BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645367|ref|NP_207541.1| cell division protein
(ftsE) [Helicobacter pylori 26695]
(223 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 137 1e-33
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 135 3e-33
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 100 1e-22
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 94 1e-20
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 65 5e-12
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 64 2e-11
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 62 5e-11
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 56 3e-09
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 47 2e-06
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 41 1e-04
pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Gua... 31 0.10
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Ki... 31 0.10
pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Co... 30 0.22
pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Ra... 29 0.50
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase >... 29 0.50
pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests... 27 1.4
pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyri... 27 2.5
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 26 4.2
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 26 4.2
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 26 4.2
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 26 4.2
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 26 4.2
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts >gi|11514... 25 5.5
pdb|3ADK| Adenylate Kinase (E.C.2.7.4.3) 25 5.5
pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed Wi... 25 5.5
pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp... 25 5.5
pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts B... 25 7.2
pdb|5LDH| Lactate Dehydrogenase H4 And S-lac-NAD+ Complex... 25 9.4
pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H C... 25 9.4
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 137 bits (344), Expect = 1e-33
Identities = 89/225 (39%), Positives = 131/225 (57%), Gaps = 11/225 (4%)
Query: 4 IIAANNLCLQYQQNEPVI---KHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLKLFSG 60
+I N+ Y+ E +I K+ NL IK +FV I GPSGSGKST+L K G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 61 KLEVCNINMNNASKATILDLRKN-IGVVFQDYKLIQDYTIEQNIKLPMVIC---GIKKEE 116
++ + NI N+ + +R++ IG VFQ + LI T +N++LP++ + EE
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 117 CHLQLEKLLGHIDLRHK-ANRYPKELSGGEQQRVAMARAMANCPELILADEPTGNLDDYS 175
+ + L +L + AN P +LSGG+QQRVA+ARA+AN P +ILAD+PTG LD +
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 176 SDKIWSLLRGMNTQLNATIVVVTHKFPKNFSAY-HRKFYIEDGEV 219
+KI LL+ +N + T+VVVTH N + + R Y++DGEV
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 135 bits (341), Expect = 3e-33
Identities = 90/224 (40%), Positives = 128/224 (56%), Gaps = 11/224 (4%)
Query: 5 IAANNLCLQYQQNEPVI---KHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLKLFSGK 61
I N+ Y+ E +I K+ NL IK +FV I GPSGSGKST L K G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 62 LEVCNINMNNASKATILDLRKN-IGVVFQDYKLIQDYTIEQNIKLPMVIC---GIKKEEC 117
+ + NI N+ + +R++ IG VFQ + LI T +N++LP++ EE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 118 HLQLEKLLGHIDLRHK-ANRYPKELSGGEQQRVAMARAMANCPELILADEPTGNLDDYSS 176
+ + L +L + AN P +LSGG+QQRVA+ARA+AN P +ILADEPTG LD +
Sbjct: 122 RKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTG 181
Query: 177 DKIWSLLRGMNTQLNATIVVVTHKFPKNFSAY-HRKFYIEDGEV 219
+KI LL+ +N + T+VVVTH N + + R Y++DGEV
Sbjct: 182 EKIXQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEV 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 100 bits (250), Expect = 1e-22
Identities = 56/180 (31%), Positives = 100/180 (55%), Gaps = 1/180 (0%)
Query: 21 IKHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLKLFSGKLEVCNINMNNASKATILDL 80
++ +L +K +F+ + GPSG GK+T LR G + G++ + + + + K +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 81 R-KNIGVVFQDYKLIQDYTIEQNIKLPMVICGIKKEECHLQLEKLLGHIDLRHKANRYPK 139
+ ++I +VFQ Y L T+ NI P+ + + ++E ++ ++ + L NR P+
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 140 ELSGGEQQRVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMNTQLNATIVVVTH 199
ELSGG++QRVA+ RA+ P++ L DEP NLD ++ + L+ + QL T + VTH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 94.4 bits (233), Expect = 1e-20
Identities = 68/216 (31%), Positives = 116/216 (53%), Gaps = 17/216 (7%)
Query: 20 VIKHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLKLFSGKLEVCNINMNN-------- 71
V+K +L+ + D + I G SGSGKST LR K G + V N+N
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 72 --ASKATILDLRKNIGVVFQDYKLIQDYTIEQNI-KLPMVICGIKKEECHLQLEKLLGHI 128
A K + LR + +VFQ + L T+ +N+ + P+ + G+ K + + K L +
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140
Query: 129 DLRHKAN-RYPKELSGGEQQRVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMN 187
+ +A +YP LSGG+QQRV++ARA+A P+++L DEPT LD ++ +++ +
Sbjct: 141 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL- 199
Query: 188 TQLNATIVVVTHK--FPKNFSAYHRKFYIEDGEVYE 221
+ T+VVVTH+ F ++ S++ ++ G++ E
Sbjct: 200 AEEGKTMVVVTHEMGFARHVSSH--VIFLHQGKIEE 233
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 65.5 bits (158), Expect = 5e-12
Identities = 49/191 (25%), Positives = 94/191 (48%), Gaps = 20/191 (10%)
Query: 25 NLRIKRKDFVFISGPSGSGKSTLLRSFYGDLKLFSGKLEVCNINMNNASKATILDLRKNI 84
++ + + D I GP+GSGKSTL+ G LK G++ N ++ N A + +
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY----HY 82
Query: 85 GVV--FQDYKLIQDYTIEQNIKLPMVICGI-------------KKEECHLQLEKLLGHID 129
G+V FQ + +++ T+ +N+ + + G K+EE + K+L +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 130 LRHKANRYPKELSGGEQQRVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMNTQ 189
L H +R ELSGG+ + V + RA+ P++I+ DEP + + I++ + + +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 190 LNATIVVVTHK 200
T +++ H+
Sbjct: 203 -GITFLIIEHR 212
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 63.5 bits (153), Expect = 2e-11
Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 20/191 (10%)
Query: 25 NLRIKRKDFVFISGPSGSGKSTLLRSFYGDLKLFSGKLEVCNINMNNASKATILDLRKNI 84
++ + + D I GP+GSGKSTL+ G LK G++ N ++ N A + +
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY----HY 82
Query: 85 GVV--FQDYKLIQDYTIEQNIKLPMVICGI-------------KKEECHLQLEKLLGHID 129
G+V FQ + +++ T+ +N+ + + G K+EE + K+L +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 130 LRHKANRYPKELSGGEQQRVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMNTQ 189
L H +R ELSGG+ + V + RA+ P++I+ D+P + + I++ + + +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 190 LNATIVVVTHK 200
T +++ H+
Sbjct: 203 -GITFLIIEHR 212
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 62.0 bits (149), Expect = 5e-11
Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 5/200 (2%)
Query: 21 IKHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLKLFSGKLEVCNINMNNASKATILDL 80
IK +L++ R V + G +G+GK+T L + G ++ GK+ ++ N I
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN-- 79
Query: 81 RKNIGVVFQDYKLIQDYTIEQNIKLPMVICGIKKEECHLQLEKLLGHID-LRHKANRYPK 139
R I +V + ++ + T+ +N+ KE LE + L+ + +
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXG-AYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 140 ELSGGEQQRVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMNTQLNATIVVVTH 199
LSGGEQQ +A+ RA+ + P+L+ DEP+ L +++ +++ +N Q TI++V
Sbjct: 139 TLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKIN-QEGTTILLVEQ 197
Query: 200 KFPKNFSAYHRKFYIEDGEV 219
H + +E G++
Sbjct: 198 NALGALKVAHYGYVLETGQI 217
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 56.2 bits (134), Expect = 3e-09
Identities = 55/214 (25%), Positives = 97/214 (44%), Gaps = 23/214 (10%)
Query: 19 PVIKHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLKLFSGKLEVCNINMNNASKATIL 78
P +++ NL+I V + G SGSGKST+ + G++ + + ++ + T+
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILM---DGHDLREYTLA 413
Query: 79 DLRKNIGVVFQDYKLIQDYTIEQNIKLPMVICGIKKEECHLQLE---KLLGHIDLRHKAN 135
LR + +V Q+ L D T+ NI ++ Q+E ++ +D +K +
Sbjct: 414 SLRNQVALVSQNVHLFND-TVANNIAYART-----EQYSREQIEEAARMAYAMDFINKMD 467
Query: 136 RYPKE--------LSGGEQQRVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMN 187
LSGG++QR+A+ARA+ +++ DE T LD S I + L +
Sbjct: 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL- 526
Query: 188 TQLNATIVVVTHKFPKNFSAYHRKFYIEDGEVYE 221
Q N T +V+ H+ +EDG + E
Sbjct: 527 -QKNRTSLVIAHRL-STIEKADEIVVVEDGVIVE 558
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 46.6 bits (109), Expect = 2e-06
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 19/212 (8%)
Query: 20 VIKHANLRIKRKDFVFISGPSGSGKST---LLRSFY----GDLKLFSGKLEVCNINMNNA 72
V++ ++ + + GP+GSGKST LL++ Y G L L L +
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 73 SKATILDLRKNIGVVFQD---YKLIQDYTIEQNIKLPMVICGIKKEECHLQLEKLLGHID 129
A + + G Q+ Y L Q T+E+ + K H + L D
Sbjct: 92 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE------ITAAAVKSGAHSFISGLPQGYD 145
Query: 130 LRHKANRYPKELSGGEQQRVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMNTQ 189
+ + +LSGG++Q VA+ARA+ P +++ D+ T LD S ++ LL +
Sbjct: 146 T--EVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPER 203
Query: 190 LNATIVVVTHKFPKNFSAYHRKFYIEDGEVYE 221
+ +++++T A H F +E G + E
Sbjct: 204 YSRSVLLITQHLSLVEQADHILF-LEGGAIRE 234
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 41.2 bits (95), Expect = 1e-04
Identities = 52/202 (25%), Positives = 83/202 (40%), Gaps = 25/202 (12%)
Query: 28 IKRKDFVFISGPSGSGKSTLLRSFYGDLKLFSGKLEVCNINMNNASKATILDLRKNIGVV 87
++ + + + GP+G+GKSTLL G G ++ + A AT L L +
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPLE-AWSATKLALHRAY--- 77
Query: 88 FQDYKLIQDYTIEQNIKLPMVICGIKKEECHLQL-EKLLGHIDLRHKANRYPKELSGGEQ 146
L Q T + + + ++ +L + G + L K R +LSGGE
Sbjct: 78 -----LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEW 132
Query: 147 QRVAMARAMAN-------CPELILADEPTGNLD---DYSSDKIWSLLRGMNTQLNATIVV 196
QRV +A + +L+L DEP +LD + DKI S L Q IV
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL----CQQGLAIVX 188
Query: 197 VTHKFPKNFSAYHRKFYIEDGE 218
+H HR + ++ G+
Sbjct: 189 SSHDLNHTLRHAHRAWLLKGGK 210
>pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Guanosine
Monophosphate
Length = 187
Score = 31.2 bits (69), Expect = 0.10
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 34 VFISGPSGSGKSTLLRSFYGD 54
+ ISGPSG+GKSTLL+ + +
Sbjct: 5 IVISGPSGTGKSTLLKKLFAE 25
>pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
Length = 186
Score = 31.2 bits (69), Expect = 0.10
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 34 VFISGPSGSGKSTLLRSFYGD 54
+ ISGPSG+GKSTLL+ + +
Sbjct: 4 IVISGPSGTGKSTLLKKLFAE 24
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 30.0 bits (66), Expect = 0.22
Identities = 23/88 (26%), Positives = 37/88 (41%)
Query: 34 VFISGPSGSGKSTLLRSFYGDLKLFSGKLEVCNINMNNASKATILDLRKNIGVVFQDYKL 93
+F+ GP G+GKST+ R L + + A + DL G ++ K+
Sbjct: 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKV 66
Query: 94 IQDYTIEQNIKLPMVICGIKKEECHLQL 121
I + T +Q I L +K E +L
Sbjct: 67 INELTEKQGIVLATGGGSVKSRETRNRL 94
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 28.9 bits (63), Expect = 0.50
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 141 LSGGEQQ------RVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMNTQLNATI 194
LSGGE+ R+AM+ +A L++ DEPT LD+ K+ +++ ++ I
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 195 VVVTHKFPKNFSAYHRKFYIEDG 217
+V + K+ + + + +E+G
Sbjct: 144 LVSHDEELKDAADHVIRISLENG 166
>pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|B Chain B, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 28.9 bits (63), Expect = 0.50
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 141 LSGGEQQ------RVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMNTQLNATI 194
LSGGE+ R+AM+ +A L++ DEPT LD+ K+ +++ ++ I
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 195 VVVTHKFPKNFSAYHRKFYIEDG 217
+V + K+ + + + +E+G
Sbjct: 118 LVSHDEELKDAADHVIRISLENG 140
>pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
Is Achieved
Length = 482
Score = 27.3 bits (59), Expect = 1.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 120 QLEKLLGHIDLRHKANRYPKELSGGEQQRVAMARAMANCPELI--LADEPTGNLDDYSSD 177
++EKLL ++A +P L EQQR R PE + ADE + Y+ D
Sbjct: 402 RIEKLL----FNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADD 457
Query: 178 K 178
K
Sbjct: 458 K 458
>pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
pdb|1J90|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
Length = 230
Score = 26.6 bits (57), Expect = 2.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 34 VFISGPSGSGKSTLLRSF---YGDLKLFSGKLEVCNINMNNASKATILDLR----KNIGV 86
V I G GSGK+T L F D+ L + +E N + +L+L K +
Sbjct: 23 VLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVE----KWRNVNGVNLLELMYKDPKKWAM 78
Query: 87 VFQDY---KLIQDYTIEQNIKLPMV 108
FQ Y ++Q +T N KL ++
Sbjct: 79 PFQSYVTLTMLQSHTAPTNKKLKIM 103
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 25.8 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 21 IKHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLK 56
++ A +R + D V ++GP G GK+TL +L+
Sbjct: 41 LEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 25.8 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 21 IKHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLK 56
++ A +R + D V ++GP G GK+TL +L+
Sbjct: 41 LEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 25.8 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 21 IKHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLK 56
++ A +R + D V ++GP G GK+TL +L+
Sbjct: 41 LEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 25.8 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 21 IKHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLK 56
++ A +R + D V ++GP G GK+TL +L+
Sbjct: 41 LEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 25.8 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 21 IKHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLK 56
++ A +R + D V ++GP G GK+TL +L+
Sbjct: 41 LEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76
>pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
Length = 649
Score = 25.4 bits (54), Expect = 5.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 32 DFVFISGPSGSGKSTLLR 49
+ V I+GP+ +GKST LR
Sbjct: 461 ELVLITGPNXAGKSTFLR 478
>pdb|3ADK| Adenylate Kinase (E.C.2.7.4.3)
Length = 195
Score = 25.4 bits (54), Expect = 5.5
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 27 RIKRKDFVFISGPSGSGKSTLLRSF---YGDLKLFSGKLEVCNINMNNA 72
++K+ +F+ G GSGK T YG L +G L ++ +A
Sbjct: 5 KLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSA 53
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 25.4 bits (54), Expect = 5.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 32 DFVFISGPSGSGKSTLLR 49
+ V I+GP+ +GKST LR
Sbjct: 577 ELVLITGPNXAGKSTFLR 594
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 25.4 bits (54), Expect = 5.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 32 DFVFISGPSGSGKSTLLR 49
+ V I+GP+ +GKST LR
Sbjct: 577 ELVLITGPNXAGKSTFLR 594
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 25.0 bits (53), Expect = 7.2
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 17 NEPVIKHA-NLRIKRKDFVFISGPSGSGKSTLLR 49
NEP I + NL +R+ + I+GP+ GKST R
Sbjct: 593 NEPFIANPLNLSPQRRXLI-ITGPNXGGKSTYXR 625
>pdb|5LDH| Lactate Dehydrogenase H4 And S-lac-NAD+ Complex (E.C.1.1.1.27)
Length = 334
Score = 24.6 bits (52), Expect = 9.4
Identities = 13/59 (22%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 74 KATILDLRKNIGVVFQDYKLI--QDYTIEQNIKLPMVICGIKKEECHLQLEKLLGHIDL 130
K ++DL+ + Q K++ +DY++ N K+ +V G++++E +L + ++++
Sbjct: 60 KGEMMDLQHG-SLFLQTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNV 117
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 24.6 bits (52), Expect = 9.4
Identities = 13/59 (22%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 74 KATILDLRKNIGVVFQDYKLI--QDYTIEQNIKLPMVICGIKKEECHLQLEKLLGHIDL 130
K ++DL+ + Q K++ +DY++ N K+ +V G++++E +L + ++++
Sbjct: 59 KGEMMDLQHG-SLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNV 116
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,296,467
Number of Sequences: 13198
Number of extensions: 52223
Number of successful extensions: 169
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 31
length of query: 223
length of database: 2,899,336
effective HSP length: 85
effective length of query: 138
effective length of database: 1,777,506
effective search space: 245295828
effective search space used: 245295828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)