BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645359|ref|NP_207533.1|
2-hydroxy-6-oxohepta-2,4-dienoate hydrolase [Helicobacter pylori
26695]
(241 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A88|A Chain A, Chloroperoxidase L >gi|3892002|pdb|1A88... 36 0.003
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 27 1.6
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 27 1.6
pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoa... 27 1.6
pdb|1CZM| Drug-Protein Interactions: Structure Of Sulfona... 27 2.8
pdb|1CRM| Carbonic Anhydrase I (Carbonate Dehydratase I, ... 27 2.8
pdb|2CAB| Carbonic Anhydrase Form B (Carbonate Dehydratas... 27 2.8
pdb|1JV0|A Chain A, The Crystal Structure Of The Zinc(Ii) A... 27 2.8
pdb|1A8Q| Bromoperoxidase A1 26 3.6
pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 ... 25 6.1
pdb|1LJ7|A Chain A, Crystal Structure Of Calcium-Depleted H... 25 6.1
pdb|1CII| Colicin Ia 25 8.0
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 36.2 bits (82), Expect = 0.003
Identities = 23/64 (35%), Positives = 30/64 (45%), Gaps = 1/64 (1%)
Query: 155 MGLNQAMYETFKKVISEDFSDHFKRCEKEVLLFWGKDDKATPLS-SAQKMQTLLKRSVLF 213
MG A YE DF+D KR + VL+ G DD+ P + +A K LL + L
Sbjct: 189 MGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTDDQVVPYADAAPKSAELLANATLK 248
Query: 214 VLEG 217
EG
Sbjct: 249 SYEG 252
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 27.3 bits (59), Expect = 1.6
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 2/35 (5%)
Query: 24 SPLNALFLHGW-GSSKEIMQQAFQGC-FLNYNHLY 56
SPLN+LF W +E++++AF+ FL +HLY
Sbjct: 113 SPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY 147
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 27.3 bits (59), Expect = 1.6
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 2/35 (5%)
Query: 24 SPLNALFLHGW-GSSKEIMQQAFQGC-FLNYNHLY 56
SPLN+LF W +E++++AF+ FL +HLY
Sbjct: 113 SPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY 147
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 27.3 bits (59), Expect = 1.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 179 RCEKEVLLFWGKDDKATPLSSAQKMQTLLKRSVLFVLE 216
R +VL+F G+ D+ PL ++ + LK + L VL+
Sbjct: 223 RLPHDVLVFHGRQDRIVPLDTSLYLTKHLKHAELVVLD 260
>pdb|1CZM| Drug-Protein Interactions: Structure Of Sulfonamide Drug Complexed
With Human Carbonic Anhydrase I
pdb|1BZM| Drug-Protein Interactions: Structure Of Sulfonamide Drug Complexed
With Human Carbonic Anhydrase I
pdb|1HCB| Carbonic Anhydrase I (E.C.4.2.1.1) Complexed With Bicarbonate
pdb|1HUH| Carbonic Anhydrase I (E.C.4.2.1.1) Complexed With Iodide Inhibitor
pdb|1AZM| Drug-Protein Interactions: Structure Of Sulfonamide Drug Complexed
With Human Carbonic Anhydrase I
pdb|1HUG| Carbonic Anhydrase I (E.C.4.2.1.1) Complexed With Gold Cyanide
Inhibitor
Length = 260
Score = 26.6 bits (57), Expect = 2.8
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 2/51 (3%)
Query: 52 YNHLYVDLPGFNQSPNDEKVLETKDYANI--INLFLKSVGKKAHVVFGHSF 100
++ LY G NQSP D K ETK ++ I++ K + GHSF
Sbjct: 16 WSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSF 66
>pdb|1CRM| Carbonic Anhydrase I (Carbonate Dehydratase I, Hca I)
(E.C.4.2.1.1) Complexed With Mercuric Chloride
Length = 260
Score = 26.6 bits (57), Expect = 2.8
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 2/51 (3%)
Query: 52 YNHLYVDLPGFNQSPNDEKVLETKDYANI--INLFLKSVGKKAHVVFGHSF 100
++ LY G NQSP D K ETK ++ I++ K + GHSF
Sbjct: 16 WSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSF 66
>pdb|2CAB| Carbonic Anhydrase Form B (Carbonate Dehydratase) (E.C.4.2.1.1)
Length = 261
Score = 26.6 bits (57), Expect = 2.8
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 2/51 (3%)
Query: 52 YNHLYVDLPGFNQSPNDEKVLETKDYANI--INLFLKSVGKKAHVVFGHSF 100
++ LY G NQSP D K ETK ++ I++ K + GHSF
Sbjct: 17 WSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSF 67
>pdb|1JV0|A Chain A, The Crystal Structure Of The Zinc(Ii) Adduct Of The Cai
Michigan 1 Variant
pdb|1J9W|A Chain A, Solution Structure Of The Cai Michigan 1 Variant
pdb|1JV0|B Chain B, The Crystal Structure Of The Zinc(Ii) Adduct Of The Cai
Michigan 1 Variant
pdb|1J9W|B Chain B, Solution Structure Of The Cai Michigan 1 Variant
Length = 260
Score = 26.6 bits (57), Expect = 2.8
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 2/51 (3%)
Query: 52 YNHLYVDLPGFNQSPNDEKVLETKDYANI--INLFLKSVGKKAHVVFGHSF 100
++ LY G NQSP D K ETK ++ I++ K + GHSF
Sbjct: 16 WSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSF 66
>pdb|1A8Q| Bromoperoxidase A1
Length = 274
Score = 26.2 bits (56), Expect = 3.6
Identities = 13/47 (27%), Positives = 26/47 (54%), Gaps = 1/47 (2%)
Query: 172 DFSDHFKRCEKEVLLFWGKDDKATPL-SSAQKMQTLLKRSVLFVLEG 217
DF++ K+ + L+ G DD+ P+ ++ +K ++ + L V EG
Sbjct: 203 DFTEDLKKFDIPTLVVHGDDDQVVPIDATGRKSAQIIPNAELKVYEG 249
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 25.4 bits (54), Expect = 6.1
Identities = 19/62 (30%), Positives = 28/62 (44%), Gaps = 7/62 (11%)
Query: 52 YNHLYVDLPGFNQSPNDEKVLETKDYANIINLFLKSVGKKAHVVFGHSFGGKVAILCENE 111
YN V+ N S +D +VL K +I+ + K +V ++ GG LC N
Sbjct: 655 YNSKAVE-KALNSSLDDARVLINKSVQDILATY------KKEIVVSNTAGGAPLRLCANL 707
Query: 112 RM 113
RM
Sbjct: 708 RM 709
>pdb|1LJ7|A Chain A, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|B Chain B, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|C Chain C, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|D Chain D, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|E Chain E, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|F Chain F, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|G Chain G, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|H Chain H, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|I Chain I, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|J Chain J, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1B09|A Chain A, Human C-Reactive Protein Complexed With Phosphocholine
pdb|1B09|B Chain B, Human C-Reactive Protein Complexed With Phosphocholine
pdb|1B09|C Chain C, Human C-Reactive Protein Complexed With Phosphocholine
pdb|1B09|D Chain D, Human C-Reactive Protein Complexed With Phosphocholine
pdb|1B09|E Chain E, Human C-Reactive Protein Complexed With Phosphocholine
pdb|1GNH|A Chain A, Human C-Reactive Protein
pdb|1GNH|B Chain B, Human C-Reactive Protein
pdb|1GNH|C Chain C, Human C-Reactive Protein
pdb|1GNH|D Chain D, Human C-Reactive Protein
pdb|1GNH|E Chain E, Human C-Reactive Protein
pdb|1GNH|F Chain F, Human C-Reactive Protein
pdb|1GNH|G Chain G, Human C-Reactive Protein
pdb|1GNH|H Chain H, Human C-Reactive Protein
pdb|1GNH|I Chain I, Human C-Reactive Protein
pdb|1GNH|J Chain J, Human C-Reactive Protein
Length = 206
Score = 25.4 bits (54), Expect = 6.1
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 173 FSDHFKRCEKEVLLFWGKD 191
FS KR + E+L+FW KD
Sbjct: 52 FSYATKRQDNEILIFWSKD 70
>pdb|1CII| Colicin Ia
Length = 602
Score = 25.0 bits (53), Expect = 8.0
Identities = 16/38 (42%), Positives = 19/38 (49%), Gaps = 5/38 (13%)
Query: 59 LPGFNQSPNDEK-----VLETKDYANIINLFLKSVGKK 91
L G NQ +EK + TKD N FLKSV +K
Sbjct: 407 LSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEK 444
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.139 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,323,429
Number of Sequences: 13198
Number of extensions: 51648
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 12
length of query: 241
length of database: 2,899,336
effective HSP length: 86
effective length of query: 155
effective length of database: 1,764,308
effective search space: 273467740
effective search space used: 273467740
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)