BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645364|ref|NP_207538.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(327 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyper... 28 1.1
pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexe... 28 1.4
pdb|1C8U|A Chain A, Crystal Structure Of The E.Coli Thioest... 28 1.9
pdb|1JNK| The C-Jun N-Terminal Kinase (Jnk3s) Complexed W... 27 4.2
pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase... 26 5.5
pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj B... 26 5.5
pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lys... 26 5.5
pdb|1QCX|A Chain A, Pectin Lyase B 25 9.3
>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
Bacterium
Length = 212
Score = 28.5 bits (62), Expect = 1.1
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 13/59 (22%)
Query: 227 LIGAKLFTGR--THQIRAHLEYLNRHIIGDNLYGLNGALPKEEIRIMLHAYLIEFKHPR 283
++G +F+GR + + AH N+Y L G +P I HAY +++K+ R
Sbjct: 130 ILGLDIFSGRLVVNGLDAH-----------NVYNLTGLIPLIVIDTYEHAYYVDYKNKR 177
>pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|H Chain H, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|B Chain B, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|F Chain F, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|G Chain G, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|C Chain C, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|E Chain E, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|D Chain D, Crystal Structure Of The Mrp14 Complexed With Chaps
Length = 113
Score = 28.1 bits (61), Expect = 1.4
Identities = 16/53 (30%), Positives = 26/53 (48%)
Query: 266 EEIRIMLHAYLIEFKHPRSEQKLRFKVPLLKDMLEYLKKVFDKENLDEVLDEE 318
E I H Y ++ HP + + FK + KD+ +LKK E + E + E+
Sbjct: 12 ETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMED 64
>pdb|1C8U|A Chain A, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
pdb|1C8U|B Chain B, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
Length = 285
Score = 27.7 bits (60), Expect = 1.9
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 213 SEFISLLTSQNNLNLIGAKLFTGRTHQIRAHLEYLNRHIIGDNLYGLNGALPKEEIRIML 272
S+ + L + NL I LF G++ + + ++G LY +P+E +
Sbjct: 1 SQALKNLLTLLNLEKIEEGLFRGQSEDLGLR-QVFGGQVVGQALYAAKETVPEERLVHSF 59
Query: 273 HAYLIEFKHPRSEQKLRFKVPLLKD 297
H+Y + + S++ + + V L+D
Sbjct: 60 HSYFL--RPGDSKKPIIYDVETLRD 82
>pdb|1JNK| The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp
Length = 422
Score = 26.6 bits (57), Expect = 4.2
Identities = 13/40 (32%), Positives = 20/40 (49%)
Query: 93 PPNLVVHKALSVKEPTLVDWLEFKNYELSNLGLKERYGIV 132
PP + K L +E T+ +W E E+ N K + G+V
Sbjct: 371 PPPQIYDKQLDEREHTIEEWKELIYKEVMNSEEKTKNGVV 410
>pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1119
Score = 26.2 bits (56), Expect = 5.5
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 4/43 (9%)
Query: 42 KKEVKKGGLALKEGDEITLLTPKITPKPLKKELDLEIEVIFED 84
K+EV+ L+ +++ L+TP TP+ KEL L+ +V+ D
Sbjct: 938 KREVE----VLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYD 976
>pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj Bound To Manganese
Length = 424
Score = 26.2 bits (56), Expect = 5.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 70 LKKELDLEIEVIFEDEDLLVLNKPPNLVVHKALS 103
L++ L+ +EVI D PP LVVH AL+
Sbjct: 106 LRELLENGVEVIVTDHHTPGKTPPPGLVVHPALT 139
>pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme
Length = 883
Score = 26.2 bits (56), Expect = 5.5
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 46 KKGGLALKEGDEITLLTPKITP------KPLKKELDLEIEVIFEDEDLLVLNKPPNLVVH 99
KK G L++ + +TP P KP++ L+L F + + NK + H
Sbjct: 713 KKTGEILRKRSAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAH 772
Query: 100 KALSVKEPTLVDWLEFKNYELSNLGLKERYGI 131
K S P V + + + + E+YGI
Sbjct: 773 KQESGIAPNFVHSQDGSHLRKTVVWAHEKYGI 804
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 25.4 bits (54), Expect = 9.3
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 214 EFISLLTSQNNLNLIGAKLFTGRT---------HQIRAHLEYLNRHII--GDNLYGLNGA 262
+ I L TS +N I L GR+ H +L+ N + G+ Y L+G
Sbjct: 177 QHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGR 236
Query: 263 LPKEEIRIMLHA 274
+PK + +LHA
Sbjct: 237 MPKVQGNTLLHA 248
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,835,249
Number of Sequences: 13198
Number of extensions: 78352
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 9
length of query: 327
length of database: 2,899,336
effective HSP length: 88
effective length of query: 239
effective length of database: 1,737,912
effective search space: 415360968
effective search space used: 415360968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)