BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645369|ref|NP_207543.1| hypothetical protein
[Helicobacter pylori 26695]
(400 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 42 1e-04
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 32 0.13
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 32 0.13
pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes I... 30 0.48
pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Co... 29 0.82
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 28 1.8
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 27 5.3
pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Co... 26 9.1
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.... 26 9.1
pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (S... 26 9.1
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 42.0 bits (97), Expect = 1e-04
Identities = 52/258 (20%), Positives = 108/258 (41%), Gaps = 56/258 (21%)
Query: 13 LSANTQKVSDIAKD----IQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKAEMERQ 68
L+A Q++ +I + I+ +E ++ EK ++ ++ L E + +E + +++ +
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977
Query: 69 MIALKKSLEKNRNESLAQEKVLTNYRKSLDHLQKKRSFLQKRVFDTLLQDFLFSQALKGQ 128
+ ++K ++ L E + L K+R L++RV D L L + K +
Sbjct: 978 KVTADGKIKKMEDDILIMED-------QNNKLTKERKLLEERVSD--LTTNLAEEEEKAK 1028
Query: 129 NLASSNDVVLQVAFENLHQSTLSKMS-QLSQEEK------------------------EL 163
NL +N H+S +S++ +L +EEK EL
Sbjct: 1029 NLTK---------LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079
Query: 164 NTQALKVKNSIQK--------ISSIIDEQKTREVTLKSLKTEQDKLILSMQKDYAIYNQR 215
Q ++K + K ++ + DE + LK ++ E + I +Q+D
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR-ELESHISDLQEDLESEKAA 1138
Query: 216 LTLLEKERQNLNALLKRL 233
EK++++L+ L+ L
Sbjct: 1139 RNKAEKQKRDLSEELEAL 1156
Score = 31.6 bits (70), Expect = 0.17
Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 28/186 (15%)
Query: 18 QKVSDIAKDIQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKAEMERQMIALKKSLE 77
++VSD+ ++ +E K + KN+ S +S L ++ +E + E+E+ +K+ LE
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK----IKRKLE 1066
Query: 78 ---KNRNESLAQEKVLTNYRKSLDHLQKKRSFLQKRVFDTLLQDFLFSQALKGQNLASSN 134
+ +E +A+ + K+ L KK LQ + L+D + K L
Sbjct: 1067 GESSDLHEQIAELQAQIAELKA--QLAKKEEELQAAL--ARLED---ETSQKNNALKKIR 1119
Query: 135 DVVLQVAFENLHQSTLSKMSQLSQEEKELNTQALKVKNSIQKISSIIDEQKTR-EVTLKS 193
++ +S +S + + + EK +A K K + +S ++ KT E TL +
Sbjct: 1120 EL----------ESHISDLQEDLESEKAARNKAEKQK---RDLSEELEALKTELEDTLDT 1166
Query: 194 LKTEQD 199
T+Q+
Sbjct: 1167 TATQQE 1172
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 32.0 bits (71), Expect = 0.13
Identities = 15/82 (18%), Positives = 40/82 (48%)
Query: 18 QKVSDIAKDIQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKAEMERQMIALKKSLE 77
+++ + +++ E +K +++++ + L + ++ E + ER + L+KS++
Sbjct: 195 EEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID 254
Query: 78 KNRNESLAQEKVLTNYRKSLDH 99
+E AQ+ + LDH
Sbjct: 255 DLEDELYAQKLKYKAISEELDH 276
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 32.0 bits (71), Expect = 0.13
Identities = 15/82 (18%), Positives = 40/82 (48%)
Query: 18 QKVSDIAKDIQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKAEMERQMIALKKSLE 77
+++ + +++ E +K +++++ + L + ++ E + ER + L+KS++
Sbjct: 195 EEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID 254
Query: 78 KNRNESLAQEKVLTNYRKSLDH 99
+E AQ+ + LDH
Sbjct: 255 DLEDELYAQKLKYKAISEELDH 276
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
Length = 329
Score = 30.0 bits (66), Expect = 0.48
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 81 NESLAQE-KVLTNYRKSLDHLQKKRSFLQKRVFDTLLQDFLFSQAL-------KGQNLAS 132
NE+L ++ K++ +Y D L+KK V TLL+ FLF L +
Sbjct: 138 NENLQRKAKIIMSYYNGDDPLKKK-------VASTLLESFLFYSGFYLPMYLSSRAKLTN 190
Query: 133 SNDVV-LQVAFENLH--------QSTLSKMSQLSQEEKELNTQALK---VKNSIQKISSI 180
+ D++ L + E++H Q + K+S+ QEE + T L +N I+ I
Sbjct: 191 TADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDI 250
Query: 181 IDEQKTREVTLKSLKTEQDKLI 202
D+ E + L+ +K +
Sbjct: 251 YDDLGWTEDVKRFLRYNANKAL 272
>pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Cortexillin I
pdb|1D7M|B Chain B, Coiled-Coil Dimerization Domain From Cortexillin I
Length = 101
Score = 29.3 bits (64), Expect = 0.82
Identities = 21/97 (21%), Positives = 52/97 (52%), Gaps = 7/97 (7%)
Query: 19 KVSDIAKDIQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKAEMERQMIALKKSLEK 78
+++ + ++ ++ ++ ++K+QLNS L+SL +E + E+E ++ K+LE
Sbjct: 5 RLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLEL 64
Query: 79 NRNESLAQEKVLTNYRKSLDHLQKKRSFLQKRVFDTL 115
E LA+ ++ K+ +K R+ L+ ++ + +
Sbjct: 65 ---EKLARMELEARLAKT----EKDRAILELKLAEAI 94
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 28.1 bits (61), Expect = 1.8
Identities = 45/210 (21%), Positives = 91/210 (42%), Gaps = 25/210 (11%)
Query: 33 LLKKTHEEKNQLNSRLSSLGEAIRSK-------ELQKAEMERQMIALKKSLEKNRNESLA 85
LLKK +E +L + S E + K + ++ Q++ LK+ LE L
Sbjct: 33 LLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEXELIH-LG 91
Query: 86 QEKVLTNYRKSLDHLQKKRSFLQKRVFDTLLQDFLFSQALKGQNLASSNDVVLQVAFENL 145
+E R+ H ++ + + + + + + +ALK + ++ D+ ++ + L
Sbjct: 92 EEYHDGIRRRKEQHATEQTAKITELAREKQIAEL---KALKESSESNIKDIKKKLEAKRL 148
Query: 146 HQ------STLSKMSQLSQEEKELNTQALKVKNSIQKISSIID-----EQKTREVTLKSL 194
+ ST K +Q + +KE+N ++ +Q I + + +QK E ++L
Sbjct: 149 DRIQVXXRSTSDKAAQ-ERLKKEINNS--HIQEVVQTIKLLTEKTARYQQKLEEKQAENL 205
Query: 195 KTEQDKLILSMQKDYAIYNQRLTLLEKERQ 224
+ Q+K Q+ A Y ++L L E Q
Sbjct: 206 RAIQEKEGQLQQEAVAEYEEKLKTLTVEVQ 235
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 26.6 bits (57), Expect = 5.3
Identities = 22/63 (34%), Positives = 31/63 (48%), Gaps = 7/63 (11%)
Query: 191 LKSLKTEQDKLILSMQKDYAIYNQRLTLLEKERQNLNALLKRLNIIKQNRENEEKVSLKK 250
+K L E+D L KD N+ L +EK +N A KR N+ +Q NE+K+ K
Sbjct: 249 IKELNEERDIL----NKDL---NKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGK 301
Query: 251 SSQ 253
Q
Sbjct: 302 RLQ 304
>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 114
Score = 25.8 bits (55), Expect = 9.1
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 25 KDIQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKAEMERQMIALKKSLEK 78
K ++H E ++K ++ +LN L+ + + K+LQ + + +K ++E+
Sbjct: 11 KKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQ 64
>pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
Length = 1733
Score = 25.8 bits (55), Expect = 9.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 156 LSQEEKELNTQALKVKNSIQKISSIIDEQKTREVTLKSLKTEQD 199
L E EL QAL +K+S ++ ++I KT+ V + +E D
Sbjct: 114 LLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDD 157
>pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna
Ligase) Complexed With Seryl-Hydroxamate-Amp
pdb|1SES|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna
Ligase) Complexed With Seryl-Hydroxamate-Amp
pdb|1SET|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna
Ligase) Complexed With
5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
pdb|1SET|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna
Ligase) Complexed With
5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
pdb|1SRY|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11)
pdb|1SRY|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11)
pdb|1SER|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
Trna-Ser 2 (Gga Anticodon)
pdb|1SER|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
Trna-Ser 2 (Gga Anticodon)
Length = 421
Score = 25.8 bits (55), Expect = 9.1
Identities = 23/76 (30%), Positives = 35/76 (45%), Gaps = 8/76 (10%)
Query: 5 GVFLLATLLSANTQKVSDIAKDIQHKET--------LLKKTHEEKNQLNSRLSSLGEAIR 56
GV L L A ++V ++ K +Q +T + K EEK L +R +LGE +
Sbjct: 22 GVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAK 81
Query: 57 SKELQKAEMERQMIAL 72
E E E ++ AL
Sbjct: 82 RLEEALREKEARLEAL 97
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.130 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,805,808
Number of Sequences: 13198
Number of extensions: 62345
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 14
length of query: 400
length of database: 2,899,336
effective HSP length: 90
effective length of query: 310
effective length of database: 1,711,516
effective search space: 530569960
effective search space used: 530569960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)