BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645355|ref|NP_207529.1| xanthine guanine
phosphoribosyl transferase (gpt) [Helicobacter pylori 26695]
(153 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A98|B Chain B, Xprtase From E. Coli Complexed With Gmp... 42 4e-05
pdb|1A97|B Chain B, Xprtase From E. Coli Complexed With Gmp... 42 4e-05
pdb|1A96|C Chain C, Xprtase From E. Coli With Bound Cprpp A... 41 5e-05
pdb|1DQP|A Chain A, Crystal Structure Of Giardia Guanine Ph... 35 0.004
pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between ... 33 0.011
pdb|1D6N|A Chain A, Ternary Complex Structure Of Human Hgpr... 32 0.025
pdb|1BZY|A Chain A, Human Hgprtase With Transition State In... 32 0.025
pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphori... 30 0.094
pdb|1MGP|A Chain A, Hypothetical Protein Tm841 From Thermot... 25 3.0
pdb|1J5Y|A Chain A, Crystal Structure Of Transcriptional Re... 25 3.9
pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase >gi|1865554... 25 5.2
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransfera... 25 5.2
pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Diki... 25 5.2
pdb|1DIK| Pyruvate Phosphate Dikinase 25 5.2
pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Diki... 25 5.2
pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dik... 25 5.2
pdb|1LDJ|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxsk... 25 5.2
pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxsk... 25 5.2
pdb|1A4S|A Chain A, Betaine Aldehyde Dehydrogenase From Cod... 24 6.7
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of B... 24 6.7
>pdb|1A98|B Chain B, Xprtase From E. Coli Complexed With Gmp
pdb|1A98|A Chain A, Xprtase From E. Coli Complexed With Gmp
Length = 152
Score = 41.6 bits (96), Expect = 4e-05
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 27 EALVCVMRGGMTLAHFLSLHWNLREVYGINAISYDTTKQQNALKIENIPTIKERLKTILV 86
+ ++ V RGG+ L+ +R V + SYD N +++ + + + +V
Sbjct: 30 KGIIAVSRGGLVPGALLARELGIRHVDTVAISSYD---HDNQRELKVLKRAEGDGEGFIV 86
Query: 87 VDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSAKYKADAFLKDAPE--WIDFFWE 144
+D++VD+G + A+ E +P K + ++F K + + D ++ D P+ WI+ W+
Sbjct: 87 IDDLVDTGGTAVAI----REMYP--KAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWD 140
Query: 145 V 145
+
Sbjct: 141 M 141
>pdb|1A97|B Chain B, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|C Chain C, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|A Chain A, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|D Chain D, Xprtase From E. Coli Complexed With Gmp
Length = 148
Score = 41.6 bits (96), Expect = 4e-05
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 27 EALVCVMRGGMTLAHFLSLHWNLREVYGINAISYDTTKQQNALKIENIPTIKERLKTILV 86
+ ++ V RGG+ L+ +R V + SYD N +++ + + + +V
Sbjct: 28 KGIIAVSRGGLVPGALLARELGIRHVDTVAISSYD---HDNQRELKVLKRAEGDGEGFIV 84
Query: 87 VDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSAKYKADAFLKDAPE--WIDFFWE 144
+D++VD+G + A+ E +P K + ++F K + + D ++ D P+ WI+ W+
Sbjct: 85 IDDLVDTGGTAVAI----REMYP--KAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWD 138
Query: 145 V 145
+
Sbjct: 139 M 139
>pdb|1A96|C Chain C, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A95|B Chain B, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|C Chain C, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A96|B Chain B, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A95|A Chain A, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A96|A Chain A, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1NUL|A Chain A, Xprtase From E. Coli
pdb|1A95|D Chain D, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A96|D Chain D, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1NUL|B Chain B, Xprtase From E. Coli
Length = 152
Score = 41.2 bits (95), Expect = 5e-05
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 27 EALVCVMRGGMTLAHFLSLHWNLREVYGINAISYDTTKQQNALKIENIPTIKERLKTILV 86
+ ++ V RGG+ L+ +R V + SYD N +++ + + + +V
Sbjct: 30 KGIIAVSRGGLVPGALLARELGIRHVDTVCISSYD---HDNQRELKVLKRAEGDGEGFIV 86
Query: 87 VDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSAKYKADAFLKDAPE--WIDFFWE 144
+D++VD+G + A+ E +P K + ++F K + + D ++ D P+ WI+ W+
Sbjct: 87 IDDLVDTGGTAVAI----REMYP--KAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWD 140
Query: 145 V 145
+
Sbjct: 141 M 141
>pdb|1DQP|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
pdb|1DQN|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQN|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQP|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
Length = 230
Score = 35.0 bits (79), Expect = 0.004
Identities = 21/77 (27%), Positives = 44/77 (56%), Gaps = 3/77 (3%)
Query: 26 PEALVCVMRGGMTLAHFLSLHWNLR-EVYGINAISYDTTKQQNAL-KIENIPTIKERLKT 83
P LV ++ G A L++H ++ + SY T+Q++ + E++ +KE+ +
Sbjct: 62 PVTLVALLTGAYLYASLLTVHLTFPYTLHFVKVSSYKGTRQESVVFDEEDLKQLKEKREV 121
Query: 84 ILVVDEIVDSGNSLEAV 100
+L+ DE VDSG+++ ++
Sbjct: 122 VLI-DEYVDSGHTIFSI 137
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
Length = 182
Score = 33.5 bits (75), Expect = 0.011
Identities = 17/46 (36%), Positives = 28/46 (59%), Gaps = 1/46 (2%)
Query: 80 RLKTILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSAK 125
R K +L+V++I+DSGN+L V ++L + P K +L K S +
Sbjct: 95 RGKDVLIVEDIIDSGNTLSKVREILSLREP-KSLAICTLLDKPSRR 139
>pdb|1D6N|A Chain A, Ternary Complex Structure Of Human Hgprtase, Prpp, Mg2+,
And The Inhibitor Hpp Reveals The Involvement Of The
Flexible Loop In Substrate Binding
pdb|1D6N|B Chain B, Ternary Complex Structure Of Human Hgprtase, Prpp, Mg2+,
And The Inhibitor Hpp Reveals The Involvement Of The
Flexible Loop In Substrate Binding
Length = 214
Score = 32.3 bits (72), Expect = 0.025
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 82 KTILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKT--SAKYKAD 129
K +L+V++I+D+G +++ +L ++ + +P ++ L ++T S YK D
Sbjct: 124 KNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPD 173
>pdb|1BZY|A Chain A, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|B Chain B, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|C Chain C, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|D Chain D, Human Hgprtase With Transition State Inhibitor
pdb|1HMP|A Chain A, Hypoxanthine Guanine Phosphoribosyltransferase (Hgprtase)
(E.C.2.4.2.8)
pdb|1HMP|B Chain B, Hypoxanthine Guanine Phosphoribosyltransferase (Hgprtase)
(E.C.2.4.2.8)
Length = 217
Score = 32.3 bits (72), Expect = 0.025
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 82 KTILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKT--SAKYKAD 129
K +L+V++I+D+G +++ +L ++ + +P ++ L ++T S YK D
Sbjct: 127 KNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPD 176
>pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
pdb|1HGX|B Chain B, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
Length = 183
Score = 30.4 bits (67), Expect = 0.094
Identities = 22/82 (26%), Positives = 39/82 (46%), Gaps = 1/82 (1%)
Query: 29 LVCVMRGGMTLAHFLSLHWNLR-EVYGINAISYDTTKQQNALKIENIPTIKERLKTILVV 87
++CV+ G + L H + + E I SY TK L I + +LVV
Sbjct: 42 MICVLTGAVFFYTDLLKHLDFQLEPDYIICSSYSGTKSTGNLTISKDLKTNIEGRHVLVV 101
Query: 88 DEIVDSGNSLEAVLKVLEEKHP 109
++I+D+G ++ +L L+ + P
Sbjct: 102 EDIIDTGLTMYQLLNNLQMRKP 123
>pdb|1MGP|A Chain A, Hypothetical Protein Tm841 From Thermotoga Maritima
Reveals Fatty Acid Binding Function
Length = 313
Score = 25.4 bits (54), Expect = 3.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 86 VVDEIVDSGNSLEAVLKVLEEKHPDKKF 113
V E +++G ++E VLK L+E+ +K F
Sbjct: 156 VAREXLENGATIEEVLKKLDERXKNKDF 183
>pdb|1J5Y|A Chain A, Crystal Structure Of Transcriptional Regulator (Tm1602)
From Thermotoga Maritima At 2.3 A Resolution
Length = 187
Score = 25.0 bits (53), Expect = 3.9
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 25 VPEALVCVMRGGMTLAHFLSLHWNLREVYGINAISYDTTKQQNALKIENI 74
+ E L+CV+R G + + H E+ GI D + ++ LK N+
Sbjct: 96 IKEELLCVVRNGGRIVDVIVEHPVYGEIRGI----IDVSSEEEVLKFVNL 141
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 24.6 bits (52), Expect = 5.2
Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
Query: 74 IPTIKERLKTILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSAKYKADAFLK 133
IP + E+ + V D +V E +V +EK D +++ ++ + A ADA +
Sbjct: 704 IPLVGEKKELKFVKDVVV------EVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAE 757
Query: 134 DA 135
+A
Sbjct: 758 EA 759
>pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 24.6 bits (52), Expect = 5.2
Identities = 29/121 (23%), Positives = 56/121 (45%), Gaps = 25/121 (20%)
Query: 29 LVCVMRGGMTLAHFLSLHWNLREVYGINAI---------------SYDTTKQQNALKI-- 71
++C+++G F +L +L ++ +A+ SY + L+I
Sbjct: 72 ILCLLKGSR--GFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVS 129
Query: 72 ENIPTIKERLKTILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSA---KYKA 128
E++ +K K +L+V++I+D+G +L + L +K K A LF K + +KA
Sbjct: 130 EDLSCLKG--KHVLIVEDIIDTGKTLVKFCEYL-KKFEIKTVAIACLFIKRTPLWNGFKA 186
Query: 129 D 129
D
Sbjct: 187 D 187
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 24.6 bits (52), Expect = 5.2
Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
Query: 74 IPTIKERLKTILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSAKYKADAFLK 133
IP + E+ + V D +V E +V +EK D +++ ++ + A ADA +
Sbjct: 704 IPLVGEKKELKFVKDVVV------EVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAE 757
Query: 134 DA 135
+A
Sbjct: 758 EA 759
>pdb|1DIK| Pyruvate Phosphate Dikinase
Length = 874
Score = 24.6 bits (52), Expect = 5.2
Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
Query: 74 IPTIKERLKTILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSAKYKADAFLK 133
IP + E+ + V D +V E +V +EK D +++ ++ + A ADA +
Sbjct: 705 IPLVGEKKELKFVKDVVV------EVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAE 758
Query: 134 DA 135
+A
Sbjct: 759 EA 760
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 24.6 bits (52), Expect = 5.2
Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
Query: 74 IPTIKERLKTILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSAKYKADAFLK 133
IP + E+ + V D +V E +V +EK D +++ ++ + A ADA +
Sbjct: 704 IPLVGEKKELKFVKDVVV------EVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAE 757
Query: 134 DA 135
+A
Sbjct: 758 EA 759
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 24.6 bits (52), Expect = 5.2
Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
Query: 74 IPTIKERLKTILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSAKYKADAFLK 133
IP + E+ + V D +V E +V +EK D +++ ++ + A ADA +
Sbjct: 704 IPLVGEKKELKFVKDVVV------EVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAE 757
Query: 134 DA 135
+A
Sbjct: 758 EA 759
>pdb|1LDJ|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 24.6 bits (52), Expect = 5.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 89 EIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQK 121
E+ D+ N + V K +E+K +KFY+ L ++
Sbjct: 425 ELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKR 457
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 24.6 bits (52), Expect = 5.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 89 EIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQK 121
E+ D+ N + V K +E+K +KFY+ L ++
Sbjct: 31 ELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKR 63
>pdb|1A4S|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
Length = 503
Score = 24.3 bits (51), Expect = 6.7
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 15 LVKQVEQICGVPEALVCVMRGGMTLAHFLSLHWNLREVYGINAISYDTTKQQNALKIENI 74
++ ++ GVP LV V++GG L H N+ +V ++ + + K
Sbjct: 200 ILAEIFHEAGVPVGLVNVVQGGAETGSLLCHHPNVAKVSFTGSVPTGKKVMEMSAKTVKH 259
Query: 75 PTIKERLKTILVVDEIVDSGNSLEAVL 101
T++ K+ L++ + + N++ L
Sbjct: 260 VTLELGGKSPLLIFKDCELENAVRGAL 286
>pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 24.3 bits (51), Expect = 6.7
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 68 ALKIENIPTIKERLKT---ILVVDEIVDSGNSLEAVLKVLEEKHPDKKFYSASLFQKTSA 124
++ I+ I ++E +K ILV+D + ++K ++ K+P+ + ++ K +A
Sbjct: 149 SIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAA 208
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 860,524
Number of Sequences: 13198
Number of extensions: 31395
Number of successful extensions: 111
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 20
length of query: 153
length of database: 2,899,336
effective HSP length: 80
effective length of query: 73
effective length of database: 1,843,496
effective search space: 134575208
effective search space used: 134575208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)