BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645373|ref|NP_207547.1| hypothetical protein
[Helicobacter pylori 26695]
(79 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey D... 28 0.14
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Del... 28 0.24
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 26 0.90
pdb|1MAB|B Chain B, Rat Liver F1-Atpase 26 0.90
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 26 0.90
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 26 0.90
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 26 0.90
pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck >gi|2... 26 0.90
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2... 26 0.90
pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (S... 25 1.2
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Del... 25 1.2
pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Fre... 25 1.5
pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1... 24 2.6
pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosom... 24 3.4
pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 3... 24 3.4
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crysta... 23 5.8
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crysta... 23 5.8
pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crysta... 23 5.8
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crysta... 23 5.8
pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Huma... 23 5.8
pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome... 23 5.8
pdb|1A6D|A Chain A, Thermosome From T. Acidophilum >gi|4699... 22 9.9
pdb|1ASS| Apical Domain Of The Chaperonin From Thermoplas... 22 9.9
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 28.5 bits (62), Expect = 0.14
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 5 NILLDSFKIA--LVKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKE 62
N+ L+ K L D Q FS++ S+EQ ++ A S+ I Q ELL+K+KE
Sbjct: 407 NLTLEDLKSISPLFASDVSQVFSVVN--SVEQYTAVGGTAKSSVTAQIEQLRELLKKQKE 464
Query: 63 E 63
+
Sbjct: 465 Q 465
>pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 27.7 bits (60), Expect = 0.24
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 NILLDSFKIA--LVKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKE 62
N+ L+ K L D Q F+ + S+EQ +L A S+ I Q EL++K+KE
Sbjct: 407 NLTLEDLKSISPLFSSDVSQVFNFVN--SVEQYTALGGTAKSSVTTQIEQLRELMKKQKE 464
Query: 63 E 63
+
Sbjct: 465 Q 465
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 25.8 bits (55), Expect = 0.90
Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 12/49 (24%)
Query: 32 LEQIKSL-DLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
L+ KSL D+ A+L + E+ EE +L + +A+KIQ+FLS
Sbjct: 382 LQDYKSLQDIIAILGMDEL-----------SEEDKLTVSRARKIQRFLS 419
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
Length = 479
Score = 25.8 bits (55), Expect = 0.90
Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 12/49 (24%)
Query: 32 LEQIKSL-DLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
L+ KSL D+ A+L + E+ EE +L + +A+KIQ+FLS
Sbjct: 378 LQDYKSLQDIIAILGMDEL-----------SEEDKLTVSRARKIQRFLS 415
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 25.8 bits (55), Expect = 0.90
Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 12/49 (24%)
Query: 32 LEQIKSL-DLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
L+ KSL D+ A+L + E+ EE +L + +A+KIQ+FLS
Sbjct: 382 LQDYKSLQDIIAILGMDEL-----------SEEDKLTVSRARKIQRFLS 419
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 25.8 bits (55), Expect = 0.90
Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 12/49 (24%)
Query: 32 LEQIKSL-DLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
L+ KSL D+ A+L + E+ EE +L + +A+KIQ+FLS
Sbjct: 382 LQDYKSLQDIIAILGMDEL-----------SEEDKLTVSRARKIQRFLS 419
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 482
Score = 25.8 bits (55), Expect = 0.90
Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 12/49 (24%)
Query: 32 LEQIKSL-DLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
L+ KSL D+ A+L + E+ EE +L + +A+KIQ+FLS
Sbjct: 382 LQDYKSLQDIIAILGMDEL-----------SEEDKLTVSRARKIQRFLS 419
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 25.8 bits (55), Expect = 0.90
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 19 DSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEE 63
D Q F+ + S+EQ +L A S+ I Q EL++K+KE+
Sbjct: 425 DVSQVFNFVN--SVEQYTALGGTAKSSVTTQIEQLRELMKKQKEQ 467
>pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 25.8 bits (55), Expect = 0.90
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 19 DSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEE 63
D Q F+ + S+EQ +L A S+ I Q EL++K+KE+
Sbjct: 425 DVSQVFNFVN--SVEQYTALGGTAKSSVTTQIEQLRELMKKQKEQ 467
>pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna
Ligase) Complexed With Seryl-Hydroxamate-Amp
pdb|1SES|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna
Ligase) Complexed With Seryl-Hydroxamate-Amp
pdb|1SET|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna
Ligase) Complexed With
5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
pdb|1SET|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna
Ligase) Complexed With
5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
pdb|1SRY|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11)
pdb|1SRY|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11)
pdb|1SER|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
Trna-Ser 2 (Gga Anticodon)
pdb|1SER|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
Trna-Ser 2 (Gga Anticodon)
Length = 421
Score = 25.4 bits (54), Expect = 1.2
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 18 KDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQMHK-AKKIQK 76
K +Q + R E+ +LDL+ALL+L + ++ L+K +E+Q + ++ AK++ K
Sbjct: 5 KRLRQEPEVFHRAIREKGVALDLEALLALD----REVQELKKRLQEVQTERNQVAKRVPK 60
>pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 25.4 bits (54), Expect = 1.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 19 DSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEE 63
D Q F+ + S+EQ +L A S+ I Q EL++K+KE+
Sbjct: 425 DVSQVFNFVN--SVEQYTALAGTAKSSVTTQIEQLRELMKKQKEQ 467
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 25.0 bits (53), Expect = 1.5
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 12/50 (24%)
Query: 31 SLEQIKSL-DLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
+LE+ K L D+ A+L + E+ +E +L +H+A++IQ FLS
Sbjct: 373 TLERYKELQDIIAILGMDEL-----------SDEDKLVVHRARRIQFFLS 411
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 498
Score = 24.3 bits (51), Expect = 2.6
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 12/50 (24%)
Query: 31 SLEQIKSL-DLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
+L++ K L D+ A+L L E+ EE +L + +A+KI++FLS
Sbjct: 394 TLQRYKELQDIIAILGLDEL-----------SEEDRLTVARARKIERFLS 432
>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 255
Score = 23.9 bits (50), Expect = 3.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 48 EMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
E + S E+ E+ K+E H+ +++QK+LS
Sbjct: 118 EALFASPEIEERPKKEQVRLKHELERLQKYLS 149
>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1J5E|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1IBL|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HR0|B Chain B, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1JGQ|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|E Chain E, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 256
Score = 23.9 bits (50), Expect = 3.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 48 EMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
E + S E+ E+ K+E H+ +++QK+LS
Sbjct: 119 EALFASPEIEERPKKEQVRLKHELERLQKYLS 150
>pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 436
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Query: 19 DSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEK 61
D Q F+ + S+EQ +L A S+ I Q EL++K+K
Sbjct: 396 DVSQVFNFVN--SVEQYTALGGTAKSSVTTQIEQLRELMKKQK 436
>pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 434
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Query: 19 DSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEK 61
D Q F+ + S+EQ +L A S+ I Q EL++K+K
Sbjct: 394 DVSQVFNFVN--SVEQYTALGGTAKSSVTTQIEQLRELMKKQK 434
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 424
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Query: 19 DSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEK 61
D Q F+ + S+EQ +L A S+ I Q EL++K+K
Sbjct: 384 DVSQVFNFVN--SVEQYTALGGTAKSSVTTQIEQLRELMKKQK 424
>pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 418
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Query: 19 DSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEK 61
D Q F+ + S+EQ +L A S+ I Q EL++K+K
Sbjct: 378 DVSQVFNFVN--SVEQYTALGGTAKSSVTTQIEQLRELMKKQK 418
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 150
Score = 23.1 bits (48), Expect = 5.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 39 DLDALLSLKEMIAQSIELLEKEKEELQLQ 67
D+D L ++ Q + LEK + QLQ
Sbjct: 74 DIDDLKRQNALLEQQVRALEKARSSAQLQ 102
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 254
Score = 23.1 bits (48), Expect = 5.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 39 DLDALLSLKEMIAQSIELLEKEKEELQLQMHKAK 72
D D + E I Q + +E+EK+E Q Q K K
Sbjct: 218 DSDIVALSSEEINQYVTQIEQEKQEQQEQDKKKK 251
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome - Mg-Adp-Alf3 Complex
Length = 545
Score = 22.3 bits (46), Expect = 9.9
Identities = 13/47 (27%), Positives = 25/47 (52%)
Query: 33 EQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
E++ S D + + K + S ++K + E ++Q+ KIQ FL+
Sbjct: 221 EKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLN 267
>pdb|1ASS| Apical Domain Of The Chaperonin From Thermoplasma Acidophilum
pdb|1ASX| Apical Domain Of The Chaperonin From Thermoplasma Acidophilum
Length = 159
Score = 22.3 bits (46), Expect = 9.9
Identities = 13/47 (27%), Positives = 25/47 (52%)
Query: 33 EQIKSLDLDALLSLKEMIAQSIELLEKEKEELQLQMHKAKKIQKFLS 79
E++ S D + + K + S ++K + E ++Q+ KIQ FL+
Sbjct: 9 EKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLN 55
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.131 0.316
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,249
Number of Sequences: 13198
Number of extensions: 8084
Number of successful extensions: 36
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 23
length of query: 79
length of database: 2,899,336
effective HSP length: 55
effective length of query: 24
effective length of database: 2,173,446
effective search space: 52162704
effective search space used: 52162704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)