BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645365|ref|NP_207539.1| hypothetical protein
[Helicobacter pylori 26695]
(419 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cu... 30 0.66
pdb|1BPV| Titin Module A71 From Human Cardiac Muscle, Nmr... 30 0.66
pdb|1FNF| Fragment Of Human Fibronectin Encompassing Type... 27 3.3
pdb|1JI5|A Chain A, Dlp-1 From Bacillus Anthracis >gi|21730... 26 7.3
pdb|1CPN| Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-G... 26 9.6
>pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 29.6 bits (65), Expect = 0.66
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 298 LTRYYKVVALDKTHLEGALPKEPAMGETADRPEAPIITKGTIQDSSALIQWENNPSAKIA 357
++RY++VV L + +T + E P+I + DSS +P A
Sbjct: 107 ISRYHQVVLHQGRIERHILDSIAEISDTRIKVERPLIPEKMEIDSSKA----EDPEAYPV 162
Query: 358 TYAVYRFEANSKTPLRFGNITKNQFVDKDMK 388
T + + TPL+FG+ T+N +++
Sbjct: 163 TMTLRYMSDHESTPLQFGHKTENSLFHSNLQ 193
>pdb|1BPV| Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures
Length = 112
Score = 29.6 bits (65), Expect = 0.66
Identities = 25/93 (26%), Positives = 44/93 (46%), Gaps = 13/93 (13%)
Query: 327 DRPEAPI---ITKGTIQDSSALIQW---ENNPSAKIATYAVYRFEANSKTPLR--FGNIT 378
D P P+ IT+ T+ ++W E KI +Y V + + + L+ F NI
Sbjct: 12 DPPGKPVPLNITRHTVT-----LKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNIL 66
Query: 379 KNQFVDKDMKVGVAYRYQVVSVDKDGLESHPSK 411
+N+F + AY ++V++ + G S PS+
Sbjct: 67 ENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSE 99
>pdb|1FNF| Fragment Of Human Fibronectin Encompassing Type-Iii Repeats 7
Through 10
Length = 368
Score = 27.3 bits (59), Expect = 3.3
Identities = 63/324 (19%), Positives = 126/324 (38%), Gaps = 36/324 (11%)
Query: 106 EGLETESSYTYQLATYKGDKIS-NLSDPILVKTSFINPVESVFASLEYPKSVKVFWSPHP 164
+ L Y + T K DK S +SD I+ P + F ++ P +++V W+P P
Sbjct: 63 DNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVP--PPTDLRFTNIG-PDTMRVTWAPPP 119
Query: 165 NPSVSKYIIQ----RQNKDGKFLNVGAVRNRLFVEFFDKDLEDGKKYRYQVIAENFMGDK 220
+ ++ ++++ + +D L++ N + + +L G +Y V + +
Sbjct: 120 SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVL----TNLLPGTEYVVSVSSVY----E 171
Query: 221 SRPSVIVEGKTKDLPKEITNVRVSQNLTRHIELSWDKSTQEDVIAYRI------YASNNR 274
S + G+ K T + S + W + + + YRI ++ R
Sbjct: 172 QHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHW-IAPRATITGYRIRHHPEHFSGRPR 230
Query: 275 NDKYKFIAQTTNTSYVDKIEKDNLTRYYKVVALDKTHLEGALPKEPAMGETADRPEAP-I 333
D+ + + N+ I NLT + V + L G +G+ + + P
Sbjct: 231 EDR---VPHSRNS-----ITLTNLTPGTEYV-VSIVALNGREESPLLIGQQSTVSDVPRD 281
Query: 334 ITKGTIQDSSALIQWENNPSAKIATYAVYRFEANSKTPLRFGNI--TKNQFVDKDMKVGV 391
+ +S LI W+ P+ + Y + E +P++ + +K+ +K GV
Sbjct: 282 LEVVAATPTSLLISWD-APAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGV 340
Query: 392 AYRYQVVSVDKDGLESHPSKEVRL 415
Y V +V G SK + +
Sbjct: 341 DYTITVYAVTGRGDSPASSKPISI 364
Score = 25.8 bits (55), Expect = 9.6
Identities = 12/31 (38%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 239 TNVRVSQNL-TRHIELSWDKSTQEDVIAYRI 268
TN+ + N T + +SW++ST D+ YRI
Sbjct: 6 TNLHLEANPDTGVLTVSWERSTTPDITGYRI 36
>pdb|1JI5|A Chain A, Dlp-1 From Bacillus Anthracis
pdb|1JI5|B Chain B, Dlp-1 From Bacillus Anthracis
pdb|1JI5|C Chain C, Dlp-1 From Bacillus Anthracis
pdb|1JI5|D Chain D, Dlp-1 From Bacillus Anthracis
Length = 142
Score = 26.2 bits (56), Expect = 7.3
Identities = 16/44 (36%), Positives = 26/44 (58%)
Query: 284 TTNTSYVDKIEKDNLTRYYKVVALDKTHLEGALPKEPAMGETAD 327
T + +++D+I + L K VA K +LE + +E A GETA+
Sbjct: 44 TESATHIDEIAERILAIGGKPVATMKEYLEISSIQEAAYGETAE 87
>pdb|1CPN| Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-Glucanohydrolase
(E.C.3.2.1.73) (Cpa16m-57)
Length = 208
Score = 25.8 bits (55), Expect = 9.6
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 23/114 (20%)
Query: 59 VSSVGFEWPKIADTYDID---GFILYRLKKDSKLKRIATIKNPYATHYYDEGLETESSYT 115
V S+GF+ K TY D G+I + + D LK AT P L +
Sbjct: 75 VISLGFDASKGFHTYAFDWQPGYIKWYV--DGVLKHTATANIPSTPGKIMMNLWNGTGVD 132
Query: 116 YQLATYKGDKISNLSDPILVKTSFINPVESVFASLEYPKSVKVFWSP--HPNPS 167
L +Y G NP+ + + ++Y + VFW P + NPS
Sbjct: 133 DWLGSYNG----------------ANPLYAEYDWVKYTSNGSVFWEPKSYFNPS 170
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,484,545
Number of Sequences: 13198
Number of extensions: 107084
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 6
length of query: 419
length of database: 2,899,336
effective HSP length: 91
effective length of query: 328
effective length of database: 1,698,318
effective search space: 557048304
effective search space used: 557048304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)