BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645354|ref|NP_207528.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(439 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PVD|A Chain A, Pyruvate Decarboxylase (Pdc) (E.C.4.1.1... 30 0.54
pdb|1PYD|A Chain A, Pyruvate Decarboxylase (Pdc) (E.C.4.1.1... 30 0.54
pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase >... 28 2.7
pdb|1PVL| Structure Of The Panton-Valentine Leucocidin F ... 27 4.6
pdb|1G71|A Chain A, Crystal Structure Of Pyrococcus Furiosu... 27 4.6
pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase >... 27 4.6
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Int... 27 6.0
pdb|1DOV|A Chain A, Crystal Structure Of The Alpha-Catenin ... 27 6.0
pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase... 27 6.0
pdb|1TKB|A Chain A, Transketolase (E.C.2.2.1.1) Complexed W... 27 6.0
pdb|1AY0|A Chain A, Identification Of Catalytically Importa... 27 6.0
pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At ... 27 6.0
pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase... 27 6.0
pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Ce... 26 7.8
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Compl... 26 7.8
>pdb|1PVD|A Chain A, Pyruvate Decarboxylase (Pdc) (E.C.4.1.1.1)
pdb|1PVD|B Chain B, Pyruvate Decarboxylase (Pdc) (E.C.4.1.1.1)
Length = 537
Score = 30.0 bits (66), Expect = 0.54
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 12 ISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDK 71
+ LG NLVD V KL + K D +++E I TIL KD
Sbjct: 154 VYLGLPANLVDLNVP-AKLLQTPIDMSLKPNDA----------ESEKEVIDTILALVKDA 202
Query: 72 KEGAILIASGCLSERYKDEIKELI 95
K IL + C K E K+LI
Sbjct: 203 KNPVILADACCSRHDVKAETKKLI 226
>pdb|1PYD|A Chain A, Pyruvate Decarboxylase (Pdc) (E.C.4.1.1.1)
pdb|1PYD|B Chain B, Pyruvate Decarboxylase (Pdc) (E.C.4.1.1.1)
Length = 556
Score = 30.0 bits (66), Expect = 0.54
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 12 ISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDK 71
+ LG NLVD V KL + K D +++E I TIL KD
Sbjct: 163 VYLGLPANLVDLNVP-AKLLQTPIDMSLKPNDA----------ESEKEVIDTILALVKDA 211
Query: 72 KEGAILIASGCLSERYKDEIKELI 95
K IL + C K E K+LI
Sbjct: 212 KNPVILADACCSRHDVKAETKKLI 235
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 27.7 bits (60), Expect = 2.7
Identities = 15/54 (27%), Positives = 29/54 (52%), Gaps = 1/54 (1%)
Query: 77 LIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI-AKKQNQFSEQVFLSE 129
LI L + Y+D ++E P + GD+D I+ + A+K + F Q+ +++
Sbjct: 84 LIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQ 137
>pdb|1PVL| Structure Of The Panton-Valentine Leucocidin F Component From
Staphylococcus Aureus
Length = 301
Score = 26.9 bits (58), Expect = 4.6
Identities = 39/161 (24%), Positives = 63/161 (38%), Gaps = 18/161 (11%)
Query: 17 SKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKKEGAI 76
S+ VD ++ L Y T T+D+ + I T FI+ + IL AA +
Sbjct: 8 SEKKVDDKITL---YKTTATSDSDKLKISQILTFNFIKDKSYDKDTLILKAAGN------ 58
Query: 77 LIASGCLSERYKDEIKELI---PEVDIFTGVGDYDKIDIMIAKKQNQFSE-QVFLSEHYN 132
I SG KD I + +I D ++++ +NQ E QV + Y+
Sbjct: 59 -IYSGYTKPNPKDTISSQFYWGSKYNISINSDSNDSVNVVDYAPKNQNEEFQVQQTVGYS 117
Query: 133 ARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELD 173
G ++ +S G N SF ++K + LD
Sbjct: 118 ----YGGDINISNGLSGGGNGSKSFSETINYKQESYRTSLD 154
>pdb|1G71|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna Primase
pdb|1G71|B Chain B, Crystal Structure Of Pyrococcus Furiosus Dna Primase
Length = 347
Score = 26.9 bits (58), Expect = 4.6
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 269 MRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGHPE----ENESEFEELSAFLDEFQFD 322
+RRN ++ K+LD +++ E F+R I+ PE E+ ++ LS + FD
Sbjct: 227 IRRNIAK----KILDHKEEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFD 280
>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 26.9 bits (58), Expect = 4.6
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 77 LIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI-AKKQNQFSEQVFLSE 129
LI L + Y+D ++E P + GD+D I+ + A+K + F Q +++
Sbjct: 84 LIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQXLVTQ 137
>pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
pdb|1TRK|A Chain A, Transketolase (E.C.2.2.1.1)
pdb|1TRK|B Chain B, Transketolase (E.C.2.2.1.1)
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-Phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-Phosphate
Length = 680
Score = 26.6 bits (57), Expect = 6.0
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 95 IPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQK 154
+P V++ TG + I+ Q L+ YN T S + YV + +GC Q+
Sbjct: 108 LPGVEVTTG-----PLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQE 162
Query: 155 CSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTF 192
S G L+ L +I + + + G T ++F
Sbjct: 163 GISSEASSLAGHLKLGNLIAIYDD-NKITIDGATSISF 199
>pdb|1DOV|A Chain A, Crystal Structure Of The Alpha-Catenin Dimerization Domain
Length = 181
Score = 26.6 bits (57), Expect = 6.0
Identities = 26/117 (22%), Positives = 47/117 (39%), Gaps = 9/117 (7%)
Query: 37 NDAKSADVILINTCGFIESAKQESIQTILNAAKDKKEGAILIASGCLSERYKDEIKELIP 96
N ++A +L + A + +L K ++G + + + + + K L P
Sbjct: 42 NMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKP 101
Query: 97 EVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQ 153
EVD K++IM AK+Q + + + AR I +V S+ C Q
Sbjct: 102 EVD---------KLNIMAAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQ 149
>pdb|1K2Y|X Chain X, Crystal Structure Of PhosphomannomutasePHOSPHOGLUCOMUTASE
S108a Mutant From P. Aeruginosa
Length = 463
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/38 (28%), Positives = 23/38 (59%)
Query: 76 ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIM 113
I++A L+ ++E I + D+ +GVG +++DI+
Sbjct: 119 IVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDIL 156
>pdb|1TKB|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
1'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKB|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
1'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKA|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
3'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKA|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
3'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKC|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
6'-Methyl-Thiamin Diphosphate And Calcium
pdb|1TKC|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
6'-Methyl-Thiamin Diphosphate And Calcium
Length = 678
Score = 26.6 bits (57), Expect = 6.0
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 95 IPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQK 154
+P V++ TG + I+ Q L+ YN T S + YV + +GC Q+
Sbjct: 106 LPGVEVTTG-----PLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQE 160
Query: 155 CSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTF 192
S G L+ L +I + + + G T ++F
Sbjct: 161 GISSEASSLAGHLKLGNLIAIYDD-NKITIDGATSISF 197
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 26.6 bits (57), Expect = 6.0
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 95 IPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQK 154
+P V++ TG + I+ Q L+ YN T S + YV + +GC Q+
Sbjct: 108 LPGVEVTTG-----PLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQE 162
Query: 155 CSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTF 192
S G L+ L +I + + + G T ++F
Sbjct: 163 GISSEASSLAGHLKLGNLIAIYDD-NKITIDGATSISF 199
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
Length = 345
Score = 26.6 bits (57), Expect = 6.0
Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 51 GFIESAKQESIQTILN-AAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTG 103
GF + ES+ + + A+++ + + +++ +S+ YK+ + +++P VDI G
Sbjct: 169 GFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFG 222
>pdb|1K35|A Chain A, Crystal Structure Of PhosphomannomutasePHOSPHOGLUCOMUTASE
From P.Aeruginosa
Length = 463
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/38 (28%), Positives = 23/38 (59%)
Query: 76 ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIM 113
I++A L+ ++E I + D+ +GVG +++DI+
Sbjct: 119 IVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDIL 156
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 26.2 bits (56), Expect = 7.8
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Query: 277 HHLKLLDAMKQVKESFIRSTIIVGHPEENESEFEE 311
H + L+ + E+F+R +++G P +NE FEE
Sbjct: 498 HPVNGLNKQRTALENFLR--LLIGLPSQNELRFEE 530
>pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2-Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2-Deoxy-Glucitol-6-Phosphate
pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
Length = 533
Score = 26.2 bits (56), Expect = 7.8
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Query: 277 HHLKLLDAMKQVKESFIRSTIIVGHPEENESEFEE 311
H + L+ + E+F+R +++G P +NE FEE
Sbjct: 498 HPVNGLNKQRTALENFLR--LLIGLPSQNELRFEE 530
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.134 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,322,859
Number of Sequences: 13198
Number of extensions: 92144
Number of successful extensions: 218
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 18
length of query: 439
length of database: 2,899,336
effective HSP length: 91
effective length of query: 348
effective length of database: 1,698,318
effective search space: 591014664
effective search space used: 591014664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)