BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645377|ref|NP_207551.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(437 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p >gi|1697... 27 3.5
pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma ... 27 4.5
pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of... 27 4.5
pdb|1CHR|A Chain A, Chloromuconate Cycloisomerase (E.C.5.5.... 26 7.7
>pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p
pdb|1KA0|A Chain A, The Papase Hal2p Complexed With A Sodium Ion And The
Reaction Product Amp
pdb|1K9Y|A Chain A, The Papase Hal2p Complexed With Magnesium Ions And
Reaction Products: Amp And Inorganic Phosphate
pdb|1KA1|A Chain A, The Papase Hal2p Complexed With Calcium And Magnesium Ions
And Reaction Substrate: Pap
pdb|1K9Z|A Chain A, The Papase Hal2p Complexed With Zinc Ions
Length = 357
Score = 27.3 bits (59), Expect = 3.5
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 133 LHLMNRLELDRRAVACALTFGLQAPYLVLPVGFGLIFQTTILEQLKAN 180
L++ L LD +A C L GL YL LP+ L +Q I + N
Sbjct: 254 LNISKSLHLDSQAKYCLLALGLADVYLRLPI--KLSYQEKIWDHAAGN 299
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 26.9 bits (58), Expect = 4.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 333 LMLVVGLFITMGIGTSFGTIPIIAVFYVPLCAKLG 367
L+L VG TMG+ T G I +P+CA+ G
Sbjct: 353 LLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPG 387
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
Length = 410
Score = 26.9 bits (58), Expect = 4.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 333 LMLVVGLFITMGIGTSFGTIPIIAVFYVPLCAKLG 367
L+L VG TMG+ T G I +P+CA+ G
Sbjct: 353 LLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPG 387
>pdb|1CHR|A Chain A, Chloromuconate Cycloisomerase (E.C.5.5.1.7)
pdb|1CHR|B Chain B, Chloromuconate Cycloisomerase (E.C.5.5.1.7)
pdb|2CHR| Chloromuconate Cycloisomerase (Cmci) (E.C.5.5.1.7)
Length = 370
Score = 26.2 bits (56), Expect = 7.7
Identities = 14/47 (29%), Positives = 21/47 (43%)
Query: 355 IAVFYVPLCAKLGFSVESTILLIGIAAALGDAGSPASDSTMGPTCGL 401
+ VF + LC G S I + A+ + G DST+G + L
Sbjct: 263 VDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVAL 309
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.329 0.143 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,143,617
Number of Sequences: 13198
Number of extensions: 78170
Number of successful extensions: 340
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 4
length of query: 437
length of database: 2,899,336
effective HSP length: 91
effective length of query: 346
effective length of database: 1,698,318
effective search space: 587618028
effective search space used: 587618028
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)