BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645363|ref|NP_207537.1| rod shape-determining
protein (mreB) [Helicobacter pylori 26695]
         (381 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1LOX|    Rabbit Reticulocyte 15-Lipoxygenase                   26  8.6
pdb|1QUA|A  Chain A, Crystal Structure Of Acutolysin-C, A He...    26  8.6

>pdb|1LOX|   Rabbit Reticulocyte 15-Lipoxygenase
          Length = 662

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 4/42 (9%)

Query: 89  LGAQRWLVIPFISITLQPSEPVKIAILLLLAHLIKI--NPPP 128
           L  Q++L  P + + LQP    K+  +++  HL KI  +PPP
Sbjct: 290 LYCQQYLAAPLVMLKLQPDG--KLMPMVIQLHLPKIGSSPPP 329



>pdb|1QUA|A Chain A, Crystal Structure Of Acutolysin-C, A Hemorrhagic Toxin
           From The Snake Venom Of Agkistrodon Acutus, At 2.2 A
           Resolution
          Length = 197

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 11/38 (28%), Positives = 21/38 (54%)

Query: 281 HLFFYLFESNSDWFLKIVALGISILIFVYSSVNIAMTL 318
           H  +  + SNS      +   ++I+  +YSS+N+ +TL
Sbjct: 15  HSMYAKYNSNSSKITTTLKARVNIMNAIYSSLNLVITL 52



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.335    0.151    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,049,538
Number of Sequences: 13198
Number of extensions: 79712
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 2
length of query: 381
length of database: 2,899,336
effective HSP length: 90
effective length of query: 291
effective length of database: 1,711,516
effective search space: 498051156
effective search space used: 498051156
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)