BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645362|ref|NP_207536.1| phosphoribosylpyrophosphate
synthetase (prsA) [Helicobacter pylori 26695]
(318 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis... 311 8e-86
pdb|1ORO|A Chain A, A Flexible Loop At The Dimer Interface ... 37 0.002
pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyti... 35 0.011
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complex... 33 0.043
pdb|1LH0|A Chain A, Crystal Structure Of Salmonella Typhimu... 33 0.043
pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation ... 33 0.043
pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma >gi... 33 0.056
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosylt... 32 0.13
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosylt... 32 0.13
pdb|1STO| Orotate Phosphoribosyltransferase (Oprtase) (E.... 31 0.21
pdb|1GPH|1 Chain 1, Glutamine Phosphoribosylpyrophosphate (... 29 0.81
pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (... 29 0.81
pdb|1CFR| Crystal Structure Of Citrobacter Freundii Restr... 28 1.8
pdb|1HBN|A Chain A, Methyl-Coenzyme M Reductase >gi|1582679... 27 3.1
pdb|1MRO|A Chain A, Methyl-Coenzyme M Reductase >gi|3891381... 27 3.1
pdb|1GM0|A Chain A, A Form Of The Pheromone-Binding Protein... 27 3.1
pdb|1DQE|A Chain A, Bombyx Mori Pheromone Binding Protein >... 27 3.1
pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methan... 27 3.1
pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between ... 27 4.0
pdb|1HHS|A Chain A, Rna Dependent Rna Polymerase From Dsrna... 27 4.0
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 26 5.3
pdb|2DRI| D-Ribose-Binding Protein Complexed With Beta-D-... 26 5.3
pdb|1DBP| D-Ribose-Binding Protein Mutant With Gly 72 Rep... 26 5.3
pdb|1BA2|A Chain A, D67r Mutant Of D-Ribose-Binding Protein... 26 5.3
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 26 6.9
pdb|1MAB|B Chain B, Rat Liver F1-Atpase 26 6.9
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 26 6.9
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 26 6.9
pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mito... 26 6.9
pdb|1CW3|A Chain A, Human Mitochondrial Aldehyde Dehydrogen... 26 6.9
pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphori... 25 9.0
pdb|1POW|A Chain A, Pyruvate Oxidase (E.C.1.2.3.3) (Wild Ty... 25 9.0
>pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation
Length = 317
Score = 311 bits (796), Expect = 8e-86
Identities = 161/310 (51%), Positives = 218/310 (69%), Gaps = 2/310 (0%)
Query: 11 RGFKIFSGSAHPAFGKEVSKHLGFPLSKAVIGKFSDGEINIQISESVRGKDIFIIQPTCV 70
+ KIFS +++P KE++ +G L K + +FSDGE+ I I ES+RG D +IIQ T
Sbjct: 8 KNLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSD 67
Query: 71 PVNDNLMELLVMVDALRRSSANSITAVLPYFGYARQDRKAAPRVPITAKMVANLMQEVGI 130
PVN+++MELL+MVDAL+R+SA +I V+PY+GYARQDRKA R PITAK+ ANL++ G
Sbjct: 68 PVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGA 127
Query: 131 ERIITMDLHAGQIQGFFDVPVDNLYGSIVFRDYIRSKALKNPVIASPDVGGVTRARYFAN 190
R+I +DLHA QIQGFFD+P+D+L G + +Y K L++ VI SPD GGVTRAR A+
Sbjct: 128 TRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNLEDIVIVSPDHGGVTRARKLAD 187
Query: 191 QMGLDLIIVDKRREKANESEVMNIIGSAKERDVILVDDMIDTAGTICKAALALKEQGATS 250
++ + I+DKRR + N +EVMNI+G+ + + IL+DD+IDTAGTI AA AL E GA
Sbjct: 188 RLKAPIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKE 247
Query: 251 VMALGTHAVLSGNAIKRIKESALDEVVVTNSI--PLVQKCDKITTLSVAPLFAEVIRRIY 308
V A TH VLSG A++RI S + E+VVTNSI P +K ++ LSV PL AE I R++
Sbjct: 248 VYACCTHPVLSGPAVERINNSTIKELVVTNSIKLPEEKKIERFKQLSVGPLLAEAIIRVH 307
Query: 309 HNESVQSLFT 318
+SV LF+
Sbjct: 308 EQQSVSYLFS 317
>pdb|1ORO|A Chain A, A Flexible Loop At The Dimer Interface Is A Part Of The
Active Site Of The Adjacent Monomer Of Escherichia Coli
Orotate Phosphoribosyltransferase
pdb|1ORO|B Chain B, A Flexible Loop At The Dimer Interface Is A Part Of The
Active Site Of The Adjacent Monomer Of Escherichia Coli
Orotate Phosphoribosyltransferase
Length = 213
Score = 37.4 bits (85), Expect = 0.002
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 183 TRARYFANQMGLDLIIVDKRREKANESEVMNIIGSAKERDVILVDDMIDTAGTICKAAL- 241
T A A LDL R+E + E N++GSA + V+LVDD+I TAGT + ++
Sbjct: 80 TTAVALAEHHDLDLPYCFNRKEAKDHGEGGNLVGSALQGRVMLVDDVI-TAGTAIRESME 138
Query: 242 ALKEQGAT 249
++ GAT
Sbjct: 139 IIQANGAT 146
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 35.0 bits (79), Expect = 0.011
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 219 KERDVILVDDMIDTAGTICKAALALKEQGATSVMAL-------GTHAVLSGNAIKRIKES 271
+ERD I+VD M+ T G+ A ALK++GA S+ + G AV + + I +
Sbjct: 123 EERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIA 182
Query: 272 ALDE 275
ALDE
Sbjct: 183 ALDE 186
>pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 33.1 bits (74), Expect = 0.043
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 7/56 (12%)
Query: 178 DVGGVTRAR-----YFANQMGLDLIIVDKRREKANES--EVMNIIGSAKERDVILV 226
DVGG + R YF N GL ++ RE+ NE+ E+M ++ + RD +L+
Sbjct: 66 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 121
>pdb|1LH0|A Chain A, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1LH0|B Chain B, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1OPR| Mol_id: 1; Molecule: Orotate Phosphoribosyltransferase; Chain:
Null; Synonym: Oprtase; Ec: 2.4.2.10; Engineered: Yes
Length = 213
Score = 33.1 bits (74), Expect = 0.043
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 183 TRARYFANQMGLDLIIVDKRREKANESEVMNIIGSAKERDVILVDDMIDTAGTICKAAL- 241
T A A DL R+E + E +++GSA + V+LVDD+I TAGT + ++
Sbjct: 80 TTAVALAEHHDKDLPYCFNRKEAKDHGEGGSLVGSALQGRVMLVDDVI-TAGTAIRESME 138
Query: 242 ALKEQGAT 249
++ GAT
Sbjct: 139 IIQAHGAT 146
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRF| Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With
Gdp, Monomeric Crystal Form
Length = 181
Score = 33.1 bits (74), Expect = 0.043
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 7/56 (12%)
Query: 178 DVGGVTRAR-----YFANQMGLDLIIVDKRREKANES--EVMNIIGSAKERDVILV 226
DVGG + R YF N GL ++ RE+ NE+ E+M ++ + RD +L+
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 122
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 32.7 bits (73), Expect = 0.056
Identities = 29/91 (31%), Positives = 42/91 (45%), Gaps = 2/91 (2%)
Query: 12 GFKIFSGSAHPAFGKEVSKHLGFPLSKAVIGKFSDGEINIQIS-ESVRGKDIFIIQPTCV 70
G +F GS H KE+ K G P ++ V SD N + KD I
Sbjct: 222 GKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNAS 281
Query: 71 PVNDNLMELLVMVDALRRSSANSITAVLPYF 101
P+ NL+E ++++DA +R +A A PYF
Sbjct: 282 PLAVNLLEKMLVLDAEQRVTAGEALA-HPYF 311
>pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
Length = 243
Score = 31.6 bits (70), Expect = 0.13
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 219 KERDVILVDDMIDTAGTICKAALALKEQGATSVMALGTHAVLSGNAIKRI 268
+ER V+L+D M TAG++CKA L G + + + + I+R+
Sbjct: 155 RERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERV 204
>pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
Length = 224
Score = 31.6 bits (70), Expect = 0.13
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 219 KERDVILVDDMIDTAGTICKAALALKEQGATSVMALGTHAVLSGNAIKRI 268
+ER V+L+D M TAG++CKA L G + + + + I+R+
Sbjct: 136 RERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERV 185
>pdb|1STO| Orotate Phosphoribosyltransferase (Oprtase) (E.C.2.4.2.10)
Length = 213
Score = 30.8 bits (68), Expect = 0.21
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 183 TRARYFANQMGLDLIIVDKRREKANESEVMNIIGSAKERDVILVDDMIDTAGTICKAAL- 241
T A A DL R+ + E +++GSA + V+LVDD+I TAGT + ++
Sbjct: 80 TTAVALAEHHDKDLPYCFNRKAAKDHGEGGSLVGSALQGRVMLVDDVI-TAGTAIRESME 138
Query: 242 ALKEQGAT 249
++ GAT
Sbjct: 139 IIQAHGAT 146
>pdb|1GPH|1 Chain 1, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|2 Chain 2, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|3 Chain 3, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|4 Chain 4, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
Length = 465
Score = 28.9 bits (63), Expect = 0.81
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 203 REKANESEVMNIIGSAKERDVILVDDMIDTAGTICKAALALKEQGATSVMALGTHAVLSG 262
RE+ ++ + G + + V++VDD I T + L+E GAT V + ++
Sbjct: 321 REQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAH 380
Query: 263 NAIKRIKESALDEVVV-TNSIPLVQK---CDKITTLSVAPLFAEVIRR 306
I S +E++ ++S+ +++ D ++ LSV L + R+
Sbjct: 381 PCFYGIDTSTHEELIASSHSVDEIRQEIGADTLSFLSVEGLLKGIGRK 428
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 28.9 bits (63), Expect = 0.81
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 203 REKANESEVMNIIGSAKERDVILVDDMIDTAGTICKAALALKEQGATSVMALGTHAVLSG 262
RE+ ++ + G + + V++VDD I T + L+E GAT V + ++
Sbjct: 321 REQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAH 380
Query: 263 NAIKRIKESALDEVVV-TNSIPLVQK---CDKITTLSVAPLFAEVIRR 306
I S +E++ ++S+ +++ D ++ LSV L + R+
Sbjct: 381 PCFYGIDTSTHEELIASSHSVEEIRQEIGADTLSFLSVEGLLKGIGRK 428
>pdb|1CFR| Crystal Structure Of Citrobacter Freundii Restriction Endonuclease
Cfr10i At 2.15 Angstroms Resolution
Length = 285
Score = 27.7 bits (60), Expect = 1.8
Identities = 15/42 (35%), Positives = 22/42 (51%)
Query: 247 GATSVMALGTHAVLSGNAIKRIKESALDEVVVTNSIPLVQKC 288
G V+ L T A S +K + +SA+DE+ NS+ V C
Sbjct: 237 GNADVIGLKTVATHSITDVKSLPQSAVDEIFKINSVLDVDSC 278
>pdb|1HBN|A Chain A, Methyl-Coenzyme M Reductase
pdb|1HBN|D Chain D, Methyl-Coenzyme M Reductase
pdb|1HBO|A Chain A, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBO|D Chain D, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBM|A Chain A, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBM|D Chain D, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBU|A Chain A, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|1HBU|D Chain D, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
Length = 549
Score = 26.9 bits (58), Expect = 3.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 167 KALKNPVIASPDVGGVTRARYFANQMGLDLIIVDKRREKANESEVMNIIGSAKERDVI 224
+ ++ P I S G T +R+ A Q+G+ +I K + A E+ + +AK +VI
Sbjct: 205 QVVRIPTIVSRTCDGATTSRWSAMQIGMSMISAYK--QAAGEAATGDFAYAAKXAEVI 260
>pdb|1MRO|A Chain A, Methyl-Coenzyme M Reductase
pdb|1MRO|D Chain D, Methyl-Coenzyme M Reductase
Length = 548
Score = 26.9 bits (58), Expect = 3.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 167 KALKNPVIASPDVGGVTRARYFANQMGLDLIIVDKRREKANESEVMNIIGSAKERDVI 224
+ ++ P I S G T +R+ A Q+G+ +I K + A E+ + +AK +VI
Sbjct: 205 QVVRIPTIVSRTCDGATTSRWSAMQIGMSMISAYK--QAAGEAATGDFAYAAKXAEVI 260
>pdb|1GM0|A Chain A, A Form Of The Pheromone-Binding Protein From Bombyx Mori
Length = 142
Score = 26.9 bits (58), Expect = 3.1
Identities = 17/55 (30%), Positives = 25/55 (44%), Gaps = 9/55 (16%)
Query: 262 GNAIKRIKESALDEVVVTNSIPLVQKCDKIT---------TLSVAPLFAEVIRRI 307
GNA++ K+ DE + I +V C+K T TL VA F I ++
Sbjct: 71 GNAMEFAKKHGADETMAQQLIDIVHGCEKSTPANDDKCIWTLGVATCFKAEIHKL 125
>pdb|1DQE|A Chain A, Bombyx Mori Pheromone Binding Protein
pdb|1DQE|B Chain B, Bombyx Mori Pheromone Binding Protein
Length = 137
Score = 26.9 bits (58), Expect = 3.1
Identities = 17/55 (30%), Positives = 25/55 (44%), Gaps = 9/55 (16%)
Query: 262 GNAIKRIKESALDEVVVTNSIPLVQKCDKIT---------TLSVAPLFAEVIRRI 307
GNA++ K+ DE + I +V C+K T TL VA F I ++
Sbjct: 71 GNAMEFAKKHGADETMAQQLIDIVHGCEKSTPANDDKCIWTLGVATCFKAEIHKL 125
>pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|B Chain B, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 433
Score = 26.9 bits (58), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 135 TMDLHAGQIQGFFDVPVDN 153
TMDL GQ+QG +P +N
Sbjct: 163 TMDLMGGQVQGILSIPQNN 181
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
Length = 182
Score = 26.6 bits (57), Expect = 4.0
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 221 RDVILVDDMIDTAGTICKA--ALALKEQGATSVMAL 254
+DV++V+D+ID+ T+ K L+L+E + ++ L
Sbjct: 97 KDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTL 132
>pdb|1HHS|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHS|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHS|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHT|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HHT|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HHT|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HI0|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI0|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI0|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI1|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1HI1|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1HI1|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
Length = 664
Score = 26.6 bits (57), Expect = 4.0
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 112 PRVPITAKMVANLMQEVGIERIITMDLHAGQIQGFFDVPVDNLYGSIVFRDYIRSKALK- 170
P +P T + +NL + DL G + DNL +FR +R
Sbjct: 94 PMIPATWPLASNLKKRADA------DLADGPVS-----ERDNL----LFRAAVRLMFSDL 138
Query: 171 NPVIASPDVGGVTRARYFANQMGLDLIIVDKRREKANES 209
PV G T YF+N MG + I ++ EKA E+
Sbjct: 139 EPVPLKIRKGSSTCIPYFSNDMGTKIEIAERALEKAEEA 177
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.2 bits (56), Expect = 5.3
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 181 GVTRARYFANQMGLD-LIIVDK-RREKANESEVMNIIG---SAKERDVILVDDMIDTAGT 235
G+T A YF +Q G D L+ +D R SEV ++G SA L DM GT
Sbjct: 240 GLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM----GT 295
Query: 236 ICKAALALKEQGATSVMALGTHA 258
+ + K+ TSV A+ A
Sbjct: 296 MQERITTTKKGSITSVQAIXVPA 318
>pdb|2DRI| D-Ribose-Binding Protein Complexed With Beta-D-Ribose
pdb|1URP|A Chain A, D-Ribose-Binding Protein From Escherichia Coli
pdb|1URP|B Chain B, D-Ribose-Binding Protein From Escherichia Coli
pdb|1URP|C Chain C, D-Ribose-Binding Protein From Escherichia Coli
pdb|1URP|D Chain D, D-Ribose-Binding Protein From Escherichia Coli
Length = 271
Score = 26.2 bits (56), Expect = 5.3
Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Query: 133 IITMDLHAGQIQGFFDVPVDNLYGSIVFRDYIRSKALKN-PVIASPDVGGVTRAR 186
+IT+D A + + + DN+ G + DYI KA + VI + G + AR
Sbjct: 85 VITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAAR 139
>pdb|1DBP| D-Ribose-Binding Protein Mutant With Gly 72 Replaced By Asp (G72d)
Length = 271
Score = 26.2 bits (56), Expect = 5.3
Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Query: 133 IITMDLHAGQIQGFFDVPVDNLYGSIVFRDYIRSKALKN-PVIASPDVGGVTRAR 186
+IT+D A + + + DN+ G + DYI KA + VI + G + AR
Sbjct: 85 VITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAAR 139
>pdb|1BA2|A Chain A, D67r Mutant Of D-Ribose-Binding Protein From Escherichia
Coli
pdb|1BA2|B Chain B, D67r Mutant Of D-Ribose-Binding Protein From Escherichia
Coli
Length = 271
Score = 26.2 bits (56), Expect = 5.3
Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Query: 133 IITMDLHAGQIQGFFDVPVDNLYGSIVFRDYIRSKALKN-PVIASPDVGGVTRAR 186
+IT+D A + + + DN+ G + DYI KA + VI + G + AR
Sbjct: 85 VITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAAR 139
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 25.8 bits (55), Expect = 6.9
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 181 GVTRARYFANQMGLD-LIIVDK-RREKANESEVMNIIG---SAKERDVILVDDMIDTAGT 235
G+T A YF +Q G D L+ +D R SEV ++G SA L DM GT
Sbjct: 240 GLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM----GT 295
Query: 236 ICKAALALKEQGATSVMAL 254
+ + K+ TSV A+
Sbjct: 296 MQERITTTKKGSITSVQAI 314
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
Length = 479
Score = 25.8 bits (55), Expect = 6.9
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 181 GVTRARYFANQMGLD-LIIVDK-RREKANESEVMNIIG---SAKERDVILVDDMIDTAGT 235
G+T A YF +Q G D L+ +D R SEV ++G SA L DM GT
Sbjct: 236 GLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM----GT 291
Query: 236 ICKAALALKEQGATSVMAL 254
+ + K+ TSV A+
Sbjct: 292 MQERITTTKKGSITSVQAI 310
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 25.8 bits (55), Expect = 6.9
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 181 GVTRARYFANQMGLD-LIIVDK-RREKANESEVMNIIG---SAKERDVILVDDMIDTAGT 235
G+T A YF +Q G D L+ +D R SEV ++G SA L DM GT
Sbjct: 240 GLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM----GT 295
Query: 236 ICKAALALKEQGATSVMAL 254
+ + K+ TSV A+
Sbjct: 296 MQERITTTKKGSITSVQAI 314
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 482
Score = 25.8 bits (55), Expect = 6.9
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 181 GVTRARYFANQMGLD-LIIVDK-RREKANESEVMNIIG---SAKERDVILVDDMIDTAGT 235
G+T A YF +Q G D L+ +D R SEV ++G SA L DM GT
Sbjct: 240 GLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM----GT 295
Query: 236 ICKAALALKEQGATSVMAL 254
+ + K+ TSV A+
Sbjct: 296 MQERITTTKKGSITSVQAI 314
>pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1A4Z|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
Length = 499
Score = 25.8 bits (55), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 109 KAAPRVPITAKMVANLMQEVG 129
K A + P+TA VANL++E G
Sbjct: 191 KVAEQTPLTALYVANLIKEAG 211
>pdb|1CW3|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
Length = 494
Score = 25.8 bits (55), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 109 KAAPRVPITAKMVANLMQEVG 129
K A + P+TA VANL++E G
Sbjct: 186 KVAEQTPLTALYVANLIKEAG 206
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 25.4 bits (54), Expect = 9.0
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 25/93 (26%)
Query: 201 KRREKANESEVMNI-IGS-AKERDVILVDDMIDTAGTICKAALALKEQGATSVMALGTHA 258
++ K EVM I GS K V+L+DD++ T GT
Sbjct: 117 EKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGT----------------------- 153
Query: 259 VLSGNAIKRIKESALDEVVVTNSIPLVQKCDKI 291
LSG + ++ + E+V SIP ++ +KI
Sbjct: 154 ALSGLQLVEASDAVVVEMVSILSIPFLKAAEKI 186
>pdb|1POW|A Chain A, Pyruvate Oxidase (E.C.1.2.3.3) (Wild Type)
pdb|1POW|B Chain B, Pyruvate Oxidase (E.C.1.2.3.3) (Wild Type)
Length = 585
Score = 25.4 bits (54), Expect = 9.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 139 HAGQIQGFFDVPVDNLYGSIVFRD-YIRSKALKNPVIASPDVGGVTR 184
+A Q +PVD + I D Y + + + P++ PDV VTR
Sbjct: 150 YAHQGVAVVQIPVDLPWQQIPAEDWYASANSYQTPLLPEPDVQAVTR 196
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.137 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,570,388
Number of Sequences: 13198
Number of extensions: 59214
Number of successful extensions: 221
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 34
length of query: 318
length of database: 2,899,336
effective HSP length: 88
effective length of query: 230
effective length of database: 1,737,912
effective search space: 399719760
effective search space used: 399719760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)