BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645380|ref|NP_207554.1| hypothetical protein
[Helicobacter pylori 26695]
(200 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1M7V|A Chain A, Structure Of A Nitric Oxide Synthase He... 27 2.1
pdb|1M7Z|A Chain A, Structure Of Nitric Oxide Synthase Heme... 27 2.1
pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino... 26 2.7
pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae >gi|... 26 3.6
pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In... 26 3.6
pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamo... 25 4.7
pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porci... 25 6.1
pdb|1G5B|B Chain B, Bacteriophage Lambda SerTHR PROTEIN PHO... 25 6.1
>pdb|1M7V|A Chain A, Structure Of A Nitric Oxide Synthase Heme Protein From
Bacillus Subtilis With Tetrahydrofolate And Arginine
Bound
Length = 363
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 25 ELDIRPLIFRLRQKNKCVW--LPKSI 48
+ D+ PLIFR+R + VW LP+S+
Sbjct: 166 DFDLLPLIFRMRGDEQPVWYELPRSL 191
>pdb|1M7Z|A Chain A, Structure Of Nitric Oxide Synthase Heme Protein From
Bacillus Subtilis With N-Hydroxy-Arginine And
Tetrahydrofolate Bound
Length = 361
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 25 ELDIRPLIFRLRQKNKCVW--LPKSI 48
+ D+ PLIFR+R + VW LP+S+
Sbjct: 164 DFDLLPLIFRMRGDEQPVWYELPRSL 189
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 26.2 bits (56), Expect = 2.7
Identities = 23/86 (26%), Positives = 37/86 (42%), Gaps = 2/86 (2%)
Query: 44 LPKSIKKGAHFSKESFTIAPFRLPLRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRR 103
L K+ +GA+F F R + DE L +Y+ E+ VV L +
Sbjct: 31 LTKAASRGANFIV--FPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELG 88
Query: 104 VGFGLGMYDRSLPQLLKRRLKRPLIV 129
+GF LG + + +KRR ++V
Sbjct: 89 IGFNLGYAELVVEGGVKRRFNTSILV 114
>pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae
pdb|1G8G|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8G|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8H|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
pdb|1G8H|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
Length = 511
Score = 25.8 bits (55), Expect = 3.6
Identities = 25/90 (27%), Positives = 38/90 (41%), Gaps = 5/90 (5%)
Query: 9 KLKDYQNILLYSPLGHE-LDIRPLIFRLRQKNKCVW--LPKSIKKGAHFSKESFTIAPFR 65
+++ YQ I+ P G L + PL R+ + VW + + +HF P +
Sbjct: 238 RVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGK 297
Query: 66 LP--LRRLGWFDEPSLSRYYKQELDCIVVP 93
+ G +D L YK ELD VVP
Sbjct: 298 NSKGVDFYGPYDAQELVESYKHELDIEVVP 327
>pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Thiosulfate
pdb|1JEE|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JEE|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JED|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JED|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With Adp
Length = 510
Score = 25.8 bits (55), Expect = 3.6
Identities = 25/90 (27%), Positives = 38/90 (41%), Gaps = 5/90 (5%)
Query: 9 KLKDYQNILLYSPLGHE-LDIRPLIFRLRQKNKCVW--LPKSIKKGAHFSKESFTIAPFR 65
+++ YQ I+ P G L + PL R+ + VW + + +HF P +
Sbjct: 237 RVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGK 296
Query: 66 LP--LRRLGWFDEPSLSRYYKQELDCIVVP 93
+ G +D L YK ELD VVP
Sbjct: 297 NSKGVDFYGPYDAQELVESYKHELDIEVVP 326
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 25.4 bits (54), Expect = 4.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 75 DEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLKRRLKRPLIV 129
DE L +Y+ E+ VV L + +GF LG + + +KRR ++V
Sbjct: 61 DEAELDSFYETEMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILV 115
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum
Transferrin
Length = 696
Score = 25.0 bits (53), Expect = 6.1
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 128 IVFVSRELAIANGVLTNAYDIEADL-YMNARIVVKNNKRKHYEQRVNLHFIRSLGSVFDY 186
+ FV ++ N N D DL M+ ++ +N R+ + N H R+
Sbjct: 539 VAFVKDQVVQQNTDGKNKDDWAKDLKQMDFELLCQNGAREPVDNAENCHLARAPNHAVVA 598
Query: 187 RSSHVLCDEKDLLR 200
R V C ++LL+
Sbjct: 599 RDDKVTCVAEELLK 612
>pdb|1G5B|B Chain B, Bacteriophage Lambda SerTHR PROTEIN PHOSPHATASE
pdb|1G5B|C Chain C, Bacteriophage Lambda SerTHR PROTEIN PHOSPHATASE
pdb|1G5B|A Chain A, Bacteriophage Lambda SerTHR PROTEIN PHOSPHATASE
Length = 221
Score = 25.0 bits (53), Expect = 6.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 12 DYQNILLYSPLGHELDIRPLIFRLRQKNK 40
DY +L L H+ D PLI L K+K
Sbjct: 105 DYDKEILAKALAHKADELPLIIELVSKDK 133
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.328 0.144 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,132,831
Number of Sequences: 13198
Number of extensions: 45403
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 8
length of query: 200
length of database: 2,899,336
effective HSP length: 84
effective length of query: 116
effective length of database: 1,790,704
effective search space: 207721664
effective search space used: 207721664
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)