BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645381|ref|NP_207555.1| hypothetical protein
[Helicobacter pylori 26695]
(185 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KQR|A Chain A, Crystal Structure Of The Rhesus Rotavir... 27 1.4
pdb|1KRI|A Chain A, Nmr Solution Structures Of The Rhesus R... 27 1.4
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 26 2.4
pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein E... 25 4.1
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric ... 25 5.4
pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRAN... 25 5.4
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex ... 25 5.4
>pdb|1KQR|A Chain A, Crystal Structure Of The Rhesus Rotavirus Vp4 Sialic Acid
Binding Domain In Complex With
2-O-Methyl-Alpha-D-N-Acetyl Neuraminic Acid
Length = 179
Score = 26.9 bits (58), Expect = 1.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 25 KNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITGDLDSLNISPDSNT 73
K +Q SQ P Q +PK Y M N + YT G+ ++ S T
Sbjct: 100 KTTQNGSYSQYG-PLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTT 147
>pdb|1KRI|A Chain A, Nmr Solution Structures Of The Rhesus Rotavirus Vp4 Sialic
Acid Binding Domain Without Ligand
Length = 186
Score = 26.9 bits (58), Expect = 1.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 25 KNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITGDLDSLNISPDSNT 73
K +Q SQ P Q +PK Y M N + YT G+ ++ S T
Sbjct: 100 KTTQNGSYSQYG-PLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTT 147
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 26.2 bits (56), Expect = 2.4
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 4/128 (3%)
Query: 19 LGFSACKNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITGDLDSLNISPDSNTPTLLV 78
L F A KNS S+N + ++ Y D E + DL S P NT +L
Sbjct: 453 LFFIADKNSFSDDLSKNERIEYNTQSNYIENDFPINELILDTDLISKIELPSENTESLTD 512
Query: 79 LSALDNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIKDFSAHFQADLMILNPKDT 138
+ +D + + P+ +KK F D + L I+D S D +L
Sbjct: 513 FN-VDVPVYEKQPA---IKKIFTDENTIFQYLYSQTFPLDIRDISLTSSFDDALLFSNKV 568
Query: 139 ALFDHLKY 146
F + Y
Sbjct: 569 YSFFSMDY 576
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 25.4 bits (54), Expect = 4.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 51 LNNQEYTITGDLDSLNISPDSNTPT 75
LN ++ T+TGD+ + + D N+PT
Sbjct: 210 LNGKDSTVTGDVKAPSWPDDRNSPT 234
>pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
Length = 340
Score = 25.0 bits (53), Expect = 5.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 32 DSQNNTPQQDSPKTYTAMDLNNQEYTITG---DLDSLNISPDSNTPTLLVLSALDNSLKD 88
D+Q T D+ ++ Q T TG D+ SL+++PD+ L V A D S K
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKL 210
Query: 89 YAPSFNILKKTF 100
+ + ++TF
Sbjct: 211 WDVREGMCRQTF 222
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 25.0 bits (53), Expect = 5.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 32 DSQNNTPQQDSPKTYTAMDLNNQEYTITG---DLDSLNISPDSNTPTLLVLSALDNSLKD 88
D+Q T D+ ++ Q T TG D+ SL+++PD+ L V A D S K
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKL 210
Query: 89 YAPSFNILKKTF 100
+ + ++TF
Sbjct: 211 WDVREGMCRQTF 222
>pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 340
Score = 25.0 bits (53), Expect = 5.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 32 DSQNNTPQQDSPKTYTAMDLNNQEYTITG---DLDSLNISPDSNTPTLLVLSALDNSLKD 88
D+Q T D+ ++ Q T TG D+ SL+++PD+ L V A D S K
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKL 210
Query: 89 YAPSFNILKKTF 100
+ + ++TF
Sbjct: 211 WDVREGMCRQTF 222
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,011,804
Number of Sequences: 13198
Number of extensions: 38490
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 7
length of query: 185
length of database: 2,899,336
effective HSP length: 83
effective length of query: 102
effective length of database: 1,803,902
effective search space: 183998004
effective search space used: 183998004
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)