BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645385|ref|NP_207559.1| hypothetical protein
[Helicobacter pylori 26695]
(274 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H2R|L Chain L, Three-Dimensional Structure Of Ni-Fe Hy... 27 2.5
pdb|1H2A|L Chain L, Single Crystals Of Hydrogenase From Des... 27 2.5
pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogen... 26 5.6
pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein F... 25 9.6
pdb|1C0E|A Chain A, Active Site S19a Mutant Of Bovine Heart... 25 9.6
pdb|1ESG|B Chain B, Restriction Endonuclease Bamhi Bound To... 25 9.6
pdb|1DG9|A Chain A, Crystal Structure Of Bovine Low Molecul... 25 9.6
pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation I... 25 9.6
pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation I... 25 9.6
pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Redu... 25 9.6
>pdb|1H2R|L Chain L, Three-Dimensional Structure Of Ni-Fe Hydrogenase From
Desulfivibrio Vulgaris Miyazaki F In The Reduced Form
At 1.4 A Resolution
Length = 534
Score = 26.9 bits (58), Expect = 2.5
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 16 VGVDITESKMLTKFASSLLMNLYEYIGNGKDPKEASDHAMR 56
+ V++ K+ ++SS L E I G+DP++A R
Sbjct: 21 IEVEVENGKVKNAYSSSTLFRGLEIILKGRDPRDAQHFTQR 61
>pdb|1H2A|L Chain L, Single Crystals Of Hydrogenase From Desulfovibrio
Vulgaris
Length = 567
Score = 26.9 bits (58), Expect = 2.5
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 16 VGVDITESKMLTKFASSLLMNLYEYIGNGKDPKEASDHAMR 56
+ V++ K+ ++SS L E I G+DP++A R
Sbjct: 39 IEVEVENGKVKNAYSSSTLFRGLEIILKGRDPRDAQHFTQR 79
>pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 564
Score = 25.8 bits (55), Expect = 5.6
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 18 VDITESKMLTKFASSLLMNLYEYIGNGKDPKEASDHAMRDAKDVVLSCGRVAFLKDIVSN 77
V++ K+ ++SS L E I G+DP++A R +CG ++ + S+
Sbjct: 32 VEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQR-------ACGVCTYVHALASS 84
>pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From
Methanobacterium Thermoautotrophicum
Length = 208
Score = 25.0 bits (53), Expect = 9.6
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 3 ENMQDISLQSSHEVGVDITESKMLTKFASSLLMNLYEYIGNGKDPKEASDHAMR--DAKD 60
E + D+ S VG+ + + ++ + A+ + +GK P + +R DA D
Sbjct: 104 ELIPDVITGGSSRVGIRVPDDEICRRIAARFPVTATSANISGKPPSPRLEEIVRDLDAVD 163
Query: 61 VVLSCG 66
+VL G
Sbjct: 164 LVLDAG 169
>pdb|1C0E|A Chain A, Active Site S19a Mutant Of Bovine Heart Phosphotyrosyl
Phosphatase
pdb|1C0E|B Chain B, Active Site S19a Mutant Of Bovine Heart Phosphotyrosyl
Phosphatase
Length = 157
Score = 25.0 bits (53), Expect = 9.6
Identities = 19/65 (29%), Positives = 26/65 (39%), Gaps = 8/65 (12%)
Query: 169 NLRDVLKEAKLARQRRIEIEKECRESIRLLEIYRNQFKEVFERYFHGNVKFFNENFNNLE 228
NLRD+ R+ K CR I LL Y Q + + E ++GN F +
Sbjct: 95 NLRDL--------NRKSNQVKNCRAKIELLGSYDPQKQLIIEDPYYGNDADFETVYQQCV 146
Query: 229 RALYA 233
R A
Sbjct: 147 RCCRA 151
>pdb|1ESG|B Chain B, Restriction Endonuclease Bamhi Bound To A Non-Specific
Dna.
pdb|2BAM|B Chain B, Restriction Endonuclease Bamhi Complex With Dna And
Calcium Ions (Pre-Reactive Complex).
pdb|1ESG|A Chain A, Restriction Endonuclease Bamhi Bound To A Non-Specific
Dna.
pdb|3BAM|B Chain B, Restriction Endonuclease Bamhi Complex With Dna And
Manganese Ions (Post-Reactive Complex)
pdb|2BAM|A Chain A, Restriction Endonuclease Bamhi Complex With Dna And
Calcium Ions (Pre-Reactive Complex).
pdb|3BAM|A Chain A, Restriction Endonuclease Bamhi Complex With Dna And
Manganese Ions (Post-Reactive Complex)
pdb|1BHM|B Chain B, Restriction Endonuclease Bamhi Complex With Dna
pdb|1BAM| Restriction Endonuclease Bamhi (E.C.3.1.21.4)
pdb|1BHM|A Chain A, Restriction Endonuclease Bamhi Complex With Dna
Length = 213
Score = 25.0 bits (53), Expect = 9.6
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 156 NFVGALLSKTLCENLRDVLKEAKLARQRRIEIEKECRESIRLLEIYR-----NQFKEVFE 210
N G + K LC L + R++ ++I K ++ +++Y+ ++ K V
Sbjct: 53 NCNGVVPIKELCYTLLE--DTYNWYREKPLDILKLEKKKGGPIDVYKEFIENSELKRVGM 110
Query: 211 RYFHGNVKFFNENFNNLERALYAGDADLAI 240
+ GN+ + + N L L G+ DLAI
Sbjct: 111 EFETGNISSAHRSMNKLLLGLKHGEIDLAI 140
>pdb|1DG9|A Chain A, Crystal Structure Of Bovine Low Molecular Weight Ptpase
Complexed With Hepes
pdb|1PNT| Tyrosine Phosphatase (E.C.3.1.3.2) (Orthophosphoric Monoester
Phosphohydrolase)
pdb|1BVH| Tyrosine Phosphatase (E.C.3.1.3.2) (Orthophosphoric Monoester
Phosphohydrolase (Acid Optimum)) (Nmr, 15 Structures)
pdb|1PHR| Molecule: Low Molecular Weight Phosphotyrosine Protein
Phosphotase; Ec: 3.1.3.48; Heterogen: Sulphate Ion
Length = 157
Score = 25.0 bits (53), Expect = 9.6
Identities = 19/65 (29%), Positives = 26/65 (39%), Gaps = 8/65 (12%)
Query: 169 NLRDVLKEAKLARQRRIEIEKECRESIRLLEIYRNQFKEVFERYFHGNVKFFNENFNNLE 228
NLRD+ R+ K CR I LL Y Q + + E ++GN F +
Sbjct: 95 NLRDL--------NRKSNQVKNCRAKIELLGSYDPQKQLIIEDPYYGNDADFETVYQQCV 146
Query: 229 RALYA 233
R A
Sbjct: 147 RCCRA 151
>pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 25.0 bits (53), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 130 KILGTKAMAVVGQTFIPIPGVGAIIGN 156
+I+ T+ M V QT+ P P V AII +
Sbjct: 262 QIVSTRGMTVDTQTYHPEPRVAAIIAS 288
>pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 25.0 bits (53), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 130 KILGTKAMAVVGQTFIPIPGVGAIIGN 156
+I+ T+ M V QT+ P P V AII +
Sbjct: 262 QIVSTRGMTVDTQTYHPEPRVAAIIAS 288
>pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1GJQ|B Chain B, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1NIR|B Chain B, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|A Chain A, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|B Chain B, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1BL9|A Chain A, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1BL9|B Chain B, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
Length = 543
Score = 25.0 bits (53), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 130 KILGTKAMAVVGQTFIPIPGVGAIIGN 156
+I+ T+ M V QT+ P P V AII +
Sbjct: 262 QIVSTRGMTVDTQTYHPEPRVAAIIAS 288
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,527,285
Number of Sequences: 13198
Number of extensions: 62130
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 10
length of query: 274
length of database: 2,899,336
effective HSP length: 87
effective length of query: 187
effective length of database: 1,751,110
effective search space: 327457570
effective search space used: 327457570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)