BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645353|ref|NP_207527.1| hypothetical protein
[Helicobacter pylori 26695]
(521 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 31 0.39
pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter P... 31 0.39
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 30 0.50
pdb|2SCP|A Chain A, Sarcoplasmic Calcium-Binding Protein >g... 30 0.50
pdb|1QJB|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE... 30 0.86
pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing... 28 3.3
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 27 4.3
pdb|1NF1|A Chain A, The Gap Related Domain Of Neurofibromin 27 4.3
pdb|1JFL|A Chain A, Crystal Structure Determination Of Aspa... 27 5.6
pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) ... 27 5.6
pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed Wit... 27 5.6
pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Inf... 26 9.5
pdb|1B54| Crystal Structure Of A Yeast Hypothetical Prote... 26 9.5
pdb|1QMF|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) ... 26 9.5
pdb|1PMD| Penicillin-Binding Protein 2x (Pbp-2x) 26 9.5
pdb|1JEQ|A Chain A, Crystal Structure Of The Ku Heterodimer... 26 9.5
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 30.8 bits (68), Expect = 0.39
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 66 AFYGETGAGKSTFIECLRMFFKEQSK--VVQQERFKRLYSNYQN 107
A G G+GKS I+ ++ F EQSK + E+F +++ +N
Sbjct: 28 AIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSEN 71
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
Length = 330
Score = 30.8 bits (68), Expect = 0.39
Identities = 11/41 (26%), Positives = 24/41 (57%)
Query: 69 GETGAGKSTFIECLRMFFKEQSKVVQQERFKRLYSNYQNNY 109
G TG+GK+T+I+ + F ++ +++ E + + + NY
Sbjct: 178 GGTGSGKTTYIKSIXEFIPKEERIISIEDTEEIVFKHHKNY 218
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 30.4 bits (67), Expect = 0.50
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 12 IENLQNIFKNTDNENERLKKFNQEALEVFQKLER-ESLKELESLKNNEEWENFTIAFYGE 70
+E + I N R + + EAL K E E L +++ N E F I G
Sbjct: 42 VETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGV 101
Query: 71 TGAGKSTFIECLRMFFKEQSKVV 93
G GK+T I L F++Q K V
Sbjct: 102 NGVGKTTTIGKLARQFEQQGKSV 124
>pdb|2SCP|A Chain A, Sarcoplasmic Calcium-Binding Protein
pdb|2SCP|B Chain B, Sarcoplasmic Calcium-Binding Protein
Length = 174
Score = 30.4 bits (67), Expect = 0.50
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 60 WENFTIAFYGETGAGKSTFIECLRMFFK--EQSKVVQQER---FKRLYSNYQNNYQNDE 113
W+NF A G G ++TFI ++ K E VV+ F+ + +N NN DE
Sbjct: 57 WDNFLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDE 115
>pdb|1QJB|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 1)
pdb|1IB1|A Chain A, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|B Chain B, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|C Chain C, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|D Chain D, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1QJA|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 2)
pdb|1QJB|A Chain A, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 1)
pdb|1QJA|A Chain A, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 2)
pdb|1A38|A Chain A, 14-3-3 Protein Zeta Bound To R18 Peptide
pdb|1A38|B Chain B, 14-3-3 Protein Zeta Bound To R18 Peptide
pdb|1A4O|A Chain A, 14-3-3 Protein Zeta Isoform
pdb|1A4O|B Chain B, 14-3-3 Protein Zeta Isoform
pdb|1A4O|C Chain C, 14-3-3 Protein Zeta Isoform
pdb|1A4O|D Chain D, 14-3-3 Protein Zeta Isoform
pdb|1A37|A Chain A, 14-3-3 Protein Zeta Bound To Ps-Raf259 Peptide
pdb|1A37|B Chain B, 14-3-3 Protein Zeta Bound To Ps-Raf259 Peptide
Length = 245
Score = 29.6 bits (65), Expect = 0.86
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 46 ESLKELESLKNNEEWENFTIAFYGETGAGKSTFIECLRMFFKEQSKVVQQERFKRLYSNY 105
+S+ E + +NEE ++A+ GA +S++ R+ + K E+ +++ Y
Sbjct: 27 KSVTEQGAELSNEERNLLSVAYKNVVGARRSSW----RVVSSIEQKTEGAEKKQQMAREY 82
Query: 106 QNNYQNDECKKQAILNELHSLQDGAIIGDGRSD----FTLKTRSYSFQYNHQNFTLLDVP 161
+ E + + I N++ SL + +I + F LK + ++Y L +V
Sbjct: 83 REKI---ETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRY------LAEVA 133
Query: 162 GIEGDEKK-VIDQISNATQKAHAIFYVTKTPNPP 194
GD+KK ++DQ A Q+A I P P
Sbjct: 134 A--GDDKKGIVDQSQQAYQEAFEISKKEMQPTHP 165
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 27.7 bits (60), Expect = 3.3
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 191 PNPPQKGEEKKEGTIEKIQKQLDSQTEVWTIFNKPINNPRAFKDGLIDGSEKESLKILN 249
P P +GE+ +G I ++ ++ +W IFN+ + KDG E K+ N
Sbjct: 431 PQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHEDLNEVAKLFN 489
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 27.3 bits (59), Expect = 4.3
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 65 IAFYGETGAGKSTFIECLRMFFK 87
I+ G +G+GKSTF+ C+ K
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLEK 57
>pdb|1NF1|A Chain A, The Gap Related Domain Of Neurofibromin
Length = 333
Score = 27.3 bits (59), Expect = 4.3
Identities = 29/125 (23%), Positives = 55/125 (43%), Gaps = 17/125 (13%)
Query: 279 LIPGTDFDKNKQKFLKDFKARELLYQ------SHFQQLGEFIAEELIKNSRAKIIQSNCN 332
++P + +D+ + + F +R LLYQ S +L + + NS A I + C
Sbjct: 33 VVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGNSLASKIMTFCF 92
Query: 333 KAL------KVVEQLQKAIEIT-----IEKRIDPMIKEAQEYQHEARYNLDRSTDKFILN 381
K K+++ L + + + + +DP E E E + NL + T+KF
Sbjct: 93 KVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTRLEPSESLEENQRNLLQMTEKFFHA 152
Query: 382 LTNSA 386
+ +S+
Sbjct: 153 IISSS 157
>pdb|1JFL|A Chain A, Crystal Structure Determination Of Aspartate Racemase From
An Archaea
pdb|1JFL|B Chain B, Crystal Structure Determination Of Aspartate Racemase From
An Archaea
Length = 228
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 324 AKIIQSNCNKALKVVEQLQKAIEITIEKRIDPMIKEAQE 362
A I CN A VE ++KAI+I I I+ K+ +E
Sbjct: 75 ADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKE 113
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 191 PNPPQKGEEKKEGTIEKIQKQLDSQTEVWTIFNKPINNPRAFKDGLIDGSEKESLKILN 249
P P +GE+ +G I ++ ++ +W +FN+ + KDG E K+ N
Sbjct: 468 PQVPVEGEDYGKGVIFYLRDKVVVGIVLWNVFNRMPIARKIIKDGEQHEDLNEVAKLFN 526
>pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed With Mupirocin
pdb|1ILE| Isoleucyl-Trna Synthetase
pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
Length = 821
Score = 26.9 bits (58), Expect = 5.6
Identities = 19/92 (20%), Positives = 41/92 (43%), Gaps = 8/92 (8%)
Query: 189 KTPNPPQKGEEKKEGTIEKIQKQLDSQTEVWTIFNKPINNPRAFKDGLIDGSEKESLKIL 248
K P PP+K E + ++Q + TE ++ P + RA +D +++ + ++
Sbjct: 665 KNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYD-PTTSARALRDFVVEDLSQWYVRRN 723
Query: 249 NKEMKNILGKHYKGYKAVSAQVAFYGLSSALI 280
+ + +K A+ + A+ L AL+
Sbjct: 724 RR-------RFWKNEDALDREAAYATLYEALV 748
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 26.2 bits (56), Expect = 9.5
Identities = 12/38 (31%), Positives = 18/38 (46%)
Query: 228 NPRAFKDGLIDGSEKESLKILNKEMKNILGKHYKGYKA 265
NP A G+ D L + ++MK++L K K A
Sbjct: 34 NPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMA 71
>pdb|1B54| Crystal Structure Of A Yeast Hypothetical Protein - A Structure
From Bnl's Human Proteome Project
Length = 257
Score = 26.2 bits (56), Expect = 9.5
Identities = 49/201 (24%), Positives = 73/201 (35%), Gaps = 45/201 (22%)
Query: 293 LKDFKARELLYQSHFQQLGEFIAEELIKNSRAKI------------IQSNCNKALKVVEQ 340
LK ++LY ++ GE +ELI+ +AK+ +Q+N K L V
Sbjct: 50 LKPASDIQILYDHGVREFGENYVQELIE--KAKLLPDDIKWHFIGGLQTNKCKDLAKVPN 107
Query: 341 LQKAIEITIEKRIDPMIKEAQEYQHE-------ARYNLDRSTDKFILNLTNSAFYEIDQF 393
L I K+ + + ++Q + + N K LN F ID F
Sbjct: 108 LYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFF 167
Query: 394 KSDLREKMYAHINKNIEDEECKEIFKNEL--IQGIETLHEDIKWRFRECEKRFDGEIKEA 451
S EECK I N L I HED K E R + E
Sbjct: 168 LS----------------EECKYIKLNGLMTIGSWNVSHEDSK------ENRDFATLVEW 205
Query: 452 IKQLEYRIKDSLAMLERISID 472
K+++ + SL + +S D
Sbjct: 206 KKKIDAKFGTSLKLSMGMSAD 226
>pdb|1QMF|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) Acyl-Enzyme Complex
pdb|1QME|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x)
Length = 702
Score = 26.2 bits (56), Expect = 9.5
Identities = 28/106 (26%), Positives = 53/106 (49%), Gaps = 18/106 (16%)
Query: 203 GTIEKIQKQLDSQTEVWTIFNKPINNPRAFKDGLIDGSEKESLKILNKEMKNILGKHYKG 262
GT + Q+ +D + +V+T + P+ ++F + +D ++ K+ K M L
Sbjct: 199 GTEQVSQRTMDGK-DVYTTISSPL---QSFMETQMDAFQE---KVKGKYMTATL------ 245
Query: 263 YKAVSAQVAFYGLSSALIPGTDFDKNKQKFLKDFKARELLYQSHFQ 308
VSA+ L++ P D D K+ +DF R++LYQS+++
Sbjct: 246 ---VSAKTGEI-LATTQRPTFDAD-TKEGITEDFVWRDILYQSNYE 286
>pdb|1PMD| Penicillin-Binding Protein 2x (Pbp-2x)
Length = 675
Score = 26.2 bits (56), Expect = 9.5
Identities = 28/106 (26%), Positives = 53/106 (49%), Gaps = 18/106 (16%)
Query: 203 GTIEKIQKQLDSQTEVWTIFNKPINNPRAFKDGLIDGSEKESLKILNKEMKNILGKHYKG 262
GT + Q+ +D + +V+T + P+ ++F + +D ++ K+ K M L
Sbjct: 172 GTEQVSQRTMDGK-DVYTTISSPL---QSFMETQMDAFQE---KVKGKYMTATL------ 218
Query: 263 YKAVSAQVAFYGLSSALIPGTDFDKNKQKFLKDFKARELLYQSHFQ 308
VSA+ L++ P D D K+ +DF R++LYQS+++
Sbjct: 219 ---VSAKTGEI-LATTQRPTFDAD-TKEGITEDFVWRDILYQSNYE 259
>pdb|1JEQ|A Chain A, Crystal Structure Of The Ku Heterodimer
pdb|1JEY|A Chain A, Crystal Structure Of The Ku Heterodimer Bound To Dna
Length = 609
Score = 26.2 bits (56), Expect = 9.5
Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 5/137 (3%)
Query: 1 MKNIYLD--VKASIENLQNIFKNTDNENERLKKFNQEALEVFQKLERESLKELESLKNNE 58
++++Y+ + + + L +F T+ + + N L+ + + EL+ K +
Sbjct: 67 IQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQ 126
Query: 59 EWENFT-IAFYGETGAGKSTFIECLRMFFKEQSKVVQQERFKRLYSNYQNNYQNDECKKQ 117
+ F + +G + C +F Q K+ + L++N N + ND K
Sbjct: 127 GQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIM--LFTNEDNPHGNDSAKAS 184
Query: 118 AILNELHSLQDGAIIGD 134
+ L+D I D
Sbjct: 185 RARTKAGDLRDTGIFLD 201
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,047,562
Number of Sequences: 13198
Number of extensions: 131216
Number of successful extensions: 455
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 18
length of query: 521
length of database: 2,899,336
effective HSP length: 92
effective length of query: 429
effective length of database: 1,685,120
effective search space: 722916480
effective search space used: 722916480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)