BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645357|ref|NP_207531.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
         (158 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1B16|A  Chain A, Alcohol Dehydrogenase From Drosophila L...    26  2.4
pdb|1EYE|A  Chain A, 1.7 Angstrom Resolution Crystal Structu...    24  7.0

>pdb|1B16|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
           Complex With Nad-3-Pentanone
 pdb|1B16|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
           Complex With Nad-3-Pentanone
 pdb|1B2L|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis:
           Ternary Complex With Nad-Cyclohexanone
 pdb|1A4U|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis
 pdb|1A4U|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis
 pdb|1B15|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
           Complex With Nad-Acetone
 pdb|1B15|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
           Complex With Nad-Acetone
 pdb|1B14|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
           Complex With Nad+
 pdb|1B14|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
           Complex With Nad+
          Length = 254

 Score = 25.8 bits (55), Expect = 2.4
 Identities = 23/101 (22%), Positives = 45/101 (43%), Gaps = 15/101 (14%)

Query: 51  VFVGLIAIAQIDKEEEETKRHDSSYIVIDELVGMWLAMAISGLSLAGVILSFIFFRIYDI 110
           +FV  +    +D   E  KR+  +++++D +       A++ L      ++ I F  YD+
Sbjct: 9   IFVAALGGIGLDTSRELVKRNLKNFVILDRVEN---PTALAELKAINPKVN-ITFHTYDV 64

Query: 111 TKP-----SLIGKIDKEVK------GGLGVVADDALAGVLA 140
           T P      L+ KI  ++K       G G++ D  +   +A
Sbjct: 65  TVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIA 105



>pdb|1EYE|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of 6-
           Hydroxymethyl-7,8-Dihydropteroate Synthase (Dhps) From
           Mycobacterium Tuberculosis In Complex With 6-
           Hydroxymethylpterin Monophosphate
          Length = 280

 Score = 24.3 bits (51), Expect = 7.0
 Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 4/42 (9%)

Query: 17  GYSKKAPGTIGSLVAL----LLGLPVLIFSANTLFLGAVFVG 54
           G++K A      L AL      G+PVL+ ++   FLGA+  G
Sbjct: 181 GFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAG 222



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.146    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 792,783
Number of Sequences: 13198
Number of extensions: 27621
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 2
length of query: 158
length of database: 2,899,336
effective HSP length: 81
effective length of query: 77
effective length of database: 1,830,298
effective search space: 140932946
effective search space used: 140932946
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)