BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645375|ref|NP_207549.1| hypothetical protein
[Helicobacter pylori 26695]
(48 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IYJ|A Chain A, Structure Of A Brca2-Dss1 Complex >gi|2... 30 0.043
pdb|1A3H| Endoglucanase Cel5a From Bacillus Agaradherans ... 28 0.21
pdb|1QI2|A Chain A, Endoglucanase Cel5a From Bacillus Agara... 28 0.21
pdb|1H5V|A Chain A, Thiopentasaccharide Complex Of The Endo... 28 0.21
pdb|1H11|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME ... 28 0.21
pdb|1LF1|A Chain A, Crystal Structure Of Cel5 From Alkaloph... 28 0.21
pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome... 28 0.28
pdb|1SIG| Crystal Structure Of A Sigma70 Subunit Fragment... 27 0.48
pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit ... 26 1.1
pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cof... 25 1.8
pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C... 24 3.1
pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New F... 24 3.1
pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Pe... 24 3.1
pdb|1QSO|A Chain A, Histone Acetyltransferase Hpa2 From Sac... 24 3.1
pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-... 24 3.1
pdb|1QSM|D Chain D, Histone Acetyltransferase Hpa2 From Sac... 24 3.1
pdb|1JKW| Structure Of Cyclin Mcs2 24 4.0
pdb|1EJ6|D Chain D, Reovirus Core >gi|9955261|pdb|1EJ6|E Ch... 24 4.0
pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk ... 24 4.0
pdb|1I3G|H Chain H, Crystal Structure Of An Ampicillin Sing... 23 9.0
pdb|1QKL|A Chain A, Hrpabc14.4, Essential Subunit Of Human ... 23 9.0
pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Amp... 23 9.0
pdb|1JHL|H Chain H, Fv Fragment (Igg1, Kappa) (Light And He... 23 9.0
pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Amp... 23 9.0
>pdb|1IYJ|A Chain A, Structure Of A Brca2-Dss1 Complex
pdb|1IYJ|C Chain C, Structure Of A Brca2-Dss1 Complex
pdb|1MIU|B Chain B, Structure Of A Brca2-Dss1 Complex
pdb|1MJE|B Chain B, Structure Of A Brca2-Dss1-Ssdna Complex
Length = 70
Score = 30.4 bits (67), Expect = 0.043
Identities = 14/36 (38%), Positives = 24/36 (65%), Gaps = 1/36 (2%)
Query: 5 EDELEDFEEEELEGFEEEDEEYGDYKNVYDDDDYED 40
+DE E+F E+ G +EDE+ +++ +DDD+ ED
Sbjct: 16 DDEFEEFPAEDWAGL-DEDEDAHVWEDNWDDDNVED 50
>pdb|1A3H| Endoglucanase Cel5a From Bacillus Agaradherans At 1.6a Resolution
pdb|3A3H| Cellotriose Complex Of The Endoglucanase Cel5a From Bacillus
Agaradherans At 1.6 A Resolution
pdb|2A3H| Cellobiose Complex Of The Endoglucanase Cel5a From Bacillus
Agaradherans At 2.0 A Resolution
Length = 300
Score = 28.1 bits (61), Expect = 0.21
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 11 FEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSD 44
++EE + F+E E YGDY NV + E SD
Sbjct: 108 YKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSD 141
>pdb|1QI2|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
2',4'-Dinitrophenyl 2-Deoxy-2-Fluoro-B-D-Cellotrioside
pdb|1E5J|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
Methyl-4ii-S-Alpha-Cellobiosyl-4ii-Thio
Beta-Cellobioside
pdb|1QHZ|A Chain A, Native Tetragonal Structure Of The Endoglucanase Cel5a
From Bacillus Agaradhaerens
pdb|1QI0|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With Cellobiose
Length = 305
Score = 28.1 bits (61), Expect = 0.21
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 11 FEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSD 44
++EE + F+E E YGDY NV + E SD
Sbjct: 111 YKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSD 144
>pdb|1H5V|A Chain A, Thiopentasaccharide Complex Of The Endoglucanase Cel5a
From Bacillus Agaradharens At 1.1 A Resolution In The
Tetragonal Crystal Form
Length = 304
Score = 28.1 bits (61), Expect = 0.21
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 11 FEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSD 44
++EE + F+E E YGDY NV + E SD
Sbjct: 111 YKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSD 144
>pdb|1H11|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.08 Angstrom Resolution
pdb|1H2J|A Chain A, Endoglucanase Cel5a In Complex With Unhydrolysed And
Covalently Linked 2,4-Dinitrophenyl-2-Deoxy-2-
Fluoro-Cellobioside At 1.15 A Resolution
pdb|7A3H|A Chain A, Native Endoglucanase Cel5a Catalytic Core Domain At 0.95
Angstroms Resolution
pdb|8A3H|A Chain A, Cellobiose-Derived Imidazole Complex Of The Endoglucanase
Cel5a From Bacillus Agaradhaerens At 0.97 A Resolution
pdb|1HF6|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Orthorhombic Crystal Form In Complex With Cellotriose
pdb|4A3H|A Chain A, 2',4' Dinitrophenyl-2-Deoxy-2-Fluro-B-D-Cellobioside
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhaerens At 1.6 A Resolution
pdb|6A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.6 Angstrom Resolution
pdb|5A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellobiosylENZYME INTERMEDIATE COMPLEX
Of The Endoglucanase Cel5a From Bacillus Agaradhearans
At 1.8 Angstroms Resolution
Length = 303
Score = 28.1 bits (61), Expect = 0.21
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 11 FEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSD 44
++EE + F+E E YGDY NV + E SD
Sbjct: 111 YKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSD 144
>pdb|1LF1|A Chain A, Crystal Structure Of Cel5 From Alkalophilic Bacillus Sp
Length = 308
Score = 28.1 bits (61), Expect = 0.21
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 11 FEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSD 44
++EE + F+E E YGDY NV + E SD
Sbjct: 111 YKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSD 144
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 287
Score = 27.7 bits (60), Expect = 0.28
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 3 DYEDELEDFEEEELEGFEEEDEEYGDYKNVYDDDD 37
D E DF ++E+ G ++EDE+ D NV DD
Sbjct: 233 DLLQEAIDFAQKEINGDDDEDED--DSDNVMSSDD 265
>pdb|1SIG| Crystal Structure Of A Sigma70 Subunit Fragment From Escherichia
Coli Rna Polymerase
Length = 339
Score = 26.9 bits (58), Expect = 0.48
Identities = 11/30 (36%), Positives = 19/30 (62%)
Query: 10 DFEEEELEGFEEEDEEYGDYKNVYDDDDYE 39
+ +E+L+ E+EDEE GD + DD+ +
Sbjct: 75 ELSQEDLDDDEDEDEEDGDDDSADDDNSID 104
>pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit Skeletal Muscle
Sarcoplasmic Reticulum At 2.4 A Resolution
Length = 367
Score = 25.8 bits (55), Expect = 1.1
Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 5/36 (13%)
Query: 2 KDYEDELEDFEEEELEGFEEEDEEYGDYKNVYDDDD 37
++ ED LED E E+ +++DE+ D DDDD
Sbjct: 337 EELEDWLEDVLEGEINTEDDDDEDDDD-----DDDD 367
>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
Length = 480
Score = 25.0 bits (53), Expect = 1.8
Identities = 10/21 (47%), Positives = 16/21 (75%), Gaps = 1/21 (4%)
Query: 21 EEDEEYGDYKNVY-DDDDYED 40
EED++Y D + ++ +DDDY D
Sbjct: 55 EEDDDYLDLEKIFSEDDDYID 75
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 24.3 bits (51), Expect = 3.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 3 DYEDELEDFEEEELEGFEEEDEEYGDYKNVYDDDDYE 39
DY+D+ + E E+E E+ ++ G + +Y D +E
Sbjct: 2 DYKDDDDKLEFMEMEKEFEQIDKSGSWAAIYQDIRHE 38
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 24.3 bits (51), Expect = 3.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 6 DELEDFEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSDYE 46
DEL+D EEL EEEDEE + + E+ D E
Sbjct: 337 DELDDM--EELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 375
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 24.3 bits (51), Expect = 3.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 3 DYEDELEDFEEEELEGFEEEDEEYGDYKNVYDDDDYE 39
DY+D+ + E E+E E+ ++ G + +Y D +E
Sbjct: 2 DYKDDDDKLEFMEMEKEFEQIDKSGSWAAIYQDIRHE 38
>pdb|1QSO|A Chain A, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
pdb|1QSO|B Chain B, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
pdb|1QSO|C Chain C, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
pdb|1QSO|D Chain D, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
Length = 149
Score = 24.3 bits (51), Expect = 3.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 13 EEELEGFEEEDEEYGDYKNVYDDDDYEDYN 42
E + EG++ + Y D+ V DD +D+N
Sbjct: 9 ENDKEGWQRLWKSYQDFYEVSFPDDLDDFN 38
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 386
Score = 24.3 bits (51), Expect = 3.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 6 DELEDFEEEELEGFEEEDEEYGDYKNVYDDDDYEDYNSDYE 46
DEL+D EEL EEEDEE + + E+ D E
Sbjct: 338 DELDDM--EELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 376
>pdb|1QSM|D Chain D, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
pdb|1QSM|A Chain A, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
pdb|1QSM|B Chain B, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
pdb|1QSM|C Chain C, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
Length = 152
Score = 24.3 bits (51), Expect = 3.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 13 EEELEGFEEEDEEYGDYKNVYDDDDYEDYN 42
E + EG++ + Y D+ V DD +D+N
Sbjct: 12 ENDKEGWQRLWKSYQDFYEVSFPDDLDDFN 41
>pdb|1JKW| Structure Of Cyclin Mcs2
Length = 323
Score = 23.9 bits (50), Expect = 4.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 33 YDDDDYEDYNSDYEEE 48
Y+DDDY S +EEE
Sbjct: 297 YEDDDYVSKKSKHEEE 312
>pdb|1EJ6|D Chain D, Reovirus Core
pdb|1EJ6|E Chain E, Reovirus Core
Length = 418
Score = 23.9 bits (50), Expect = 4.0
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 6 DELEDFEEEELEGFEEEDEEY 26
D+ + F+ ++LE + ED++Y
Sbjct: 362 DQTQQFKRDKLEAWAREDDQY 382
>pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase
Length = 333
Score = 23.9 bits (50), Expect = 4.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 33 YDDDDYEDYNSDYEEE 48
Y+DDDY S +EEE
Sbjct: 307 YEDDDYVSKKSKHEEE 322
>pdb|1I3G|H Chain H, Crystal Structure Of An Ampicillin Single Chain Fv, Form
1, Free
Length = 121
Score = 22.7 bits (47), Expect = 9.0
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 31 NVYDDDDYEDYNSDYEEE 48
N+Y D Y +YN ++++
Sbjct: 50 NIYPSDSYTNYNQKFKDK 67
>pdb|1QKL|A Chain A, Hrpabc14.4, Essential Subunit Of Human Rna Polymerases
I, Ii And Iii
Length = 127
Score = 22.7 bits (47), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 3 DYEDELEDFEEEELEGFEEEDEE 25
D++D ED ++LE EEE +E
Sbjct: 12 DFDDVEEDEGLDDLENAEEEGQE 34
>pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment From Phage-Displayed Murine Antibody
Libraries
Length = 252
Score = 22.7 bits (47), Expect = 9.0
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 31 NVYDDDDYEDYNSDYEEE 48
N+Y D Y +YN ++++
Sbjct: 181 NIYPSDSYTNYNQKFKDK 198
>pdb|1JHL|H Chain H, Fv Fragment (Igg1, Kappa) (Light And Heavy Variable
Domains Non-Covalently Associated) Of Monoclonal
Anti-Hen Egg Lysozyme Antibody D11.15 Complex With
Pheasant Egg Lysozyme
Length = 116
Score = 22.7 bits (47), Expect = 9.0
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 31 NVYDDDDYEDYNSDYEEE 48
N+Y D Y +YN ++++
Sbjct: 50 NIYPSDSYTNYNQKFKDK 67
>pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8O|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment.
pdb|1H8S|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8O|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment
Length = 252
Score = 22.7 bits (47), Expect = 9.0
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 31 NVYDDDDYEDYNSDYEEE 48
N+Y D Y +YN ++++
Sbjct: 181 NIYPSDSYTNYNQKFKDK 198
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.297 0.134 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,331
Number of Sequences: 13198
Number of extensions: 16131
Number of successful extensions: 52
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 26
length of query: 48
length of database: 2,899,336
effective HSP length: 24
effective length of query: 24
effective length of database: 2,582,584
effective search space: 61982016
effective search space used: 61982016
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 47 (22.7 bits)