BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645383|ref|NP_207557.1| hypothetical protein
[Helicobacter pylori 26695]
(428 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea) 32 0.14
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensiti... 28 1.5
pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex >g... 28 2.0
pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cr... 28 2.6
pdb|1AD2| Ribosomal Protein L1 Mutant With Serine 179 Rep... 28 2.6
pdb|1C8X|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D1... 28 2.6
pdb|1EG0|N Chain N, Fitting Of Components With Known Struct... 27 3.4
pdb|1GIY|C Chain C, Crystal Structure Of The Ribosome At 5.... 27 3.4
pdb|1SSS|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From... 27 4.4
pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich El... 27 5.8
pdb|1G0W|A Chain A, Crystal Structure Of Bovine Retinal Cre... 26 7.5
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 26 9.8
pdb|1QH4|A Chain A, Crystal Structure Of Chicken Brain-Type... 26 9.8
>pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea)
Length = 318
Score = 32.0 bits (71), Expect = 0.14
Identities = 28/102 (27%), Positives = 48/102 (46%), Gaps = 12/102 (11%)
Query: 143 GLAAGGIVGSVGLLAGPTLA--IFGALRAAEMEKKLEDAKAYCSQVEAAVKKADAMID-- 198
G AAG +VG GL+ ++A + E++ KL+ + + + + VK+A+ ID
Sbjct: 195 GAAAGVVVGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTVKQANKDIDAA 254
Query: 199 NLQAVRKMADL--------FTRQITKFDALFFSLAQEAIATM 232
L+ ++A + TR +D L SL +EA M
Sbjct: 255 KLKLTTEIAAIGEIKTETETTRFYVDYDDLMLSLLKEAAKKM 296
Score = 26.2 bits (56), Expect = 7.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 94 ELTNKKDSMENIQLDVSNTLKIIDKNL---KMSSFDTLGAVGNV 134
EL NK S++N +SNT+K +K++ K+ + A+G +
Sbjct: 225 ELKNKLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEI 268
>pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
Length = 572
Score = 28.5 bits (62), Expect = 1.5
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 248 DQLATASSTLKTLGAFLKVPI-MDKHQKLNEATQSKLEFMQREMSSLEAKHYDSVKIKFG 306
DQ+ T ++ +K +L V +KH L++ K E + E S E K D+V+
Sbjct: 155 DQIYTHTTKIKE---YLTVDYEFEKHINLDQIGVYKFEGTRLEKSHFEVKVVDTVQDYTQ 211
Query: 307 LVRRLFEF 314
L+++LF+F
Sbjct: 212 LMQKLFDF 219
>pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
Length = 1224
Score = 28.1 bits (61), Expect = 2.0
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 64 ALARFEEKRC-YIRNHVISEFLHHFNQLEGFE 94
AL +EKR Y ++ + EFL H QLEGFE
Sbjct: 340 ALGIKKEKRIQYAKDILQKEFLPHITQLEGFE 371
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 224
Score = 27.7 bits (60), Expect = 2.6
Identities = 22/87 (25%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
Query: 116 IDKNLKMSSFDTLGAVGNVVGGFSMGFGLAAGGIVGSVGLLAGPTLAIFGALRAAEMEKK 175
+D + +++ D +GAVG+ +G GL G+VG G I ++A +E +
Sbjct: 104 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIG---EIIREIKAGRIEFR 160
Query: 176 LEDAKAYCSQVEAAVKKADAMIDNLQA 202
+ A + V A + + DN++A
Sbjct: 161 NDKTGAIHAPVGKACFPPEKLADNIRA 187
>pdb|1AD2| Ribosomal Protein L1 Mutant With Serine 179 Replaced By Cysteine
Length = 228
Score = 27.7 bits (60), Expect = 2.6
Identities = 22/87 (25%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
Query: 116 IDKNLKMSSFDTLGAVGNVVGGFSMGFGLAAGGIVGSVGLLAGPTLAIFGALRAAEMEKK 175
+D + +++ D +GAVG+ +G GL G+VG G I ++A +E +
Sbjct: 108 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIG---EIIREIKAGRIEFR 164
Query: 176 LEDAKAYCSQVEAAVKKADAMIDNLQA 202
+ A + V A + + DN++A
Sbjct: 165 NDKTGAIHAPVGKACFPPEKLADNIRA 191
>pdb|1C8X|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130e Mutant
Length = 265
Score = 27.7 bits (60), Expect = 2.6
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 236 NYD------FSHYNQKEQDQLATASSTLKTL---GAFLKVPIMDKHQKLNEATQSKLEFM 286
NYD + H+N+ Q L A + ++ L G + + ++ HQ A F
Sbjct: 44 NYDTGTKTAYLHFNENVQRVLDNAVTQIRPLQQQGIKVLLSVLGNHQGAGFAN-----FP 98
Query: 287 QREMSSLEAKHYDSVKIKFGLVRRLFEFFRSLWGKNGRIQ 326
++ +S AK K+GL FE + +G NG Q
Sbjct: 99 SQQAASAFAKQLSDAVAKYGLDGVDFEDEYAEYGNNGTAQ 138
>pdb|1EG0|N Chain N, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 229
Score = 27.3 bits (59), Expect = 3.4
Identities = 22/87 (25%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
Query: 116 IDKNLKMSSFDTLGAVGNVVGGFSMGFGLAAGGIVGSVGLLAGPTLAIFGALRAAEMEKK 175
+D + +++ D +GAVG+ +G GL G+VG G I ++A +E +
Sbjct: 109 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIG---EIIREIKAGRIEFR 165
Query: 176 LEDAKAYCSQVEAAVKKADAMIDNLQA 202
+ A + V A + + DN++A
Sbjct: 166 NDKTGAIHAPVGKASFPPEKLADNIRA 192
>pdb|1GIY|C Chain C, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
Length = 228
Score = 27.3 bits (59), Expect = 3.4
Identities = 22/87 (25%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
Query: 116 IDKNLKMSSFDTLGAVGNVVGGFSMGFGLAAGGIVGSVGLLAGPTLAIFGALRAAEMEKK 175
+D + +++ D +GAVG+ +G GL G+VG G I ++A +E +
Sbjct: 108 MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIG---EIIREIKAGRIEFR 164
Query: 176 LEDAKAYCSQVEAAVKKADAMIDNLQA 202
+ A + V A + + DN++A
Sbjct: 165 NDKTGAIHAPVGKASFPPEKLADNIRA 191
>pdb|1SSS|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1SSS|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 205
Score = 26.9 bits (58), Expect = 4.4
Identities = 18/55 (32%), Positives = 27/55 (48%), Gaps = 11/55 (20%)
Query: 2 PLPFIIAAGVALVAAGYGVKKKVDADILSEETNEYIK-YINEGNDLLEEAEEVIK 55
PLP+ I A ++ + DI+ N + K Y+N N LLE E+V+K
Sbjct: 10 PLPYKIDA----------LEPYISKDIIDVHYNGHHKGYVNGANSLLERLEKVVK 54
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 26.6 bits (57), Expect = 5.8
Identities = 21/77 (27%), Positives = 31/77 (39%), Gaps = 3/77 (3%)
Query: 313 EFFRSLWGKNGRIQRAKTTPDRFPCTSCGLCCKNIAGIIELIGFDAGNGVCKFLDLETNL 372
E FRSL+G G I+ K D+ S G I+ + L L+T
Sbjct: 17 EEFRSLFGSIGEIESCKLVRDKITGQSLGY---GFVNYIDPKDAEKAINTLNGLRLQTKT 73
Query: 373 CKIYESRPLICRIDEAH 389
K+ +RP I +A+
Sbjct: 74 IKVSYARPSSASIRDAN 90
>pdb|1G0W|A Chain A, Crystal Structure Of Bovine Retinal Creatine Kinase
Length = 380
Score = 26.2 bits (56), Expect = 7.5
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query: 199 NLQAVRKMADLFTR---QITKFDALFFSLAQEAIATMKKHNYDFSHYNQKEQDQLATASS 255
++Q M ++FTR +T+ + LF K NY+F + T S
Sbjct: 238 SMQKGGNMKEVFTRFCNGLTQIETLF-----------KSKNYEFMW--NPHLGYILTCPS 284
Query: 256 TLKT---LGAFLKVPIMDKHQKLNE 277
L T G +K+P + KH+K +E
Sbjct: 285 NLGTGLRAGVHIKLPHLGKHEKFSE 309
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 25.8 bits (55), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 396 IPLKEFYAKNAEVCNALQEANHMDKSF 422
+PL FYA+N E+ + NH+ F
Sbjct: 461 VPLPVFYAENGEIIMTKETVNHVADLF 487
>pdb|1QH4|A Chain A, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|B Chain B, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|C Chain C, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|D Chain D, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
Length = 380
Score = 25.8 bits (55), Expect = 9.8
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 19/85 (22%)
Query: 199 NLQAVRKMADLFTR---QITKFDALFFSLAQEAIATMKKHNYDFSHYNQKEQDQLATASS 255
++Q M ++FTR +T+ + LF K NY+F + T S
Sbjct: 238 SMQKGGNMKEVFTRFCTGLTQIETLF-----------KSKNYEFMW--NPHLGYILTCPS 284
Query: 256 TLKT---LGAFLKVPIMDKHQKLNE 277
L T G +K+P + KH+K E
Sbjct: 285 NLGTGLRAGVHIKLPNLGKHEKFGE 309
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,252,603
Number of Sequences: 13198
Number of extensions: 87430
Number of successful extensions: 290
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 16
length of query: 428
length of database: 2,899,336
effective HSP length: 91
effective length of query: 337
effective length of database: 1,698,318
effective search space: 572333166
effective search space used: 572333166
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)