BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644708|ref|NP_206878.1| hypothetical protein
[Helicobacter pylori 26695]
         (85 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1GYU|A  Chain A, Gamma-Adaptin Appendage Domain From Cla...    25  1.1
pdb|1GYV|A  Chain A, Gamma-Adaptin Appendage Domain From Cla...    25  1.1
pdb|1GYW|A  Chain A, Gamma-Adaptin Appendage Domain From Cla...    25  1.5
pdb|1IU1|A  Chain A, Crystal Structure Of Human Gamma1-Adapt...    25  1.5
pdb|1BFN|    Beta-AmylaseBETA-Cyclodextrin Complex                 23  5.6
pdb|1QUV|A  Chain A, Crystal Structure Of The Rna Directed R...    22  9.6
pdb|1FIQ|C  Chain C, Crystal Structure Of Xanthine Oxidase F...    22  9.6
pdb|1FO4|A  Chain A, Crystal Structure Of Xanthine Dehydroge...    22  9.6

>pdb|1GYU|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1
          Length = 140

 Score = 25.4 bits (54), Expect = 1.1
 Identities = 17/67 (25%), Positives = 28/67 (41%)

Query: 13 SVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNKTAPAQETQSASKP 72
          S++   K+G  +   F+ SN     T  T  A+N+T +D + F      P         P
Sbjct: 24 SITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSP 83

Query: 73 DTKVNPS 79
           + V P+
Sbjct: 84 SSSVVPA 90



>pdb|1GYV|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor
          Ap1, L762e Mutant
          Length = 120

 Score = 25.4 bits (54), Expect = 1.1
 Identities = 17/67 (25%), Positives = 28/67 (41%)

Query: 13 SVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNKTAPAQETQSASKP 72
          S++   K+G  +   F+ SN     T  T  A+N+T +D + F      P         P
Sbjct: 4  SITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQELSP 63

Query: 73 DTKVNPS 79
           + V P+
Sbjct: 64 SSSVVPA 70



>pdb|1GYW|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1
          A753d Mutant
 pdb|1GYW|B Chain B, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1
          A753d Mutant
          Length = 128

 Score = 25.0 bits (53), Expect = 1.5
 Identities = 17/67 (25%), Positives = 28/67 (41%)

Query: 13 SVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNKTAPAQETQSASKP 72
          S++   K+G  +   F+ SN     T  T  A+N+T +D + F      P         P
Sbjct: 12 SITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQADVPKTFQLQLLSP 71

Query: 73 DTKVNPS 79
           + V P+
Sbjct: 72 SSSVVPA 78



>pdb|1IU1|A Chain A, Crystal Structure Of Human Gamma1-Adaptin Ear Domain
 pdb|1IU1|B Chain B, Crystal Structure Of Human Gamma1-Adaptin Ear Domain
          Length = 146

 Score = 25.0 bits (53), Expect = 1.5
 Identities = 16/67 (23%), Positives = 28/67 (40%)

Query: 13 SVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNKTAPAQETQSASKP 72
          S++   K+G  +   F+ SN     T  T  A+N+T +D + F      P         P
Sbjct: 30 SITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSP 89

Query: 73 DTKVNPS 79
           + + P+
Sbjct: 90 SSSIVPA 96



>pdb|1BFN|   Beta-AmylaseBETA-Cyclodextrin Complex
          Length = 495

 Score = 23.1 bits (48), Expect = 5.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)

Query: 40  RTPGANNNTPIDTSMFG 56
           R  G NNN P   SMFG
Sbjct: 399 RPQGVNNNGPPKLSMFG 415



>pdb|1QUV|A Chain A, Crystal Structure Of The Rna Directed Rna Polymerase Of
           Hepatitis C Virus
          Length = 578

 Score = 22.3 bits (46), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 48  TPIDTSMFGSNKTAPAQETQSASKP 72
           TPIDT++   N+    Q  +   KP
Sbjct: 132 TPIDTTIMAKNEVFCVQPEKGGRKP 156



>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
          Length = 763

 Score = 22.3 bits (46), Expect = 9.6
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 39  TRTPGANNNTP----IDTSMFGSNKTAPAQETQSASKPDTKVNPSASW 82
           T T    N++P    + T ++G       Q      +P  K NP  SW
Sbjct: 497 TSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSW 544



>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
            Bovine Milk
 pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
            Bovine Milk
          Length = 1332

 Score = 22.3 bits (46), Expect = 9.6
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 39   TRTPGANNNTP----IDTSMFGSNKTAPAQETQSASKPDTKVNPSASW 82
            T T    N++P    + T ++G       Q      +P  K NP  SW
Sbjct: 1066 TSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSW 1113



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.307    0.121    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,298
Number of Sequences: 13198
Number of extensions: 17171
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 8
length of query: 85
length of database: 2,899,336
effective HSP length: 61
effective length of query: 24
effective length of database: 2,094,258
effective search space: 50262192
effective search space used: 50262192
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)