits (49), Expect = 6.6
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 54 QDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISH 103
+ VK L K+D +K E N +D + R+K + R+ + H
Sbjct: 13 ESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKH 62
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 23.1 bits (48), Expect = 8.6
Identities = 16/70 (22%), Positives = 34/70 (47%), Gaps = 12/70 (17%)
Query: 40 EVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKA---NLRPVD--------NYKRMK 88
+++K ++ E +QD++ +E K D+W +L N +D +++ +
Sbjct: 386 QIEKEFSEV-EGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTR 444
Query: 89 RQLKEAHERL 98
RQL+E E +
Sbjct: 445 RQLRENAEEM 454
>pdb|1QCR|F Chain F, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 103
Score = 23.1 bits (48), Expect = 8.6
Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Query: 55 DVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHE 96
D+ R + K+ W K E+ K+ L P K + R+ KE E
Sbjct: 60 DLSMRQQILPKEQWTKYEEDKSYLEPY--LKEVIRERKEREE 99
>pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|F Chain F, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|B Chain B, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
Length = 138
Score = 23.1 bits (48), Expect = 8.6
Identities = 16/70 (22%), Positives = 34/70 (47%), Gaps = 12/70 (17%)
Query: 40 EVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKA---NLRPVD--------NYKRMK 88
+++K ++ E +QD++ +E K D+W +L N +D +++ +
Sbjct: 28 QIEKEFSEV-EGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTR 86
Query: 89 RQLKEAHERL 98
RQL+E E +
Sbjct: 87 RQLRENAEEM 96
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 23.1 bits (48), Expect = 8.6
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 38 RKEVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHER 97
R ++K + +C + + + + RK D E ++++KA R + K+M+R + E ++
Sbjct: 273 RLRINKRILALC---MGNHELYMRRRKPDTIE-VQQMKAQAREEKHQKQMERAMLENEKK 328
Query: 98 LR 99
R
Sbjct: 329 KR 330
>pdb|1BGY|F Chain F, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|R Chain R, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|F Chain F, Cytochrome Bc1 Complex From Bovine
Length = 110
Score = 23.1 bits (48), Expect = 8.6
Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Query: 55 DVKSRLESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHE 96
D+ R + K+ W K E+ K+ L P K + R+ KE E
Sbjct: 67 DLSMRQQILPKEQWTKYEEDKSYLEPY--LKEVIRERKEREE 106
>pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin
pdb|1HGE|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGH|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGI|B Chain B, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|D Chain D, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|F Chain F, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGJ|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGD|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1EO8|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1HGG|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|3HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|4HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|1HGF|B Chain B, Hemagglutinin (Bromelain Digested)
pdb|1HGF|D Chain D, Hemagglutinin (Bromelain Digested)
pdb|1HGF|F Chain F, Hemagglutinin (Bromelain Digested)
pdb|2HMG|B Chain B, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|D Chain D, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|F Chain F, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|1KEN|B Chain B, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|D Chain D, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|F Chain F, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1QFU|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 175
Score = 23.1 bits (48), Expect = 8.6
Identities = 16/70 (22%), Positives = 34/70 (47%), Gaps = 12/70 (17%)
Query: 40 EVDKNLHQICEKIVQDVKSRLESRKKDIWEKIEKLKA---NLRPVD--------NYKRMK 88
+++K ++ E +QD++ +E K D+W +L N +D +++ +
Sbjct: 65 QIEKEFSEV-EGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTR 123
Query: 89 RQLKEAHERL 98
RQL+E E +
Sbjct: 124 RQLRENAEEM 133
>pdb|1GD4|A Chain A, Solution Structure Of P25s Cystatin A
Length = 98
Score = 23.1 bits (48), Expect = 8.6
Identities = 9/26 (34%), Positives = 18/26 (68%)
Query: 50 EKIVQDVKSRLESRKKDIWEKIEKLK 75
++IV VKS+LE + + + K+E ++
Sbjct: 17 QEIVDKVKSQLEEKTNETYGKLEAVQ 42
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 627,496
Number of Sequences: 13198
Number of extensions: 20540
Number of successful extensions: 86
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 26
length of query: 118
length of database: 2,899,336
effective HSP length: 77
effective length of query: 41
effective length of database: 1,883,090
effective search space: 77206690
effective search space used: 77206690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)