BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645368|ref|NP_207542.1| cell division membrane
protein (ftsX) [Helicobacter pylori 26695]
         (268 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1CO6|A  Chain A, Crystal Structure Of Ferrocytochrome C2...    26  4.2

>pdb|1CO6|A Chain A, Crystal Structure Of Ferrocytochrome C2 From
           Rhodopseudomonas Viridis
 pdb|1IO3|A Chain A, Crystal Structure Of Ferricytochrome C2 From
           Rhodopseudomonas Viridis
 pdb|1CRY|   Cytochrome C2
          Length = 107

 Score = 26.2 bits (56), Expect = 4.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 113 ENIKEKLLKIPGVQKVEVFAKTYMQVYDLLSFIK 146
           E I++   KIPG + +    K   +V DL+++IK
Sbjct: 65  EYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIK 98



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.327    0.142    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,317,839
Number of Sequences: 13198
Number of extensions: 47825
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 1
length of query: 268
length of database: 2,899,336
effective HSP length: 87
effective length of query: 181
effective length of database: 1,751,110
effective search space: 316950910
effective search space used: 316950910
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)