BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645372|ref|NP_207546.1| flagellar protein (fliS)
[Helicobacter pylori 26695]
(126 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BET... 27 0.69
pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-... 27 0.69
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bo... 27 0.69
pdb|2BCT| The Armadillo Repeat Region From Murine Beta-Ca... 27 0.69
pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And H... 27 0.69
pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninIC... 27 0.69
pdb|1KQ3|A Chain A, Crystal Structure Of Glycerol Dehydroge... 26 1.2
pdb|3BCT| The Armadillo Repeat Region From Murine Beta-Ca... 26 1.5
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Dom... 25 2.0
pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5 25 2.6
pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate... 25 3.4
pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate... 25 3.4
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 24 4.5
pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With ... 24 5.9
pdb|1LF8|A Chain A, Complex Of Gga3-Vhs Domain And Ci-Mpr C... 23 7.7
pdb|1EBO|A Chain A, Crystal Structure Of The Ebola Virus Me... 23 10.0
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 26.9 bits (58), Expect = 0.69
Identities = 17/55 (30%), Positives = 30/55 (53%)
Query: 62 TELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEA 116
T L N+L +++G ++AV L G + +L + NV+ A D + +A G E+
Sbjct: 127 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 181
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
Length = 532
Score = 26.9 bits (58), Expect = 0.69
Identities = 17/55 (30%), Positives = 30/55 (53%)
Query: 62 TELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEA 116
T L N+L +++G ++AV L G + +L + NV+ A D + +A G E+
Sbjct: 125 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 179
>pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With Beta-
Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With Beta-
Catenin
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
Length = 538
Score = 26.9 bits (58), Expect = 0.69
Identities = 17/55 (30%), Positives = 30/55 (53%)
Query: 62 TELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEA 116
T L N+L +++G ++AV L G + +L + NV+ A D + +A G E+
Sbjct: 124 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 178
>pdb|2BCT| The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 26.9 bits (58), Expect = 0.69
Identities = 17/55 (30%), Positives = 30/55 (53%)
Query: 62 TELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEA 116
T L N+L +++G ++AV L G + +L + NV+ A D + +A G E+
Sbjct: 108 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 162
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 26.9 bits (58), Expect = 0.69
Identities = 17/55 (30%), Positives = 30/55 (53%)
Query: 62 TELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEA 116
T L N+L +++G ++AV L G + +L + NV+ A D + +A G E+
Sbjct: 123 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 26.9 bits (58), Expect = 0.69
Identities = 17/55 (30%), Positives = 30/55 (53%)
Query: 62 TELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEA 116
T L N+L +++G ++AV L G + +L + NV+ A D + +A G E+
Sbjct: 108 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 162
>pdb|1KQ3|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Tm0423) From
Thermotoga Maritima At 1.5 A Resolution
Length = 376
Score = 26.2 bits (56), Expect = 1.2
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 23 LIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVY 79
L + YE +L + AKR +E + + + ++ + T LL+ L +E GG A +
Sbjct: 212 LARLCYETLLEYGVLAKRSVEEKSVTPA---LEKIVEANT-LLSGLGFESGGLAAAH 264
>pdb|3BCT| The Armadillo Repeat Region From Murine Beta-Catenin
Length = 457
Score = 25.8 bits (55), Expect = 1.5
Identities = 17/55 (30%), Positives = 29/55 (51%)
Query: 62 TELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEA 116
T L N+L +++G + AV L G + +L + NV+ A D + +A G E+
Sbjct: 65 TTLHNLLLHQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQILAYGNQES 119
>pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 25.4 bits (54), Expect = 2.0
Identities = 23/60 (38%), Positives = 30/60 (49%), Gaps = 4/60 (6%)
Query: 52 YYINRVTDIFTELLNIL--DYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNV 109
Y R IF I+ E+G L+GLY + +KVL A ENDA+ I +V NV
Sbjct: 118 YPAGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMA-AENDAN-IAIVGNV 175
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
Length = 473
Score = 25.0 bits (53), Expect = 2.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 46 DIEKKIYYINRVTDIFTELLNILDYEK 72
D+ + Y+I + TDI T L ++L EK
Sbjct: 352 DVRFRNYFIPKGTDIITSLTSVLHDEK 378
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 24.6 bits (52), Expect = 3.4
Identities = 17/73 (23%), Positives = 38/73 (51%), Gaps = 15/73 (20%)
Query: 44 NEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGL--YTHQIKVLTQANVENDAS 101
N ++EKK YY++ + D+ Y++ +++++ + H I + A ++ D
Sbjct: 180 NPELEKKGYYVDSLDDL---------YKQADVISLHVPDVPANVHMINDESIAKMKQDV- 229
Query: 102 KIDLVLNVARGLL 114
+++NV+RG L
Sbjct: 230 ---VIVNVSRGPL 239
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 24.6 bits (52), Expect = 3.4
Identities = 17/73 (23%), Positives = 38/73 (51%), Gaps = 15/73 (20%)
Query: 44 NEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGL--YTHQIKVLTQANVENDAS 101
N ++EKK YY++ + D+ Y++ +++++ + H I + A ++ D
Sbjct: 180 NPELEKKGYYVDSLDDL---------YKQADVISLHVPDVPANVHMINDESIAKMKQDV- 229
Query: 102 KIDLVLNVARGLL 114
+++NV+RG L
Sbjct: 230 ---VIVNVSRGPL 239
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 24.3 bits (51), Expect = 4.5
Identities = 23/95 (24%), Positives = 41/95 (42%), Gaps = 19/95 (20%)
Query: 22 KLIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYL- 80
K+I + E +L F + K+ + N E K+Y L+ +YEK +V YL
Sbjct: 785 KMIPLAVEKLLDFDNTLKKNLLNYIDENKLY-----------LIGSAEYEK-SKVNKYLK 832
Query: 81 ------TGLYTHQIKVLTQANVENDASKIDLVLNV 109
+YT+ ++ N N +++LN+
Sbjct: 833 TIMPFDLSIYTNDTILIEMFNKYNSEILNNIILNL 867
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 23.9 bits (50), Expect = 5.9
Identities = 7/21 (33%), Positives = 16/21 (75%)
Query: 43 ENEDIEKKIYYINRVTDIFTE 63
+N ++EKK YY++ + D++ +
Sbjct: 179 KNPELEKKGYYVDSLDDLYKQ 199
>pdb|1LF8|A Chain A, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|B Chain B, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|C Chain C, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|D Chain D, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
Length = 171
Score = 23.5 bits (49), Expect = 7.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 10 YQHNRVSVESPAKLIEMLYEGILRFSSQAK 39
Y +RVS + K+IE+LY + +AK
Sbjct: 106 YLGDRVSEKVKTKVIELLYSWTMALPEEAK 135
>pdb|1EBO|A Chain A, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
pdb|1EBO|C Chain C, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
pdb|1EBO|F Chain F, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
pdb|1EBO|E Chain E, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
pdb|1EBO|B Chain B, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
pdb|1EBO|D Chain D, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
Length = 131
Score = 23.1 bits (48), Expect = 10.0
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 95 NVENDASKIDLVLNVARGLLEAWREIHSD 123
++EN+ ++I ++ A GL+E R++ ++
Sbjct: 17 HIENEIARIKKLIGEADGLIEGLRQLANE 45
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 677,382
Number of Sequences: 13198
Number of extensions: 22948
Number of successful extensions: 64
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 16
length of query: 126
length of database: 2,899,336
effective HSP length: 78
effective length of query: 48
effective length of database: 1,869,892
effective search space: 89754816
effective search space used: 89754816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)