BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645370|ref|NP_207544.1| polar flagellin (flaG)
[Helicobacter pylori 26695]
(119 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QCS|A Chain A, N-Terminal Domain Of N-Ethylmaleimide S... 30 0.094
pdb|1QDN|C Chain C, Amino Terminal Domain Of The N-Ethylmal... 29 0.16
pdb|1APY|B Chain B, Human Aspartylglucosaminidase >gi|19428... 28 0.36
pdb|1ESC| Mol_id: 1; Molecule: Esterase; Chain: Null >gi|... 26 1.0
pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. J... 25 2.3
pdb|1HTZ|A Chain A, Crystal Structure Of Tem52 Beta-Lactama... 25 2.3
pdb|1JWZ|A Chain A, Crystal Structure Of Tem-64 Beta-Lactam... 25 2.3
pdb|1JDF|B Chain B, Glucarate Dehydratase From E.Coli N341d... 24 4.0
pdb|1QO8|A Chain A, The Structure Of The Open Conformation ... 24 4.0
pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf 24 5.2
pdb|1CK3|A Chain A, N276d Mutant Of Escherichia Coli Tem-1 ... 24 5.2
pdb|1I27|A Chain A, Crystal Structure Of The C-Terminal Dom... 24 5.2
pdb|1BT5|A Chain A, Crystal Structure Of The Imipenem Inhib... 24 5.2
pdb|1CFM|A Chain A, Cytochrome F From Chlamydomonas Reinhar... 23 6.7
pdb|1E2V|A Chain A, N153q Mutant Of Cytochrome F From Chlam... 23 6.7
pdb|1JTD|A Chain A, Crystal Structure Of Beta-Lactamase Inh... 23 6.7
pdb|1LI9|A Chain A, Crystal Structure Of Tem-34 Beta-Lactam... 23 6.7
pdb|1LI0|A Chain A, Crystal Structure Of Tem-32 Beta-Lactam... 23 6.7
pdb|1JVJ|A Chain A, Crystal Structure Of N132a Mutant Of Te... 23 6.7
pdb|1LHY|A Chain A, Crystal Structure Of Tem-30 Beta-Lactam... 23 6.7
pdb|1JWP|A Chain A, Structure Of M182t Mutant Of Tem-1 Beta... 23 6.7
pdb|1FQG|A Chain A, Molecular Structure Of The Acyl-Enzyme ... 23 6.7
pdb|1ERM|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta L... 23 6.7
pdb|1ESU|A Chain A, S235a Mutant Of Tem1 Beta-Lactamase 23 6.7
pdb|1JWI|A Chain A, Crystal Structure Of Bitiscetin, A Von ... 23 6.7
pdb|1ERQ|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta L... 23 6.7
pdb|1E2W|A Chain A, N168f Mutant Of Cytochrome F From Chlam... 23 6.7
pdb|1E2Z|A Chain A, Q158l Mutant Of Cytochrome F From Chlam... 23 6.7
pdb|1JWV|A Chain A, Crystal Structure Of G238a Mutant Of Te... 23 6.7
pdb|1LDG| Plasmodium Falciparum L-Lactate Dehydrogenase C... 23 8.8
pdb|1CZ4|A Chain A, Nmr Structure Of Vat-N: The N-Terminal ... 23 8.8
pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Bindi... 23 8.8
>pdb|1QCS|A Chain A, N-Terminal Domain Of N-Ethylmaleimide Sensitive Factor
(Nsf)
Length = 211
Score = 29.6 bits (65), Expect = 0.094
Identities = 21/78 (26%), Positives = 37/78 (46%), Gaps = 4/78 (5%)
Query: 23 KEISRTNTINTVDESKTTIDPDQY---KPKLELLSERLNEEMKRIGTDINFSYNDTIKGL 79
K+ T TI K ID + Y K E + ++ N + +G + FS+ND + GL
Sbjct: 93 KQCIGTXTIEIDFLQKKNIDSNPYDTDKXAAEFI-QQFNNQAFSVGQQLVFSFNDKLFGL 151
Query: 80 VVSVKDANGDKVIREIPS 97
+V +A +++ P+
Sbjct: 152 LVKDIEAXDPSILKGEPA 169
>pdb|1QDN|C Chain C, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
pdb|1QDN|A Chain A, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
pdb|1QDN|B Chain B, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
Length = 204
Score = 28.9 bits (63), Expect = 0.16
Identities = 21/78 (26%), Positives = 37/78 (46%), Gaps = 4/78 (5%)
Query: 23 KEISRTNTINTVDESKTTIDPDQY---KPKLELLSERLNEEMKRIGTDINFSYNDTIKGL 79
K+ T TI K ID + Y K E + ++ N + +G + FS+ND + GL
Sbjct: 90 KQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFI-QQFNNQAFSVGQQLVFSFNDKLFGL 148
Query: 80 VVSVKDANGDKVIREIPS 97
+V +A +++ P+
Sbjct: 149 LVKDIEAMDPSILKGEPA 166
>pdb|1APY|B Chain B, Human Aspartylglucosaminidase
pdb|1APY|D Chain D, Human Aspartylglucosaminidase
pdb|1APZ|B Chain B, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|D Chain D, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 141
Score = 27.7 bits (60), Expect = 0.36
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 2/39 (5%)
Query: 71 SYNDTIKGLVVSVKDANGDKVIREIPSKEAVELMQRMRD 109
+Y D G + NGD ++R +PS +AVE M+R D
Sbjct: 40 AYADDTAGAAAAT--GNGDILMRFLPSYQAVEYMRRGED 76
>pdb|1ESC| Mol_id: 1; Molecule: Esterase; Chain: Null
pdb|1ESD| Mol_id: 1; Molecule: Esterase; Chain: Null; Heterogen: Methyl
Phosphonate
pdb|1ESE| Mol_id: 1; Molecule: Esterase; Chain: Null; Heterogen: Diethyl
Phosphonate
Length = 306
Score = 26.2 bits (56), Expect = 1.0
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 43 PDQYKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPSKEAVE 102
P P L+ + +RLN+ MK+ D + D G + D+ I + +E
Sbjct: 213 PQDALPVLDQIQKRLNDAMKKAAADGGADFVDLYAGTGANTACDGADRGIGGLLEDSQLE 272
Query: 103 LM 104
L+
Sbjct: 273 LL 274
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 25.0 bits (53), Expect = 2.3
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 31 INTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDK 90
I DE K+T D + ++L E + ++ N+ L +VKD +K
Sbjct: 68 IALADEVKSTTXADINRRAIKLAKENI-----KLNNLDNYDIRVVHSDLYENVKDRKYNK 122
Query: 91 VIREIPSKEAVELMQRM 107
+I P + E++ R+
Sbjct: 123 IITNPPIRAGKEVLHRI 139
>pdb|1HTZ|A Chain A, Crystal Structure Of Tem52 Beta-Lactamase
pdb|1HTZ|B Chain B, Crystal Structure Of Tem52 Beta-Lactamase
pdb|1HTZ|C Chain C, Crystal Structure Of Tem52 Beta-Lactamase
pdb|1HTZ|D Chain D, Crystal Structure Of Tem52 Beta-Lactamase
pdb|1HTZ|E Chain E, Crystal Structure Of Tem52 Beta-Lactamase
pdb|1HTZ|F Chain F, Crystal Structure Of Tem52 Beta-Lactamase
Length = 263
Score = 25.0 bits (53), Expect = 2.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND +K V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCS 99
>pdb|1JWZ|A Chain A, Crystal Structure Of Tem-64 Beta-Lactamase In Complex
With A Boronic Acid Inhibitor (105)
Length = 263
Score = 25.0 bits (53), Expect = 2.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND +K V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCS 99
>pdb|1JDF|B Chain B, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 442
Score = 24.3 bits (51), Expect = 4.0
Identities = 12/38 (31%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
Query: 80 VVSVKDANGDKVIREIPSKEAVELMQRMRDVIGIIFDK 117
+V +KD +G + EIP EA+ + + D I ++ K
Sbjct: 36 IVIIKDNSGHTGVGEIPGGEAIR--KTLEDAIPLVVGK 71
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 24.3 bits (51), Expect = 4.0
Identities = 11/57 (19%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 64 IGTDINFSYNDTIKGLVVSVKDANGDKVIREIPSKEAVE--LMQRMRDVIGIIFDKR 118
+G D ++T++G+ + + +G++ I E+ +++ ++++ IIFD +
Sbjct: 363 VGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQPGQFAWIIFDNQ 419
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 23.9 bits (50), Expect = 5.2
Identities = 9/17 (52%), Positives = 14/17 (81%)
Query: 96 PSKEAVELMQRMRDVIG 112
PSKEA L++++RD+ G
Sbjct: 101 PSKEAQSLLEQIRDIDG 117
>pdb|1CK3|A Chain A, N276d Mutant Of Escherichia Coli Tem-1 Beta-Lactamase
Length = 263
Score = 23.9 bits (50), Expect = 5.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1I27|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Rap74
Subunit Of Human Transcription Factor Iif (Tfiif)
Length = 73
Score = 23.9 bits (50), Expect = 5.2
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 23 KEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYND 74
K ++ + + KT + +Q L + +RLN E K I ++FS +
Sbjct: 22 KPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE 73
>pdb|1BT5|A Chain A, Crystal Structure Of The Imipenem Inhibited Tem-1 Beta-
Lactamase From Escherichia Coli
pdb|1BTL| Beta-Lactamase Tem1 (E.C.3.5.2.6)
pdb|1AXB| Tem-1 Beta-Lactamase From Escherichia Coli Inhibited With An
Acylation Transition State Analog
pdb|1TEM| 6 Alpha Hydroxymethyl Penicilloic Acid Acylated On The Tem-1
Beta-Lactamase From Escherichia Coli
pdb|1JTG|A Chain A, Crystal Structure Of Tem-1 Beta-Lactamase
BETA-Lactamase Inhibitor Protein Complex
pdb|1JTG|C Chain C, Crystal Structure Of Tem-1 Beta-Lactamase
BETA-Lactamase Inhibitor Protein Complex
Length = 263
Score = 23.9 bits (50), Expect = 5.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1CFM|A Chain A, Cytochrome F From Chlamydomonas Reinhardtii
pdb|1CFM|B Chain B, Cytochrome F From Chlamydomonas Reinhardtii
pdb|1CFM|C Chain C, Cytochrome F From Chlamydomonas Reinhardtii
pdb|1EWH|A Chain A, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
pdb|1EWH|B Chain B, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
pdb|1EWH|C Chain C, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
Length = 251
Score = 23.5 bits (49), Expect = 6.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 78 GLVVSVKDANGDKVIREIPS 97
G VS++ ANG+ V+ +IP+
Sbjct: 191 GFEVSIEKANGEVVVDKIPA 210
>pdb|1E2V|A Chain A, N153q Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2V|B Chain B, N153q Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2V|C Chain C, N153q Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
Length = 251
Score = 23.5 bits (49), Expect = 6.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 78 GLVVSVKDANGDKVIREIPS 97
G VS++ ANG+ V+ +IP+
Sbjct: 191 GFEVSIEKANGEVVVDKIPA 210
>pdb|1JTD|A Chain A, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1LI9|A Chain A, Crystal Structure Of Tem-34 Beta-Lactamase At 1.5
Angstrom
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1LI0|A Chain A, Crystal Structure Of Tem-32 Beta-Lactamase At 1.6
Angstrom
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1JVJ|A Chain A, Crystal Structure Of N132a Mutant Of Tem-1
Beta-Lactamase In Complex With A
N-Formimidoyl-Thienamycine
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1LHY|A Chain A, Crystal Structure Of Tem-30 Beta-Lactamase At 2.0
Angstrom
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1JWP|A Chain A, Structure Of M182t Mutant Of Tem-1 Beta-Lactamase
pdb|1M40|A Chain A, Ultra High Resolution Crystal Structure Of Tem-1
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1FQG|A Chain A, Molecular Structure Of The Acyl-Enzyme Intermediate In
Tem- 1 Beta-Lactamase
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1ERM|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In
Complex With A Designed Boronic Acid Inhibitor
(1r)-1-Acetamido-2- (3-Carboxyphenyl)ethane Boronic
Acid
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1ESU|A Chain A, S235a Mutant Of Tem1 Beta-Lactamase
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1JWI|A Chain A, Crystal Structure Of Bitiscetin, A Von Willeband Factor-
Dependent Platelet Aggregation Inducer
Length = 131
Score = 23.5 bits (49), Expect = 6.7
Identities = 12/38 (31%), Positives = 19/38 (49%)
Query: 35 DESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSY 72
DESKT Q+ ++ E ++E K G D++ Y
Sbjct: 72 DESKTQQCSPQWTDGSSVVYENVDEPTKCFGLDVHTEY 109
>pdb|1ERQ|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In
Complex With A Designed Boronic Acid Inhibitor
(1r)-1-Acetamido-2- (3-Carboxy-2-Hydroxyphenyl)ethyl
Boronic Acid
pdb|1XPB| Structure Of Beta-Lactamase Tem1
pdb|1ERO|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In
Complex With A Designed Boronic Acid Inhibitor (1r)-2-
Phenylacetamido-2-(3-Carboxyphenyl)ethyl Boronic Acid
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1E2W|A Chain A, N168f Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2W|B Chain B, N168f Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
Length = 251
Score = 23.5 bits (49), Expect = 6.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 78 GLVVSVKDANGDKVIREIPS 97
G VS++ ANG+ V+ +IP+
Sbjct: 191 GFEVSIEKANGEVVVDKIPA 210
>pdb|1E2Z|A Chain A, Q158l Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2Z|B Chain B, Q158l Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2Z|C Chain C, Q158l Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
Length = 251
Score = 23.5 bits (49), Expect = 6.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 78 GLVVSVKDANGDKVIREIPS 97
G VS++ ANG+ V+ +IP+
Sbjct: 191 GFEVSIEKANGEVVVDKIPA 210
>pdb|1JWV|A Chain A, Crystal Structure Of G238a Mutant Of Tem-1
Beta-Lactamase In Complex With A Boronic Acid Inhibitor
(Sefb4)
Length = 263
Score = 23.5 bits (49), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 56 RLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPS 97
R++ +++G I++S ND ++ V+ K +RE+ S
Sbjct: 58 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCS 99
>pdb|1LDG| Plasmodium Falciparum L-Lactate Dehydrogenase Complexed With
Nadh And Oxamate
pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 23.1 bits (48), Expect = 8.8
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 3 NEVQGIGIPTSHTSVQTTPTKEISRTNTINTVDESKTTI 41
N G + TSHT+V ++S +NT + + S I
Sbjct: 39 NMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGSDVVI 77
>pdb|1CZ4|A Chain A, Nmr Structure Of Vat-N: The N-Terminal Domain Of Vat (Vcp-
Like Atpase Of Thermoplasma)
pdb|1CZ5|A Chain A, Nmr Structure Of Vat-N: The N-Terminal Domain Of Vat (Vcp-
Like Atpase Of Thermoplasma)
Length = 185
Score = 23.1 bits (48), Expect = 8.8
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 27 RTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKR--IGTDINFSYNDTIKGLVVSVK 84
+ + T K T+ P K + E + E ++R I + N ++ GL ++ +
Sbjct: 86 KVRKVRTEIAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIRRPMLEQDNISVPGLTLAGQ 145
Query: 85 DANGDKVIREIPSKEAVEL 103
KV++ +PSK VE+
Sbjct: 146 TGLLFKVVKTLPSKVPVEI 164
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 23.1 bits (48), Expect = 8.8
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 3 NEVQGIGIPTSHTSVQTTPTKEISRTNTINTVDESKTTI 41
N G + TSHT+V ++S +NT + + S I
Sbjct: 39 NMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGSDVVI 77
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.132 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,956
Number of Sequences: 13198
Number of extensions: 23892
Number of successful extensions: 87
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 32
length of query: 119
length of database: 2,899,336
effective HSP length: 77
effective length of query: 42
effective length of database: 1,883,090
effective search space: 79089780
effective search space used: 79089780
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)