BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645379|ref|NP_207553.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(462 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 40 4e-04
pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hex... 32 0.15
pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hex... 32 0.15
pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals ... 29 0.98
pdb|1LC0|A Chain A, Structure Of Biliverdin Reductase And T... 29 0.98
pdb|1GCU|A Chain A, Crystal Structure Of Rat Biliverdin Red... 29 0.98
pdb|1MU2|B Chain B, Crystal Structure Of Hiv-2 Reverse Tran... 29 1.3
pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Tran... 29 1.3
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose... 28 1.7
pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Ra... 28 1.7
pdb|2DPG| Complex Of Inactive Mutant (H240->n) Of Glucose... 28 1.7
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of G... 28 1.7
pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Ph... 28 1.7
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 28 2.2
pdb|1M4V|A Chain A, Crystal Structure Of Set3, A Superantig... 28 2.2
pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From ... 27 3.7
pdb|1EC6|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homol... 27 3.7
pdb|1KD9|F Chain F, X-Ray Structure Of The Coiled Coil Gcn4... 27 3.7
pdb|1JEY|B Chain B, Crystal Structure Of The Ku Heterodimer... 27 3.7
pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprote... 27 3.7
pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZI... 27 3.7
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 27 4.9
pdb|1KDD|A Chain A, X-Ray Structure Of The Coiled Coil Gcn4... 27 4.9
pdb|1DT4|A Chain A, Crystal Structure Of Nova-1 Kh3 K-Homol... 27 4.9
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agal... 27 6.3
pdb|2FMR| Kh1 From The Fragile X Protein Fmr1, Nmr, 18 St... 27 6.3
pdb|1B43|A Chain A, Fen-1 From P. Furiosus >gi|6980605|pdb|... 26 8.3
pdb|1KD8|C Chain C, X-Ray Structure Of The Coiled Coil Gcn4... 26 8.3
pdb|1J4W|A Chain A, Complex Of The Kh3 And Kh4 Domains Of F... 26 8.3
pdb|1DTJ|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homol... 26 8.3
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-... 26 8.3
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 40.4 bits (93), Expect = 4e-04
Identities = 64/294 (21%), Positives = 130/294 (43%), Gaps = 37/294 (12%)
Query: 21 KKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQEKENFKKQRAVCKESQAKAL 80
K EA LK LE +H + E++ L +EK + E E L E E + + A K+ + L
Sbjct: 875 KAEAELKELEQKHTQLC--EEKNLLQEKLQAETE---LYAEAEEMRVRLAAKKQELEEIL 929
Query: 81 DAMLNYMAYTKDEIKSMILEQLEEELEAQKSALIRRY---EKEAKEEGKKKSYAILAEAT 137
M E + E+ ++L+A+K + ++ E++ +EE + L + T
Sbjct: 930 HEM---------EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 138 ARFAGNYAAENLTTRIALPCSDYIGRVIGKDGKNIEAFKKVSGVDIEFSEDSSELCLSSF 197
A +++ L D ++ K+ K +E ++VS + +E+ + +
Sbjct: 981 ADGKIKKMEDDI-----LIMEDQNNKLT-KERKLLE--ERVSDLTTNLAEEEEK----AK 1028
Query: 198 NLYRREVASETLKILIEDGRIQPNRIEEVYHRVARNLE------KELLSEGESVVLEL-- 249
NL + + E++ +E + + + ++ R LE E ++E ++ + EL
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088
Query: 250 ELGAMEDELKILIGKMRYRSSFGQNALQHSKEVALLAGLIAEQLGGDKKLARRA 303
+L E+EL+ + ++ +S NAL+ +E+ + E L +K +A
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 32.0 bits (71), Expect = 0.15
Identities = 20/72 (27%), Positives = 36/72 (49%), Gaps = 3/72 (4%)
Query: 386 ALEEIALEFDGVEKAYAMESGRELRVIVKSNQVRDNQVPIIARKIAKKIEESAQYVGEVG 445
+LE+I EFD AY++ G++L + S V +I K+AK E + G +
Sbjct: 269 SLEDIRTEFDRAIDAYSLNPGKQLFEKMVSGMYLGELVRLILVKMAK---EGLLFEGRIT 325
Query: 446 VQVVRESRFKTT 457
+++ +F T+
Sbjct: 326 PELLTRGKFNTS 337
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 32.0 bits (71), Expect = 0.15
Identities = 20/72 (27%), Positives = 36/72 (49%), Gaps = 3/72 (4%)
Query: 386 ALEEIALEFDGVEKAYAMESGRELRVIVKSNQVRDNQVPIIARKIAKKIEESAQYVGEVG 445
+LE+I EFD AY++ G++L + S V +I K+AK E + G +
Sbjct: 269 SLEDIRTEFDRAIDAYSLNPGKQLFEKMVSGMYLGELVRLILVKMAK---EGLLFEGRIT 325
Query: 446 VQVVRESRFKTT 457
+++ +F T+
Sbjct: 326 PELLTRGKFNTS 337
>pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|F Chain F, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|G Chain G, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|H Chain H, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20
Length = 100
Score = 29.3 bits (64), Expect = 0.98
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 36 FVRDEKRYLEKEKKELEKERQILEQEKENFKKQ---RAV---CKESQAKALDAMLNYMAY 89
F R+E L + +ELE ER LE+EK + Q RA+ +S+ K L LN +
Sbjct: 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSV 68
Query: 90 TKDEIKSMILEQLEEELEAQKSALIRRYEK 119
+ ++ QL+ E E + L+R E+
Sbjct: 69 ARQRLRE-DHSQLQAECERLR-GLLRAMER 96
>pdb|1LC0|A Chain A, Structure Of Biliverdin Reductase And The Enzyme-Nadh
Complex
pdb|1LC3|A Chain A, Crystal Structure Of A Biliverdin Reductase
Enzyme-Cofactor Complex
Length = 294
Score = 29.3 bits (64), Expect = 0.98
Identities = 39/186 (20%), Positives = 80/186 (42%), Gaps = 7/186 (3%)
Query: 12 IWQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKE--KKELEKERQILEQEKENFKKQR 69
+W+L + H +H+E +EF + L KE K L LE+E+ F
Sbjct: 108 LWELAAQ-KGRVLHEEHVELLMEEFEFLRREVLGKELLKGSLRFTASPLEEERFGFPAFS 166
Query: 70 AVCKESQAKALDAMLNYMAYTKDEIKSMILEQLEEELEAQKSALIRRYEKEAKEEGKKKS 129
+ + + +L L+ ++ T +E K ++ +LE Q L+ E+ K G K++
Sbjct: 167 GISRLTWLVSLFGELSLISATLEERKEDQYMKMTVQLETQNKGLLSWIEE--KGPGLKRN 224
Query: 130 YAILAEATARFAGNYAAENLTTRIALPCSD-YIGRVIGK-DGKNIEAFKKVSGVDIEFSE 187
+ + T+ + + I L D ++ +++ + +++ A KK + +
Sbjct: 225 RYVNFQFTSGSLEEVPSVGVNKNIFLKDQDIFVQKLLDQVSAEDLAAEKKRIMHCLGLAS 284
Query: 188 DSSELC 193
D +LC
Sbjct: 285 DIQKLC 290
>pdb|1GCU|A Chain A, Crystal Structure Of Rat Biliverdin Reductase At 1.4 A
Length = 295
Score = 29.3 bits (64), Expect = 0.98
Identities = 39/186 (20%), Positives = 80/186 (42%), Gaps = 7/186 (3%)
Query: 12 IWQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKE--KKELEKERQILEQEKENFKKQR 69
+W+L + H +H+E +EF + L KE K L LE+E+ F
Sbjct: 109 LWELAAQ-KGRVLHEEHVELLMEEFEFLRREVLGKELLKGSLRFTASPLEEERFGFPAFS 167
Query: 70 AVCKESQAKALDAMLNYMAYTKDEIKSMILEQLEEELEAQKSALIRRYEKEAKEEGKKKS 129
+ + + +L L+ ++ T +E K ++ +LE Q L+ E+ K G K++
Sbjct: 168 GISRLTWLVSLFGELSLISATLEERKEDQYMKMTVQLETQNKGLLSWIEE--KGPGLKRN 225
Query: 130 YAILAEATARFAGNYAAENLTTRIALPCSD-YIGRVIGK-DGKNIEAFKKVSGVDIEFSE 187
+ + T+ + + I L D ++ +++ + +++ A KK + +
Sbjct: 226 RYVNFQFTSGSLEEVPSVGVNKNIFLKDQDIFVQKLLDQVSAEDLAAEKKRIMHCLGLAS 285
Query: 188 DSSELC 193
D +LC
Sbjct: 286 DIQKLC 291
>pdb|1MU2|B Chain B, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 426
Score = 28.9 bits (63), Expect = 1.3
Identities = 22/83 (26%), Positives = 40/83 (47%), Gaps = 2/83 (2%)
Query: 13 WQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQEKE-NFKKQRAV 71
W Q + K HL L K + +E ++ E + ELE+ R IL QE+E ++ ++
Sbjct: 261 WAAQLYPGIKTKHLCRL-ISGKMTLTEEVQWTELAEAELEENRIILSQEQEGHYYQEEKE 319
Query: 72 CKESQAKALDAMLNYMAYTKDEI 94
+ + K D Y + +++I
Sbjct: 320 LEATVQKDQDNQWTYKIHQEEKI 342
>pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 555
Score = 28.9 bits (63), Expect = 1.3
Identities = 22/83 (26%), Positives = 40/83 (47%), Gaps = 2/83 (2%)
Query: 13 WQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQEKE-NFKKQRAV 71
W Q + K HL L K + +E ++ E + ELE+ R IL QE+E ++ ++
Sbjct: 266 WAAQLYPGIKTKHLCRL-ISGKMTLTEEVQWTELAEAELEENRIILSQEQEGHYYQEEKE 324
Query: 72 CKESQAKALDAMLNYMAYTKDEI 94
+ + K D Y + +++I
Sbjct: 325 LEATVQKDQDNQWTYKIHQEEKI 347
>pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 88 AYTKDEIKSMILEQLEE--ELEAQKSALIRRYEKEAKEEGKKKSYAILAEATARFAGNY 144
A DE K ++ + +++ + +AQ A I + A + SYA+L EA A +
Sbjct: 48 ALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKF 106
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 28.5 bits (62), Expect = 1.7
Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 44 LEKEKKELEKERQILEQEKENFKKQRAVCKESQAKALDAMLN--YMAYTKDEIKSMILEQ 101
++KE K+LEK + E+ E KK +A+ +E+ + + + + +T+ + +++
Sbjct: 4 VKKEIKDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRA 63
Query: 102 LEEEL 106
E ++
Sbjct: 64 EENKV 68
>pdb|2DPG| Complex Of Inactive Mutant (H240->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With Nadp+
Length = 485
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 88 AYTKDEIKSMILEQLEE--ELEAQKSALIRRYEKEAKEEGKKKSYAILAEATARFAGNY 144
A DE K ++ + +++ + +AQ A I + A + SYA+L EA A +
Sbjct: 48 ALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKF 106
>pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
Length = 485
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 88 AYTKDEIKSMILEQLEE--ELEAQKSALIRRYEKEAKEEGKKKSYAILAEATARFAGNY 144
A DE K ++ + +++ + +AQ A I + A + SYA+L EA A +
Sbjct: 48 ALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKF 106
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 88 AYTKDEIKSMILEQLEE--ELEAQKSALIRRYEKEAKEEGKKKSYAILAEATARFAGNY 144
A DE K ++ + +++ + +AQ A I + A + SYA+L EA A +
Sbjct: 48 ALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKF 106
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 28.1 bits (61), Expect = 2.2
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 21 KKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQ 56
++E H K +E E + ++ EKEK+++E+E++
Sbjct: 310 REEKHQKQMERAMLENEKKKREMAEKEKEKIEREKE 345
Score = 27.3 bits (59), Expect = 3.7
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 32 QHKEFVRDEKRYLEKEKKELE---KERQILEQEKENFKKQR 69
Q K R+EK + E+ LE K+R++ E+EKE ++++
Sbjct: 304 QMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREK 344
>pdb|1M4V|A Chain A, Crystal Structure Of Set3, A Superantigen-Like Protein
From Staphylococcus Aureus
pdb|1M4V|B Chain B, Crystal Structure Of Set3, A Superantigen-Like Protein
From Staphylococcus Aureus
Length = 204
Score = 28.1 bits (61), Expect = 2.2
Identities = 14/52 (26%), Positives = 30/52 (56%), Gaps = 11/52 (21%)
Query: 194 LSSFNLYRREVASETLKILIEDG---------RIQPNRIEEVYHRVARNLEK 236
+ +F+LY++ +K++++DG ++QP+R+ +V RN+EK
Sbjct: 149 IQNFDLYKKFPKDSKIKVIMKDGGYYTFELNKKLQPHRMSDVID--GRNIEK 198
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 27.3 bits (59), Expect = 3.7
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 88 AYTKDEIKSMILEQLEE--ELEAQKSALIRRYEKEAKEEGKKKSYAILAEATARFAGNY 144
A DE K ++ + +++ + +AQ A I + A + SYA+L EA A +
Sbjct: 48 ALNDDEFKQLVRDCIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKF 106
>pdb|1EC6|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
pdb|1EC6|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
Length = 87
Score = 27.3 bits (59), Expect = 3.7
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 153 IALPCSDYIGRVIGKDGKNIEAFKKVSGVDIEFSE 187
IA+P + +G ++GK GK + +++++G I+ S+
Sbjct: 7 IAVP-ENLVGAILGKGGKTLVEYQELTGARIQISK 40
>pdb|1KD9|F Chain F, X-Ray Structure Of The Coiled Coil Gcn4 Acid Base
Heterodimer Acid-D12la16l Base-D12la16l
pdb|1KD9|C Chain C, X-Ray Structure Of The Coiled Coil Gcn4 Acid Base
Heterodimer Acid-D12la16l Base-D12la16l
pdb|1KD9|A Chain A, X-Ray Structure Of The Coiled Coil Gcn4 Acid Base
Heterodimer Acid-D12la16l Base-D12la16l
Length = 36
Score = 27.3 bits (59), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 40 EKRYLEKEKKELEKERQILEQEKENFKKQRAVCK 73
E + LE E +ELE E LE E +K+ A C+
Sbjct: 2 EVKQLEAEVEELESELWHLENEVARLEKENAECE 35
>pdb|1JEY|B Chain B, Crystal Structure Of The Ku Heterodimer Bound To Dna
pdb|1JEQ|B Chain B, Crystal Structure Of The Ku Heterodimer
Length = 565
Score = 27.3 bits (59), Expect = 3.7
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 51 LEKERQILEQEKENFKKQRAVCKESQAKALDAMLNYMAYTKDEIKSMILEQL 102
+E RQ + +N KK E+Q A+DA+++ M+ K + K+ LE L
Sbjct: 427 MEDLRQYMFSSLKNSKKYAPT--EAQLNAVDALIDSMSLAKKDEKTDTLEDL 476
>pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|B Chain B, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|C Chain C, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|D Chain D, Crystal Structure Of Human Apolipoprotein A-I
Length = 201
Score = 27.3 bits (59), Expect = 3.7
Identities = 22/104 (21%), Positives = 49/104 (46%), Gaps = 2/104 (1%)
Query: 21 KKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEK-ERQILEQEKENFKKQRAVCKESQAKA 79
K + +L + + +E + ++ +E + EL++ RQ L + +E ++
Sbjct: 54 KVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAH 113
Query: 80 LDAMLNYMAYTKDEIKSMILEQLEEELEAQKSALIRRYEKEAKE 123
+DA+ ++A DE++ + +L E L+ A + Y +A E
Sbjct: 114 VDALRTHLAPYSDELRQRLAARL-EALKENGGARLAEYHAKATE 156
>pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 27.3 bits (59), Expect = 3.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 21 KKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQEKENFKKQRAVCKE 74
KK K ++++ R E+ L E KELEK+ + L++ ++ K+ K+
Sbjct: 5 KKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 26.9 bits (58), Expect = 4.9
Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 14 QLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQEKENFKKQ----- 68
QL + + + KE + ++ +EK +EL K +E+E FK +
Sbjct: 53 QLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAV 112
Query: 69 RAVCKESQAKALDAMLNYMAYTKDEIKSMILEQLEEELEAQKSALIRRYEKEAKE 123
+ +ESQ A + N M T ++ I + ++ ++ + + +E K+
Sbjct: 113 QTTVQESQKLAKEVASN-MEETNKKLAPKIKQAYDDFVKHAEEVQKKLHEAATKQ 166
>pdb|1KDD|A Chain A, X-Ray Structure Of The Coiled Coil Gcn4 Acid Base
Heterodimer Acid-D12la16i Base-D12la16l
pdb|1KDD|F Chain F, X-Ray Structure Of The Coiled Coil Gcn4 Acid Base
Heterodimer Acid-D12la16i Base-D12la16l
pdb|1KDD|C Chain C, X-Ray Structure Of The Coiled Coil Gcn4 Acid Base
Heterodimer Acid-D12la16i Base-D12la16l
Length = 36
Score = 26.9 bits (58), Expect = 4.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 40 EKRYLEKEKKELEKERQILEQEKENFKKQRAVCK 73
E + LE E +ELE E LE E +K+ A C+
Sbjct: 2 EVKQLEAEVEELESEIWHLENEVARLEKENAECE 35
>pdb|1DT4|A Chain A, Crystal Structure Of Nova-1 Kh3 K-Homology Rna-Binding
Domain
Length = 73
Score = 26.9 bits (58), Expect = 4.9
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 153 IALPCSDYIGRVIGKDGKNIEAFKKVSGVDIEFSE 187
IA+P + +G ++GK GK + +++++G I+ S+
Sbjct: 7 IAVP-ENLVGAILGKGGKTLVEYQELTGCRIQISK 40
>pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution
Length = 814
Score = 26.6 bits (57), Expect = 6.3
Identities = 26/86 (30%), Positives = 37/86 (42%), Gaps = 16/86 (18%)
Query: 268 RSSFGQNALQHSKEVALLAGLIAEQLGGDKKLARRAGILHD--------------IGKAL 313
R+SF + L +SKEV LL +Q+ DK A I HD G L
Sbjct: 731 RTSFDK--LANSKEVELLENSSKQQVIYDKNSQTWAVIKHDNQESLINNQFKMNKAGLYL 788
Query: 314 TQELGRDHVNLGVEVCKRHKEDPVVI 339
Q++G D+ N+ + K D + I
Sbjct: 789 VQKVGNDYQNVYYQPQTMTKTDQLAI 814
>pdb|2FMR| Kh1 From The Fragile X Protein Fmr1, Nmr, 18 Structures
Length = 65
Score = 26.6 bits (57), Expect = 6.3
Identities = 14/32 (43%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 159 DYIGRVIGKDGKNIEAFKKVSGVD-IEFSEDS 189
D +G IG G NI+ +KV GV I+ ED+
Sbjct: 13 DLMGLAIGTHGANIQQARKVPGVTAIDLDEDT 44
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 26.2 bits (56), Expect = 8.3
Identities = 20/93 (21%), Positives = 44/93 (46%), Gaps = 12/93 (12%)
Query: 45 EKEKKELEKERQILEQEKENFKKQRAVCKESQAKALDAMLNYMAYTKDEIKSMILEQLEE 104
E +KKELEK R+ E+ +E +++ + +A+ A + M++E ++
Sbjct: 85 EFKKKELEKRREAREEAEEKWREALEKGEIEEARK-------YAQRATRVNEMLIEDAKK 137
Query: 105 ELEAQKSALIRRYEKEAKEEGKKKSYAILAEAT 137
LE ++ +A EG+ ++ + A+ +
Sbjct: 138 LLELMGIPIV-----QAPSEGEAQAAYMAAKGS 165
>pdb|1KD8|C Chain C, X-Ray Structure Of The Coiled Coil Gcn4 Acid Base
Heterodimer Acid-D12ia16v Base-D12la16l
pdb|1KD8|A Chain A, X-Ray Structure Of The Coiled Coil Gcn4 Acid Base
Heterodimer Acid-D12ia16v Base-D12la16l
pdb|1KD8|F Chain F, X-Ray Structure Of The Coiled Coil Gcn4 Acid Base
Heterodimer Acid-D12ia16v Base-D12la16l
Length = 36
Score = 26.2 bits (56), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 40 EKRYLEKEKKELEKERQILEQEKENFKKQRAVCK 73
E + LE E +E+E E LE E +K+ A C+
Sbjct: 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAECE 35
>pdb|1J4W|A Chain A, Complex Of The Kh3 And Kh4 Domains Of Fbp With A
Single_stranded 29mer Dna Oligonucleotide From The Fuse
Element Of The C-Myc Oncogene
Length = 174
Score = 26.2 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 161 IGRVIGKDGKNIEAFKKVSGVDIEFSED 188
+G VIG++G+ I+ + +GV I+F D
Sbjct: 14 VGIVIGRNGEMIKKIQNDAGVRIQFKPD 41
>pdb|1DTJ|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|C Chain C, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|D Chain D, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
Length = 76
Score = 26.2 bits (56), Expect = 8.3
Identities = 10/35 (28%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 153 IALPCSDYIGRVIGKDGKNIEAFKKVSGVDIEFSE 187
+A+P + +G ++GK GK + +++++G I+ S+
Sbjct: 7 MAVP-ENLVGAILGKGGKTLVEYQELTGARIQISK 40
>pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 26.2 bits (56), Expect = 8.3
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 18 HFDKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQEKE 63
HF+ +EA + +E + + D K ++ + K E+E ++ + KE
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.131 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,406,704
Number of Sequences: 13198
Number of extensions: 94865
Number of successful extensions: 239
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 37
length of query: 462
length of database: 2,899,336
effective HSP length: 91
effective length of query: 371
effective length of database: 1,698,318
effective search space: 630075978
effective search space used: 630075978
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)