BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645382|ref|NP_207556.1| cell division protein
(ftsY) [Helicobacter pylori 26695]
(293 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 205 6e-54
pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh... 126 3e-30
pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Rec... 126 3e-30
pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Rec... 126 3e-30
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain ... 126 3e-30
pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Rec... 126 3e-30
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 107 2e-24
pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved G... 105 6e-24
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 32 0.11
pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From... 30 0.43
pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution ... 29 0.56
pdb|1AK2| Adenylate Kinase Isoenzyme-2 >gi|1633467|pdb|2A... 29 0.73
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic ... 28 0.96
pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp 28 0.96
pdb|1KFD| Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7... 28 1.6
pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic ... 28 1.6
pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment) (E.C... 28 1.6
pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Su... 28 1.6
pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna... 28 1.6
pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidoc... 27 2.8
pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts Fr... 27 3.6
pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprP... 27 3.6
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 26 4.7
pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_... 26 4.7
pdb|1BH2| A326s Mutant Of An Inhibitory Alpha Subunit 26 4.7
pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 B... 26 4.7
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 Wi... 26 4.7
pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) F... 26 4.7
pdb|1GIL| G I Alpha1 (Guanine Nucleotide-Binding Protein ... 26 4.7
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 26 6.2
pdb|1JEQ|A Chain A, Crystal Structure Of The Ku Heterodimer... 26 6.2
pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mu... 26 6.2
pdb|1QHL|A Chain A, Crystal Structure Of The N-Terminal Dom... 25 8.1
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 25 8.1
pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcu... 25 8.1
pdb|1HMJ|A Chain A, Solution Structure Of Rna Polymerase Su... 25 8.1
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 205 bits (521), Expect = 6e-54
Identities = 116/264 (43%), Positives = 167/264 (62%), Gaps = 6/264 (2%)
Query: 28 EELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVA-----LLRFVRGDSYYDKTRLKTI 82
EELEE L+ D+ + ++ +L + + KQL A LL+ G+ +
Sbjct: 29 EELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNV 88
Query: 83 TTK-PLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLN 141
K P V L+VGVNG GKTTTI KLA+ +Q K +L AGDTFRAAAV+QLQ+WG++ N
Sbjct: 89 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 148
Query: 142 IQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVL 201
I VI+ G+D +S+ ++ I++A A+NID + DTAGRL N+++L EL KI R K+
Sbjct: 149 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 208
Query: 202 KDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLPI 261
+AP L +D + G + ++QAK+FHE + L G+ +TKLDGT+KGG I SV + +PI
Sbjct: 209 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPI 268
Query: 262 LYLGMGEKEDDLIAFDEERFIEDL 285
Y+G+GE+ +DL F + FIE L
Sbjct: 269 RYIGVGERIEDLRPFKADDFIEAL 292
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 126 bits (317), Expect = 3e-30
Identities = 85/284 (29%), Positives = 143/284 (49%), Gaps = 16/284 (5%)
Query: 6 KKIVNKIKGEEAKEKKRQSVPKEELEEILIGFDIQYDLI---------ESLLKHLGDLIT 56
++ + +++G ++ E+ L+ D+ ++ E+L K + + +T
Sbjct: 10 QEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLT 69
Query: 57 PKQLEVALLRFVRGDSYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKK 116
P ++ +A + ++ + RL + + L L VG+ G+GKTTT AKLA + ++
Sbjct: 70 PAEVILATVYEALKEALGGEARLPVLKDRNLWFL-VGLQGSGKTTTAAKLALYYKGKGRR 128
Query: 117 ALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDT 176
LL A DT R AA +QL+L GEK+ + V+ +G P S+ E A + D + +DT
Sbjct: 129 PLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDT 188
Query: 177 AGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV 236
AGRL L EL+++ P L+LD G L+ A+ F E + + G+
Sbjct: 189 AGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEALSVARAFDEKVGVTGL 242
Query: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEER 280
++TKLDG ++GGA LS + PI + G+ EK + L F ER
Sbjct: 243 VLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPER 286
>pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 293
Score = 126 bits (317), Expect = 3e-30
Identities = 85/284 (29%), Positives = 143/284 (49%), Gaps = 16/284 (5%)
Query: 6 KKIVNKIKGEEAKEKKRQSVPKEELEEILIGFDIQYDLI---------ESLLKHLGDLIT 56
++ + +++G ++ E+ L+ D+ ++ E+L K + + +T
Sbjct: 9 QEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLT 68
Query: 57 PKQLEVALLRFVRGDSYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKK 116
P ++ +A + ++ + RL + + L L VG+ G+GKTTT AKLA + ++
Sbjct: 69 PAEVILATVYEALKEALGGEARLPVLKDRNLWFL-VGLQGSGKTTTAAKLALYYKGKGRR 127
Query: 117 ALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDT 176
LL A DT R AA +QL+L GEK+ + V+ +G P S+ E A + D + +DT
Sbjct: 128 PLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDT 187
Query: 177 AGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV 236
AGRL L EL+++ P L+LD G L+ A+ F E + + G+
Sbjct: 188 AGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEALSVARAFDEKVGVTGL 241
Query: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEER 280
++TKLDG ++GGA LS + PI + G+ EK + L F ER
Sbjct: 242 VLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPER 285
>pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 294
Score = 126 bits (317), Expect = 3e-30
Identities = 85/284 (29%), Positives = 143/284 (49%), Gaps = 16/284 (5%)
Query: 6 KKIVNKIKGEEAKEKKRQSVPKEELEEILIGFDIQYDLI---------ESLLKHLGDLIT 56
++ + +++G ++ E+ L+ D+ ++ E+L K + + +T
Sbjct: 9 QEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLT 68
Query: 57 PKQLEVALLRFVRGDSYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKK 116
P ++ +A + ++ + RL + + L L VG+ G+GKTTT AKLA + ++
Sbjct: 69 PAEVILATVYEALKEALGGEARLPVLKDRNLWFL-VGLQGSGKTTTAAKLALYYKGKGRR 127
Query: 117 ALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDT 176
LL A DT R AA +QL+L GEK+ + V+ +G P S+ E A + D + +DT
Sbjct: 128 PLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDT 187
Query: 177 AGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV 236
AGRL L EL+++ P L+LD G L+ A+ F E + + G+
Sbjct: 188 AGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEALSVARAFDEKVGVTGL 241
Query: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEER 280
++TKLDG ++GGA LS + PI + G+ EK + L F ER
Sbjct: 242 VLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPER 285
>pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
Length = 296
Score = 126 bits (317), Expect = 3e-30
Identities = 85/284 (29%), Positives = 143/284 (49%), Gaps = 16/284 (5%)
Query: 6 KKIVNKIKGEEAKEKKRQSVPKEELEEILIGFDIQYDLI---------ESLLKHLGDLIT 56
++ + +++G ++ E+ L+ D+ ++ E+L K + + +T
Sbjct: 10 QEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLT 69
Query: 57 PKQLEVALLRFVRGDSYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKK 116
P ++ +A + ++ + RL + + L L VG+ G+GKTTT AKLA + ++
Sbjct: 70 PAEVILATVYEALKEALGGEARLPVLKDRNLWFL-VGLQGSGKTTTAAKLALYYKGKGRR 128
Query: 117 ALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDT 176
LL A DT R AA +QL+L GEK+ + V+ +G P S+ E A + D + +DT
Sbjct: 129 PLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDT 188
Query: 177 AGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV 236
AGRL L EL+++ P L+LD G L+ A+ F E + + G+
Sbjct: 189 AGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEALSVARAFDEKVGVTGL 242
Query: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEER 280
++TKLDG ++GGA LS + PI + G+ EK + L F ER
Sbjct: 243 VLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPER 286
>pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 126 bits (317), Expect = 3e-30
Identities = 85/284 (29%), Positives = 143/284 (49%), Gaps = 16/284 (5%)
Query: 6 KKIVNKIKGEEAKEKKRQSVPKEELEEILIGFDIQYDLI---------ESLLKHLGDLIT 56
++ + +++G ++ E+ L+ D+ ++ E+L K + + +T
Sbjct: 10 QEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLT 69
Query: 57 PKQLEVALLRFVRGDSYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKK 116
P ++ +A + ++ + RL + + L L VG+ G+GKTTT AKLA + ++
Sbjct: 70 PAEVILATVYEALKEALGGEARLPVLKDRNLWFL-VGLQGSGKTTTAAKLALYYKGKGRR 128
Query: 117 ALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDT 176
LL A DT R AA +QL+L GEK+ + V+ +G P S+ E A + D + +DT
Sbjct: 129 PLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDT 188
Query: 177 AGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV 236
AGRL L EL+++ P L+LD G L+ A+ F E + + G+
Sbjct: 189 AGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEALSVARAFDEKVGVTGL 242
Query: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEER 280
++TKLDG ++GGA LS + PI + G+ EK + L F ER
Sbjct: 243 VLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPER 286
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 107 bits (267), Expect = 2e-24
Identities = 78/270 (28%), Positives = 130/270 (47%), Gaps = 18/270 (6%)
Query: 28 EELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLR---FVR------GDSYYDKTR 78
+EL++ LI D+ L+ SL + + + ++ + R F++ + +
Sbjct: 30 KELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKE 89
Query: 79 LKTITTK-PLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWG 137
K I K P V ++VGV G GKTTT KLA K+ K L D +R AA++QLQ G
Sbjct: 90 PKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLG 149
Query: 138 EKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGR--LHNQTNLKNELSKIAR 195
+++ + V D +A +E +++ ++ + +DTAGR + L E+ I
Sbjct: 150 QQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYE 209
Query: 196 TCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLY 255
P L++D + G A F++ + +I+TK+DGT+KGG LS +
Sbjct: 210 AIK------PDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVA 263
Query: 256 ELKLPILYLGMGEKEDDLIAFDEERFIEDL 285
I ++G GEK D+L F+ RF+ L
Sbjct: 264 ATGATIKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 105 bits (262), Expect = 6e-24
Identities = 77/270 (28%), Positives = 129/270 (47%), Gaps = 18/270 (6%)
Query: 28 EELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLR---FVR------GDSYYDKTR 78
+EL++ LI D+ L+ SL + + + ++ + R F++ + +
Sbjct: 30 KELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKE 89
Query: 79 LKTITTK-PLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWG 137
K I K P V ++VGV G GK TT KLA K+ K L D +R AA++QLQ G
Sbjct: 90 PKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLG 149
Query: 138 EKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGR--LHNQTNLKNELSKIAR 195
+++ + V D +A +E +++ ++ + +DTAGR + L E+ I
Sbjct: 150 QQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYE 209
Query: 196 TCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLY 255
P L++D + G A F++ + +I+TK+DGT+KGG LS +
Sbjct: 210 AIK------PDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVA 263
Query: 256 ELKLPILYLGMGEKEDDLIAFDEERFIEDL 285
I ++G GEK D+L F+ RF+ L
Sbjct: 264 ATGATIKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 31.6 bits (70), Expect = 0.11
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 91 IVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGD 123
++G NGAGKTTT++ +A L Q K + D
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD 69
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 29.6 bits (65), Expect = 0.43
Identities = 29/110 (26%), Positives = 44/110 (39%), Gaps = 13/110 (11%)
Query: 72 SYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVK 131
SY D+ + IT K + V V K L + K + GD F A +K
Sbjct: 161 SYADEEGARVITWKNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLK 220
Query: 132 QLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLH 181
+ EKL ++ I +EGS+P I + D ++ GR+H
Sbjct: 221 KRS---EKLGVKFILGREGSEPK----------IQRMGDRFAVEVKGRIH 257
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 29.3 bits (64), Expect = 0.56
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 26/144 (18%)
Query: 90 LIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAG-----DTFRAAAVKQLQLWG----EKL 140
+I+G +G GKT+ + + Q KA +GA T V +Q+W E+
Sbjct: 12 IILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF 71
Query: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNI----DEV-------------FIDTAGRLHNQ 183
++ G+D L Y+ ++ +NI DE F+ ++ +
Sbjct: 72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131
Query: 184 TNLKNELSKIARTCSKVLKDAPFY 207
+ K K A+ +K L D P +
Sbjct: 132 ESKKIVSEKSAQELAKSLGDIPLF 155
>pdb|1AK2| Adenylate Kinase Isoenzyme-2
pdb|2AK2| Adenylate Kinase Isoenzyme-2
Length = 233
Score = 28.9 bits (63), Expect = 0.73
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 90 LIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKE 149
+++G GAGK T KLAK H L GD RA +L G+KL + + K
Sbjct: 20 VLLGPPGAGKGTQAPKLAKNFCVCH----LATGDMLRAMVASGSEL-GKKLKATMDAGKL 74
Query: 150 GSDPS--SLAYNTIESAIAKN 168
SD L +E+ KN
Sbjct: 75 VSDEMVLELIEKNLETPPCKN 95
>pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)- Triphosphate (Rp), Mg, And Mn
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
Length = 402
Score = 28.5 bits (62), Expect = 0.96
Identities = 19/88 (21%), Positives = 40/88 (44%), Gaps = 14/88 (15%)
Query: 114 HKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVF 173
H+ LLGAG++ ++ VKQ+++ L++ + EG + A + + A + ++
Sbjct: 41 HRLLLLGAGESGKSTIVKQMRI----LHVNGFNGGEGGEEDPNAKSNSDGEKATKVQDI- 95
Query: 174 IDTAGRLHNQTNLKNELSKIARTCSKVL 201
+ NLK + I S ++
Sbjct: 96 ---------KNNLKEAIETIVAAMSNLV 114
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 28.5 bits (62), Expect = 0.96
Identities = 29/102 (28%), Positives = 47/102 (45%), Gaps = 16/102 (15%)
Query: 78 RLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWG 137
+LK+ + + L++G++ AGKTT + +LA + H G +K +Q G
Sbjct: 8 KLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN-------IKSVQSQG 59
Query: 138 EKLNIQVISAKEGSDPSSLAY--NT------IESAIAKNIDE 171
KLN+ I + P +Y NT I+SA K +E
Sbjct: 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 101
>pdb|1KFD| Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7) Complexed With
Dctp
pdb|1DPI| DNA Polymerase I (Klenow Fragment) (E.C.2.7.7.7) - dCMP Complex
Length = 605
Score = 27.7 bits (60), Expect = 1.6
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 105 KLAKLSLKQHKKALLGAGDTFRAAAVKQLQ-LWGEKLNIQVISAKEGSDPSSLAYNTIES 163
+LA+L K H+ A G+ F ++ KQLQ + EK I+ + G PS+ E
Sbjct: 239 RLAELEKKAHEIA----GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEEL 294
Query: 164 AIAKNIDEVFIDTAG 178
A+ + +V ++ G
Sbjct: 295 ALDYPLPKVILEYRG 309
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
Length = 394
Score = 27.7 bits (60), Expect = 1.6
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 114 HKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVF 173
H+ LLGAG++ ++ VKQ+++ L++ + + G + A + + A + ++
Sbjct: 41 HRLLLLGAGESGKSTIVKQMRI----LHVNGFNGEGGEEDPQAARSNSDGEKATKVQDI- 95
Query: 174 IDTAGRLHNQTNLKNELSKIARTCSKVL 201
+ NLK + I S ++
Sbjct: 96 ---------KNNLKEAIETIVAAMSNLV 114
>pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7) Mutant
With Asp 355 Replaced By Ala (D355a) Complexed With Dna
Length = 605
Score = 27.7 bits (60), Expect = 1.6
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 105 KLAKLSLKQHKKALLGAGDTFRAAAVKQLQ-LWGEKLNIQVISAKEGSDPSSLAYNTIES 163
+LA+L K H+ A G+ F ++ KQLQ + EK I+ + G PS+ E
Sbjct: 239 RLAELEKKAHEIA----GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEEL 294
Query: 164 AIAKNIDEVFIDTAG 178
A+ + +V ++ G
Sbjct: 295 ALDYPLPKVILEYRG 309
>pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
Manganese
pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
Only
pdb|1KFS|A Chain A, All-Oxygen Dna Complexed To The 3'-5' Exonuclease Of Dna
Polymerase I From E. Coli
pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Short Dna Fragment Carrying 2'-0-
Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
pdb|1KRP|A Chain A, Rp Isomer Phosphorothioate Dna Complexed To The 3'-5'
Exonuclease Of Dna Polymerase I From E. Coli
pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
And Europium (Iii) Ion
pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
pdb|1KSP|A Chain A, Sp Isomer Phosphorothioate Dna Complexed To The 3'-5'
Exonuclease Of Dna Polymerase I From E. Coli
pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
Manganese
pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna Tetramer Carrying
2'-O-(3-Aminopropyl)- Rna Modification
5'-D(Tt)-Ap(U)-D(T)-3'
Length = 605
Score = 27.7 bits (60), Expect = 1.6
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 105 KLAKLSLKQHKKALLGAGDTFRAAAVKQLQ-LWGEKLNIQVISAKEGSDPSSLAYNTIES 163
+LA+L K H+ A G+ F ++ KQLQ + EK I+ + G PS+ E
Sbjct: 239 RLAELEKKAHEIA----GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEEL 294
Query: 164 AIAKNIDEVFIDTAG 178
A+ + +V ++ G
Sbjct: 295 ALDYPLPKVILEYRG 309
>pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna
Length = 605
Score = 27.7 bits (60), Expect = 1.6
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 105 KLAKLSLKQHKKALLGAGDTFRAAAVKQLQ-LWGEKLNIQVISAKEGSDPSSLAYNTIES 163
+LA+L K H+ A G+ F ++ KQLQ + EK I+ + G PS+ E
Sbjct: 239 RLAELEKKAHEIA----GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEEL 294
Query: 164 AIAKNIDEVFIDTAG 178
A+ + +V ++ G
Sbjct: 295 ALDYPLPKVILEYRG 309
>pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|B Chain B, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|C Chain C, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|D Chain D, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|E Chain E, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|F Chain F, Adenylate Kinase From Sulfolobus Acidocaldarius
Length = 194
Score = 26.9 bits (58), Expect = 2.8
Identities = 13/45 (28%), Positives = 25/45 (54%), Gaps = 1/45 (2%)
Query: 88 VHLIVGVNGAGKTTTIAKLAKLSLKQH-KKALLGAGDTFRAAAVK 131
+ ++ G+ G GK+T +AK+ ++ Q ++ GD A A+K
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALK 47
>pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|D Chain D, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 282
Score = 26.6 bits (57), Expect = 3.6
Identities = 21/57 (36%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Query: 197 CSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSV 253
C K L +A L ++ + S + AK +A DGVI TK+DG G IL V
Sbjct: 22 CKKALTEANGDIELAIENMRKSGAIKAAKKAGN-VAADGVIKTKIDGNY--GIILEV 75
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
Thermotoga Maritima
Length = 225
Score = 26.6 bits (57), Expect = 3.6
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 21 KRQSVPKEELEEILIGFD--IQYDLIESLLKHLGDLITPKQLEVALLRFVRGDSY 73
K + V KEEL+E L FD + D++ S +K+L + K + ++ VRG Y
Sbjct: 167 KNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKV-DKGFKKKIIHTVRGIGY 220
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 26.2 bits (56), Expect = 4.7
Identities = 18/49 (36%), Positives = 27/49 (54%), Gaps = 3/49 (6%)
Query: 87 LVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQL 135
++HL VG NGAGK+T +A+ A K ++ AG A + +L L
Sbjct: 28 ILHL-VGPNGAGKSTLLARXA--GXTSGKGSIQFAGQPLEAWSATKLAL 73
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT| Structure Of Gtp-Binding Protein
Length = 353
Score = 26.2 bits (56), Expect = 4.7
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 112 KQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAY-NTIESAIA 166
++ K LLGAG++ ++ VKQ+++ ++ S +E ++ Y NTI+S IA
Sbjct: 31 REVKLLLLGAGESGKSTIVKQMKI----IHEAGYSEEECKQYKAVVYSNTIQSIIA 82
>pdb|1BH2| A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 26.2 bits (56), Expect = 4.7
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 112 KQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAY-NTIESAIA 166
++ K LLGAG++ ++ VKQ+++ ++ S +E ++ Y NTI+S IA
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKI----IHEAGYSEEECKQYKAVVYSNTIQSIIA 52
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 26.2 bits (56), Expect = 4.7
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 112 KQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAY-NTIESAIA 166
++ K LLGAG++ ++ VKQ+++ ++ S +E ++ Y NTI+S IA
Sbjct: 3 REVKLLLLGAGESGKSTIVKQMKI----IHEAGYSEEECKQYKAVVYSNTIQSIIA 54
>pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1BOF| Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD| Gtp-Ase Mol_id: 1; Molecule: Gi Alpha 1; Chain: Null; Synonym:
Gia1, Guanine Nucleotide-Binding Protein G(I), Alpha-1
Subunit; Heterogen: Gdp; Other_details: Inactive Form
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1GFI| Guanine Nucleotide-Binding Protein G(I), Alpha-1 Subunit
(G(I)-Alpha-1) (Active Form) Complexed With Gdp-Alf4
pdb|1GIA| Gi Alpha 1 (Active Form With Bound Gtp-Gamma-S)
Length = 353
Score = 26.2 bits (56), Expect = 4.7
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 112 KQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAY-NTIESAIA 166
++ K LLGAG++ ++ VKQ+++ ++ S +E ++ Y NTI+S IA
Sbjct: 31 REVKLLLLGAGESGKSTIVKQMKI----IHEAGYSEEECKQYKAVVYSNTIQSIIA 82
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 26.2 bits (56), Expect = 4.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 83 TTKPLVHLIVGVNGAGKTTTIAKL 106
+ K L LI+G++GAGKTT + +L
Sbjct: 15 SNKELRILILGLDGAGKTTILYRL 38
>pdb|1GIL| G I Alpha1 (Guanine Nucleotide-Binding Protein G(I), Alpha-1
Subunit) Mutant With Gln 204 Replaced By Leu (Q204l)
Complexed With Gtp-Gamma-S And Magnesium
Length = 353
Score = 26.2 bits (56), Expect = 4.7
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 112 KQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAY-NTIESAIA 166
++ K LLGAG++ ++ VKQ+++ ++ S +E ++ Y NTI+S IA
Sbjct: 31 REVKLLLLGAGESGKSTIVKQMKI----IHEAGYSEEECKQYKAVVYSNTIQSIIA 82
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 25.8 bits (55), Expect = 6.2
Identities = 29/101 (28%), Positives = 48/101 (46%), Gaps = 17/101 (16%)
Query: 19 EKKRQSVPKEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLR-FVRGDSY---- 73
EK R+ + EEL + + F + + KH G PK++E L F++ +
Sbjct: 318 EKARERLAYEELFVLQLAFQ---KIRKEREKHGG---IPKKIEGKLAEEFIKSLPFKLTN 371
Query: 74 -----YDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKL 109
+ + R I+ KP+ L+ G G+GK T +A+LA L
Sbjct: 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGK-TVVAQLAIL 411
>pdb|1JEQ|A Chain A, Crystal Structure Of The Ku Heterodimer
pdb|1JEY|A Chain A, Crystal Structure Of The Ku Heterodimer Bound To Dna
Length = 609
Score = 25.8 bits (55), Expect = 6.2
Identities = 27/113 (23%), Positives = 47/113 (40%), Gaps = 22/113 (19%)
Query: 190 LSKIARTCSKVLKDAPF---YKFLIL----------DGTQGSSGLTQAKIFHETLALDGV 236
LS++ C+ + D F +K ++L D + S T+A +T G+
Sbjct: 143 LSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDT----GI 198
Query: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAV 289
+ + GG +S+ Y + I E ED + F+E +EDL+ V
Sbjct: 199 FLDLMHLKKPGGFDISLFYRDIISI-----AEDEDLRVHFEESSKLEDLLRKV 246
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 25.8 bits (55), Expect = 6.2
Identities = 15/54 (27%), Positives = 25/54 (45%)
Query: 67 FVRGDSYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLG 120
F G+ Y+ K + P+ +I GV+ + IA LS+KQ + + G
Sbjct: 282 FENGEFYFIKMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRG 335
>pdb|1QHL|A Chain A, Crystal Structure Of The N-Terminal Domain Of Mukb At 2.2a
Resolution
Length = 227
Score = 25.4 bits (54), Expect = 8.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 80 KTITTKPLVHLIVGVNGAGKTTTIA 104
+T LV + G NGAGK+TT+A
Sbjct: 21 RTFDLDELVTTLSGGNGAGKSTTMA 45
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 25.4 bits (54), Expect = 8.1
Identities = 17/72 (23%), Positives = 34/72 (46%), Gaps = 2/72 (2%)
Query: 90 LIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKE 149
+++G +G GKTTT+ +A L++ + + GD A K + + + +I ++
Sbjct: 33 ILLGPSGCGKTTTLRMIA--GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 150 GSDPSSLAYNTI 161
P Y+ I
Sbjct: 91 ALYPHMTVYDNI 102
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 25.4 bits (54), Expect = 8.1
Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 14/167 (8%)
Query: 87 LVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVIS 146
++ ++ G G GKTT A L+ + +K L GD A L + + + +
Sbjct: 4 IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVL 63
Query: 147 AKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPF 206
A E N ++ D V++ G + + LK + K+ K LKD
Sbjct: 64 AGEA--------NVEDAIYMTQFDNVYV-LPGAVDWEHVLKADPRKLPEVI-KSLKDK-- 111
Query: 207 YKFLILDGTQG--SSGLTQAKIFHETLALDGVIMTKLDGTSKGGAIL 251
+ F+++D G ++ E L + ++ L T K G +L
Sbjct: 112 FDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVL 158
>pdb|1HMJ|A Chain A, Solution Structure Of Rna Polymerase Subunit H
Length = 78
Score = 25.4 bits (54), Expect = 8.1
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 21 KRQSVPKEELEEILIGFDIQ 40
K + VPKEE+EEIL ++I+
Sbjct: 11 KHEIVPKEEVEEILKRYNIK 30
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.137 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,588,798
Number of Sequences: 13198
Number of extensions: 63434
Number of successful extensions: 237
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 37
length of query: 293
length of database: 2,899,336
effective HSP length: 87
effective length of query: 206
effective length of database: 1,751,110
effective search space: 360728660
effective search space used: 360728660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)