BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644707|ref|NP_206877.1| peptide chain release
factor RF-1 (prfA) [Helicobacter pylori 26695]
(352 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2... 192 4e-50
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 29 0.71
pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant 29 0.71
pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa 29 0.71
pdb|1I89|A Chain A, Chalcone Synthase (G256l) >gi|17943401|... 29 0.71
pdb|1I88|A Chain A, Chalcone Synthase (G256v) >gi|17943403|... 29 0.71
pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexe... 29 0.71
pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant 29 0.71
pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant) >gi|72... 29 0.71
pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coe... 29 0.71
pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexe... 29 0.71
pdb|1I8B|A Chain A, Chalcone Synthase (G256f) >gi|17943399|... 29 0.71
pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexe... 29 0.71
pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexe... 29 0.71
pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovin... 28 1.6
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-... 27 2.7
pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain 27 4.6
pdb|1K47|A Chain A, Crystal Structure Of The Streptococcus ... 26 6.0
pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form ... 26 7.8
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia
Coli
Length = 365
Score = 192 bits (489), Expect = 4e-50
Identities = 120/334 (35%), Positives = 189/334 (55%), Gaps = 14/334 (4%)
Query: 13 KRYDELTALLSSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLENIKENKELL---E 69
+R +E+ A L +V ++ ++ L KE+SS+E + + LE++ EL +
Sbjct: 32 ERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQXKQGLEDVSGLLELAVEAD 91
Query: 70 DKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGD 129
D+E A EL LE + + LE ++ D + YL+++AG+GG EA +
Sbjct: 92 DEETFNEAVAELDALEEKLAQLE--FRRXF--SGEYDSADCYLDIQAGSGGTEAQDWASX 147
Query: 130 LFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPET 189
L + Y R+A+ + +K EI+ SE V G K + I G Y L+ E G HR+ R
Sbjct: 148 LERXYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPF 207
Query: 190 ESQGRIHTSAITVAIMPEVDD-VEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLP 248
+S GR HTS + + PEVDD +++ INP+DL+I+V+RA G GGQ VN T+SAVRITH+P
Sbjct: 208 DSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIP 267
Query: 249 TNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLAN--AKDRKEQVGSGDRSERIR 306
T I Q+++SQHKNKD+A K KA+LYE + +++ +D K +G G +IR
Sbjct: 268 TGIVTQCQNDRSQHKNKDQAXKQXKAKLYEVEXQKKNAEKQAXEDNKSDIGWG---SQIR 324
Query: 307 TYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVI 340
+Y +R+ + R + + + + L G+LD+ I
Sbjct: 325 SYVLDDSRIKDLRTGVETRNTQAV-LDGSLDQFI 357
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 29.3 bits (64), Expect = 0.71
Identities = 29/127 (22%), Positives = 56/127 (43%), Gaps = 17/127 (13%)
Query: 1 MSILAEKLSSILKRYDELTALLSSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLEN 60
M + KL + K+ +T + ++S + ++ L+ E E+++I S+ + L+N
Sbjct: 1 MKRMEGKLFMVSKKLQVVTKTV----LLSTVFSISLLNNEVIKAEQLNINSQSKYTNLQN 56
Query: 61 IKENKELLEDKELSELAKE-------ELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLE 113
+K ++ + KE E AKE E K+ +K + + + ND K Y E
Sbjct: 57 LKITDKVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFL------DNKNDIKTNYKE 110
Query: 114 LRAGTGG 120
+ G
Sbjct: 111 ITFSMAG 117
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 43 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 102
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 103 PRLGKEAAVKAI 114
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 43 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 102
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 103 PRLGKEAAVKAI 114
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 43 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 102
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 103 PRLGKEAAVKAI 114
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 43 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 102
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 103 PRLGKEAAVKAI 114
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 43 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 102
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 103 PRLGKEAAVKAI 114
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 43 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 102
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 103 PRLGKEAAVKAI 114
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 42 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 101
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 102 PRLGKEAAVKAI 113
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 42 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 101
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 102 PRLGKEAAVKAI 113
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 41 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 100
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 101 PRLGKEAAVKAI 112
>pdb|1I8B|A Chain A, Chalcone Synthase (G256f)
pdb|1I8B|B Chain B, Chalcone Synthase (G256f)
Length = 389
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 43 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 102
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 103 PRLGKEAAVKAI 114
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 43 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 102
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 103 PRLGKEAAVKAI 114
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/72 (23%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 28 VSDIKKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKELSELAKEELKILEI 86
+++ + TEL ++ + + S+ + Y+ + E I KEN + E S A++++ ++E+
Sbjct: 43 ITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEV 102
Query: 87 QKSDLETAIKQL 98
+ E A+K +
Sbjct: 103 PRLGKEAAVKAI 114
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 32 KKLTELSKEQSSIEEISIASKEYLSVLENI-KENKELLEDKE------LSELAKEELKIL 84
K + +L S+ S ++ +Y+++L+N+ K + ++D E S L K +L I
Sbjct: 42 KSIEDLRNTVDSVSRTSSSTFQYITLLKNMWKGRQNQVQDNENVVNEYSSHLEKHQLYID 101
Query: 85 EIQKSDLETAIKQL 98
E K+++ T ++ L
Sbjct: 102 ETVKNNIPTKLRVL 115
>pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 203 AIMPEVDDVEVSINPSDL------KIEVFRAGGHGGQCVNTTDSA 241
+I PE+ D +IN + +E F+ GHGG+ +N A
Sbjct: 97 SITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQA 141
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 26.6 bits (57), Expect = 4.6
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 210 DVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDK-A 268
D E +I P D KI+VF+ S +R+ L + + D + + D
Sbjct: 251 DKEFTIKPLDKKIDVFK----------FNSSKLRVNKLILQLCIGNHDLFMRRRKADSLE 300
Query: 269 LKILKARLYE----KQIEEQQLA 287
++ +KA+ E KQ+E Q+LA
Sbjct: 301 VQQMKAQAREEKARKQMERQRLA 323
>pdb|1K47|A Chain A, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|B Chain B, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|C Chain C, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|D Chain D, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|E Chain E, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|F Chain F, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
Length = 337
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 8/57 (14%)
Query: 21 LLSSAEVVSDIKKLTELSKEQSSIEEISIASK--------EYLSVLENIKENKELLE 69
L SS E V + + E K + IE++ +ASK Y +L +KE + L+
Sbjct: 231 LTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQ 287
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 25.8 bits (55), Expect = 7.8
Identities = 22/67 (32%), Positives = 30/67 (43%), Gaps = 19/67 (28%)
Query: 12 LKRYDELTALLSSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLENIKENKELLEDK 71
LK YD+ A D+KK E++ E +I+ E L V + IK K DK
Sbjct: 320 LKEYDQALA---------DLKKAQEIAPEDKAIQA------ELLKVKQKIKAQK----DK 360
Query: 72 ELSELAK 78
E + AK
Sbjct: 361 EKAAYAK 367
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.311 0.130 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,875,858
Number of Sequences: 13198
Number of extensions: 76898
Number of successful extensions: 206
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 20
length of query: 352
length of database: 2,899,336
effective HSP length: 89
effective length of query: 263
effective length of database: 1,724,714
effective search space: 453599782
effective search space used: 453599782
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)