BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645376|ref|NP_207550.1| beta-alanine synthetase
homolog [Helicobacter pylori 26695]
(292 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F89|A Chain A, Crystal Structure Of Yeast Hypothetical... 122 6e-29
pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nit... 87 2e-18
pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamo... 84 2e-17
pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino... 83 4e-17
pdb|1RDZ|A Chain A, T-State Structure Of The Arg 243 To Ala... 26 6.2
pdb|1FLC|A Chain A, X-Ray Structure Of The Haemagglutinin-E... 25 8.1
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.... 25 8.1
pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependen... 25 8.1
>pdb|1F89|A Chain A, Crystal Structure Of Yeast Hypothetical Protein, Yl85
pdb|1F89|B Chain B, Crystal Structure Of Yeast Hypothetical Protein, Yl85
Length = 291
Score = 122 bits (305), Expect = 6e-29
Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 39/284 (13%)
Query: 19 IEHTANLLEQALKKHPKTNLVVLQEL--NPYSY-----FCQSENPKFFDLGEYFEEDKAF 71
++ A +E+A+K+ P T LVVL E +PYS + + NPK F
Sbjct: 29 LQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPK------EPSTSVQF 82
Query: 72 FSALAQKFQVVLVASLF---EKRAKGLYHNSAVVFEKDGSIAGVYRKMH-----IPDDPG 123
S LA KF+++LV + + +Y N++++F +DG + +RK+H IP+
Sbjct: 83 LSNLANKFKIILVGGTIPELDPKTDKIY-NTSIIFNEDGKLIDKHRKVHLFDVDIPNGIS 141
Query: 124 FYEKFYFTPGDLGFEPIVTSVGKLGLMVCWDQWYPEAARIMALKGAEILIYPSAIGFLEE 183
F+E +PG+ I T GK G+ +C+D +PE A + A KGA +IYPSA +
Sbjct: 142 FHESETLSPGEKS-TTIDTKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAFNTVTG 200
Query: 184 DSNEEKKRQQNAWETIQRGHAIANGLPLIATNRVGVELDPSGAIKGGITFFGSSFVVGAL 243
+ W + R A+ N + ++ + P+ ++ +G S VV
Sbjct: 201 PLH---------WHLLARSRAVDNQVYVMLCS-------PARNLQSSYHAYGHSIVVDPR 244
Query: 244 GEFLAKASDKEEILYAEIDLERTEEVRRMWPFLRDRRIDFYNDL 287
G+ +A+A + EEI+YAE+D E E R+ P + RR D Y+D+
Sbjct: 245 GKIVAEAGEGEEIIYAELDPEVIESFRQAVPLTKQRRFDVYSDV 288
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 87.4 bits (215), Expect = 2e-18
Identities = 76/282 (26%), Positives = 125/282 (43%), Gaps = 38/282 (13%)
Query: 16 KKTIEHTANLLEQALKKHPKTNLVVLQELNPYSYFCQSENPKFFDLG-----EYFEEDKA 70
+K + N++E+A +K K +V L E + ++E DL EY E+
Sbjct: 29 EKNFQAAKNMIERAGEK--KCEMVFLPECFDFIGLNKNEQ---IDLAMATDCEYMEK--- 80
Query: 71 FFSALAQKFQVVL-VASLFEKRAKGLYH--NSAVVFEKDGSIAGVYRKMH-----IPDDP 122
+ LA+K + L + L K H N+ ++ + DG Y K+H IP
Sbjct: 81 -YRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKV 139
Query: 123 GFYEKFYFTPGDLGFEPIVTSVGKLGLMVCWDQWYPEAARIMALKGAEILIYPSAIGFLE 182
E + G P+ T +G+LGL +C+D +PE + +GA++L +PSA
Sbjct: 140 RLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNT 199
Query: 183 EDSNEEKKRQQNAWETIQRGHAIANGLPLIATNRVGVELDPSGAIKGGITFFGSSFVVGA 242
++ WET+ R AI N ++A + G + +G S VV
Sbjct: 200 GLAH---------WETLLRARAIENQCYVVAAAQTGAHNPKRQS-------YGHSMVVDP 243
Query: 243 LGEFLAKASDKEEILYAEIDLERTEEVRRMWPFLRDRRIDFY 284
G +A+ S++ ++ +AEIDL + +R M P RR D Y
Sbjct: 244 WGAVVAQCSERVDMCFAEIDLSYVDTLREMQPVFSHRRSDLY 285
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 84.0 bits (206), Expect = 2e-17
Identities = 73/280 (26%), Positives = 126/280 (44%), Gaps = 39/280 (13%)
Query: 14 SRKKTIEHTANLLEQALKKHPKTNLVVLQELNPYSYFCQSENPKFFDLGEYFEED----- 68
+R++ + ++L A + N +V EL ++F + +L ++E +
Sbjct: 20 TREQVVGRLLDMLTNAASRG--VNFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPV 77
Query: 69 -KAFFSALAQK---FQVVLVASLFEKRAKGLYHNSAVVFEKDGSIAGVYRKMHIPDDPGF 124
+ F A+ F + + E K + N++++ +K G I G YRK+H+P +
Sbjct: 78 VRPLFETAAELGIGFNLGYAELVVEGGVKRRF-NTSILVDKSGKIVGKYRKIHLPGHKEY 136
Query: 125 --------YEKFYFTPGDLGFEPIVTSVGKLGLMVCWDQWYPEAARIMALKGAEILIYPS 176
EK YF PGDLGF K+G+ +C D+ +PE R+M LKGAEI+
Sbjct: 137 EAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEII---- 192
Query: 177 AIGFLEEDSNEEKKRQQNAWE-----TIQRGHAIANGLPLIATNRVGVELDPSGAIKGGI 231
G+ N + + ++Q G + NG A +VG+E G
Sbjct: 193 CGGYNTPTHNPPVPQHDHLTSFHHLLSMQAG-SYQNGAWSAAAGKVGME--------EGC 243
Query: 232 TFFGSSFVVGALGEFLAKASD-KEEILYAEIDLERTEEVR 270
G S +V GE +A + ++E++ A +DL+R E+R
Sbjct: 244 MLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELR 283
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 82.8 bits (203), Expect = 4e-17
Identities = 75/295 (25%), Positives = 134/295 (45%), Gaps = 40/295 (13%)
Query: 14 SRKKTIEHTANLLEQALKKHPKTNLVVLQELNPYSYFCQSENPKFFDLGEYFEED----- 68
+R++ + ++L +A + N +V EL ++F + +L ++E +
Sbjct: 19 TREQVVVRLLDMLTKAASRG--ANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPV 76
Query: 69 -KAFFSALAQK---FQVVLVASLFEKRAKGLYHNSAVVFEKDGSIAGVYRKMHIPDDPGF 124
+ F A+ F + + E K + N++++ +K G I G YRK+H+P +
Sbjct: 77 VRPLFEKAAELGIGFNLGYAELVVEGGVKRRF-NTSILVDKSGKIVGKYRKIHLPGHKEY 135
Query: 125 --------YEKFYFTPGDLGFEPIVTSVGKLGLMVCWDQWYPEAARIMALKGAEILIYPS 176
EK YF PGDLGF K+G+ +C D+ +PEA R+M L+GAEI+
Sbjct: 136 EAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEII---- 191
Query: 177 AIGFLEEDSNEEKKRQQNAWE-----TIQRGHAIANGLPLIATNRVGVELDPSGAIKGGI 231
G+ N + + ++Q G + NG A +VG+E
Sbjct: 192 CGGYNTPTHNPPVPQHDHLTSFHHLLSMQAG-SYQNGAWSAAAGKVGME--------ENC 242
Query: 232 TFFGSSFVVGALGEFLAKASD-KEEILYAEIDLERTEEVR-RMWPFLRDRRIDFY 284
G S +V GE +A + ++E++ A +DL+R E+R ++ F + R+ Y
Sbjct: 243 MLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHY 297
>pdb|1RDZ|A Chain A, T-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDZ|B Chain B, T-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDY|A Chain A, T-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDY|B Chain B, T-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDX|A Chain A, R-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDX|B Chain B, R-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
Length = 337
Score = 25.8 bits (55), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 4/44 (9%)
Query: 10 AYCGSR----KKTIEHTANLLEQALKKHPKTNLVVLQELNPYSY 49
AY GS +T+ + + A KK PK L +L E NP +Y
Sbjct: 243 AYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAY 286
>pdb|1FLC|A Chain A, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|E Chain E, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|C Chain C, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
Length = 432
Score = 25.4 bits (54), Expect = 8.1
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 35 KTNLVVLQELNPYSYFCQSENPKFFDLGEYFEEDKAFFSALAQKFQVVLVASLFEKRAKG 94
K + QE+ P C EN FF L F + +A + + ++ KR
Sbjct: 180 KNPALYTQEVKPSENKCGKENLAFFTLPTQFGTYECKLHLVASCYFIYDSKEVYNKRGCD 239
Query: 95 LYHNSAVVFEKDGSIAG 111
Y V+++ G + G
Sbjct: 240 NYFQ--VIYDSFGKVVG 254
>pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
Length = 1733
Score = 25.4 bits (54), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 3 CASVLQHAYCGSRKKTIEHTANLLEQAL 30
C ++Q CG RK T+ T L+Q L
Sbjct: 520 CMGIVQDTLCGIRKLTLRDTFIELDQVL 547
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 25.4 bits (54), Expect = 8.1
Identities = 18/79 (22%), Positives = 34/79 (42%), Gaps = 15/79 (18%)
Query: 159 EAARIMALKGAEILIYPSAIGFLEEDSNEEKKRQ----QNAWETIQRGHAIANGLPLIAT 214
+A + + G +++Y + + L + +Q AWET+QRG
Sbjct: 187 DAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRG-----------W 235
Query: 215 NRVGVELDPSGAIKGGITF 233
N VG+ + P +++G F
Sbjct: 236 NVVGLAVRPQHSMRGHTAF 254
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,726,030
Number of Sequences: 13198
Number of extensions: 73227
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 8
length of query: 292
length of database: 2,899,336
effective HSP length: 87
effective length of query: 205
effective length of database: 1,751,110
effective search space: 358977550
effective search space used: 358977550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)