BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645384|ref|NP_207558.1| hypothetical protein
[Helicobacter pylori 26695]
(102 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BJ7| Bovine Lipocalin Allergen Bos D 2 30 0.031
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 28 0.12
pdb|1POW|A Chain A, Pyruvate Oxidase (E.C.1.2.3.3) (Wild Ty... 27 0.45
pdb|1POX|A Chain A, Pyruvate Oxidase (E.C.1.2.3.3) Mutant W... 27 0.45
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein ... 24 2.2
pdb|1BG2| Human Ubiquitous Kinesin Motor Domain 24 2.9
pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked ... 24 2.9
pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant ... 23 3.8
pdb|1OYB| Old Yellow Enzyme (Oxidized) (Oye) (E.C.1.6.99.... 23 3.8
pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme ... 23 3.8
pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthet... 23 3.8
pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n 23 3.8
pdb|1GM0|A Chain A, A Form Of The Pheromone-Binding Protein... 23 5.0
pdb|1DQE|A Chain A, Bombyx Mori Pheromone Binding Protein >... 23 5.0
pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active ... 23 6.5
pdb|1QR2|A Chain A, Human Quinone Reductase Type 2 >gi|5822... 23 6.5
pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidoc... 23 6.5
pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between ... 22 8.5
pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Huma... 22 8.5
pdb|1JLX|A Chain A, Agglutinin In Complex With T-Disacchari... 22 8.5
pdb|1AA2| Calponin Homology (Ch) Domain From Human Beta-S... 22 8.5
>pdb|1BJ7| Bovine Lipocalin Allergen Bos D 2
Length = 156
Score = 30.4 bits (67), Expect = 0.031
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 13 LTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEII 52
+TK+ E L G SF + EK+ Q GV + IE +I
Sbjct: 110 ITKMTEGLAKGTSFTPEELEKYQQLNSERGVPNENIENLI 149
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 28.5 bits (62), Expect = 0.12
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 18 ESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIGQTLSLIYRHEYLIDASDLSREQ 77
+S+E+ SF +E G E S +E I + QT + + E + + L+ +
Sbjct: 796 DSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNE 855
Query: 78 KKTAHAELQKSINENLEALR 97
+ + L+K+ E+ EALR
Sbjct: 856 IDSTWSALEKAEQEHAEALR 875
>pdb|1POW|A Chain A, Pyruvate Oxidase (E.C.1.2.3.3) (Wild Type)
pdb|1POW|B Chain B, Pyruvate Oxidase (E.C.1.2.3.3) (Wild Type)
Length = 585
Score = 26.6 bits (57), Expect = 0.45
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 2 EEQKDMGQSVILTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIGQTLSLI 61
+EQ+D Q+ + G FN D K A + IE++ D+ + I
Sbjct: 474 DEQEDTNQNDFI---------GVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAI 524
Query: 62 YRHE-YLIDA 70
+HE LIDA
Sbjct: 525 AQHEPVLIDA 534
>pdb|1POX|A Chain A, Pyruvate Oxidase (E.C.1.2.3.3) Mutant With Pro 178
Replaced By Ser, Ser 188 Replaced By Asn, And Ala 458
Replaced By Val (P178s,S188n,A458v)
pdb|1POX|B Chain B, Pyruvate Oxidase (E.C.1.2.3.3) Mutant With Pro 178
Replaced By Ser, Ser 188 Replaced By Asn, And Ala 458
Replaced By Val (P178s,S188n,A458v)
Length = 585
Score = 26.6 bits (57), Expect = 0.45
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 2 EEQKDMGQSVILTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIGQTLSLI 61
+EQ+D Q+ + G FN D K A + IE++ D+ + I
Sbjct: 474 DEQEDTNQNDFI---------GVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAI 524
Query: 62 YRHE-YLIDA 70
+HE LIDA
Sbjct: 525 AQHEPVLIDA 534
>pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
Length = 279
Score = 24.3 bits (51), Expect = 2.2
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 20/95 (21%)
Query: 8 GQSVILTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIGQTLSLIYRHEYL 67
G+S + + N G++N+ +E+ QA H D + E+ IYR+ +
Sbjct: 127 GESSHICDFIRKTLNAGAYNKAIQERLVQAEYWH---DPIRED----------IYRN-HS 172
Query: 68 IDASDLSREQKKTAHAELQKSINENLEALRNIINI 102
I +D+++E+ + +S +NL AL+ + +
Sbjct: 173 IFLADINQER------GVNESYKKNLMALKKFVMV 201
>pdb|1BG2| Human Ubiquitous Kinesin Motor Domain
Length = 325
Score = 23.9 bits (50), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 66 YLIDASDLSREQKKTAHAEL---QKSINENLEALRNIIN 101
YL+D + + K A + K+IN++L AL N+I+
Sbjct: 228 YLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVIS 266
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 23.9 bits (50), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 66 YLIDASDLSREQKKTAHAEL---QKSINENLEALRNIIN 101
YL+D + + K A + K+IN++L AL N+I+
Sbjct: 228 YLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVIS 266
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 23.5 bits (49), Expect = 3.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 16 VLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIG 55
+++ LE G N+ DR+ F Q + ++ EE + +G
Sbjct: 356 LVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLG 395
>pdb|1OYB| Old Yellow Enzyme (Oxidized) (Oye) (E.C.1.6.99.1) Complexed With
P-Hydroxybenzaldehyde
pdb|1OYA| Old Yellow Enzyme (Oxidized) (Oye) (E.C.1.6.99.1)
pdb|1OYC| Old Yellow Enzyme (Reduced) (Oye) (E.C.1.6.99.1)
Length = 400
Score = 23.5 bits (49), Expect = 3.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 16 VLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIG 55
+++ LE G N+ DR+ F Q + ++ EE + +G
Sbjct: 357 LVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLG 396
>pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Complexed With Para-Hydroxy Benzaldehyde
pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Length = 399
Score = 23.5 bits (49), Expect = 3.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 16 VLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIG 55
+++ LE G N+ DR+ F Q + ++ EE + +G
Sbjct: 356 LVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLG 395
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 23.5 bits (49), Expect = 3.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 80 TAHAELQKSINENLEALRNII 100
T H E+ ++ E L+A+R++I
Sbjct: 292 TVHHEIHFTVQEGLDAIRDVI 312
>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n
Length = 399
Score = 23.5 bits (49), Expect = 3.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 16 VLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIG 55
+++ LE G N+ DR+ F Q + ++ EE + +G
Sbjct: 356 LVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLG 395
>pdb|1GM0|A Chain A, A Form Of The Pheromone-Binding Protein From Bombyx Mori
Length = 142
Score = 23.1 bits (48), Expect = 5.0
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 13 LTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDI 54
L+ L L+ G+ + + +FA + HG ++++ +++IDI
Sbjct: 55 LSTKLNMLDPEGNLHHGNAMEFA---KKHGADETMAQQLIDI 93
>pdb|1DQE|A Chain A, Bombyx Mori Pheromone Binding Protein
pdb|1DQE|B Chain B, Bombyx Mori Pheromone Binding Protein
Length = 137
Score = 23.1 bits (48), Expect = 5.0
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 13 LTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDI 54
L+ L L+ G+ + + +FA + HG ++++ +++IDI
Sbjct: 55 LSTKLNMLDPEGNLHHGNAMEFA---KKHGADETMAQQLIDI 93
>pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active Form Of The
Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
Length = 498
Score = 22.7 bits (47), Expect = 6.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 23 GGSFNQRDREKFAQ-AARTHGVEDSVIEEIIDIGQTLSLIY 62
GG+ +K A+ AAR V+ VIEE + + TL +Y
Sbjct: 195 GGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVY 235
>pdb|1QR2|A Chain A, Human Quinone Reductase Type 2
pdb|1QR2|B Chain B, Human Quinone Reductase Type 2
pdb|2QR2|A Chain A, Human Quinone Reductase Type 2, Complex With Menadione
pdb|2QR2|B Chain B, Human Quinone Reductase Type 2, Complex With Menadione
Length = 230
Score = 22.7 bits (47), Expect = 6.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 50 EIIDIGQTLSLIYRHEYLIDASDLSREQKKTAHAEL 85
E+ + G Y+ L ASD++ EQKK A+L
Sbjct: 63 EVFNYGVETHEAYKQRSL--ASDITDEQKKVREADL 96
>pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|B Chain B, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|C Chain C, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|D Chain D, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|E Chain E, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|F Chain F, Adenylate Kinase From Sulfolobus Acidocaldarius
Length = 194
Score = 22.7 bits (47), Expect = 6.5
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 7 MGQSVILTKVLESLENGGSFNQ 28
+G+S +L KV E L+N G N+
Sbjct: 12 VGKSTVLAKVKEILDNQGINNK 33
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
Length = 182
Score = 22.3 bits (46), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 42 GVEDSVIEEIIDIGQTLSLI 61
G + ++E+IID G TLS +
Sbjct: 96 GKDVLIVEDIIDSGNTLSKV 115
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
At 1.1 Angstrom Resolution
Length = 109
Score = 22.3 bits (46), Expect = 8.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 64 HEYLIDASDLSREQKKTAHAELQKSIN 90
H++ D D + +K AH LQ + N
Sbjct: 42 HKHRPDLIDFDKLKKSNAHYNLQNAFN 68
>pdb|1JLX|A Chain A, Agglutinin In Complex With T-Disaccharide
pdb|1JLX|B Chain B, Agglutinin In Complex With T-Disaccharide
pdb|1JLY|A Chain A, Crystal Structure Of Amaranthus Caudatus Agglutinin
pdb|1JLY|B Chain B, Crystal Structure Of Amaranthus Caudatus Agglutinin
Length = 304
Score = 22.3 bits (46), Expect = 8.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 38 ARTHGVEDSVIEEIIDIGQ 56
A T V+++ I EII++GQ
Sbjct: 284 AATQNVDETAILEIIELGQ 302
>pdb|1AA2| Calponin Homology (Ch) Domain From Human Beta-Spectrin
Length = 108
Score = 22.3 bits (46), Expect = 8.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 64 HEYLIDASDLSREQKKTAHAELQKSIN 90
H++ D D + +K AH LQ + N
Sbjct: 41 HKHRPDLIDFDKLKKSNAHYNLQNAFN 67
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.130 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,500
Number of Sequences: 13198
Number of extensions: 15738
Number of successful extensions: 47
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 21
length of query: 102
length of database: 2,899,336
effective HSP length: 78
effective length of query: 24
effective length of database: 1,869,892
effective search space: 44877408
effective search space used: 44877408
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)