BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645388|ref|NP_207562.1| molybdopterin-guanine
dinucleotide biosynthesis protein A (mobA) [Helicobacter pylori 26695]
(201 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1NSA| Three-Dimensional Structure Of Porcine Procarbo... 29 0.43
pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dime... 28 0.95
pdb|1CPB| Carboxypeptidase B (E.C.3.4.12.3) Fraction Ii 27 1.2
pdb|1PKL|G Chain G, The Structure Of Leishmania Pyruvate Ki... 27 1.6
pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb... 25 4.7
pdb|1YEE|H Chain H, Structure Of A Catalytic Antibody, Igg2... 25 4.7
pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of E... 25 8.0
pdb|1HSL|A Chain A, Histidine-Binding Protein Complexed Wit... 25 8.0
pdb|1EPN|E Chain E, Endothia Aspartic Proteinase (Endothiap... 25 8.0
pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794 >... 25 8.0
>pdb|1NSA| Three-Dimensional Structure Of Porcine Procarboxypeptidase B: A
Structural Basis Of Its Inactivity
Length = 395
Score = 28.9 bits (63), Expect = 0.43
Identities = 13/32 (40%), Positives = 20/32 (61%)
Query: 22 FITNNIQTNKALMPLKSYSSLLEYQYTRLLKL 53
FI NN+ + KA + + SYS ++ Y Y+ KL
Sbjct: 268 FIRNNLSSIKAYLTIHSYSQMILYPYSYDYKL 299
>pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|1KWM|B Chain B, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
Length = 402
Score = 27.7 bits (60), Expect = 0.95
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 22 FITNNIQTNKALMPLKSYSSLLEYQYTRLLKL 53
FI N + + KA + + SYS ++ Y Y+ KL
Sbjct: 274 FIRNKLSSIKAYLTIHSYSQMMIYPYSYAYKL 305
>pdb|1CPB| Carboxypeptidase B (E.C.3.4.12.3) Fraction Ii
Length = 306
Score = 27.3 bits (59), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 22 FITNNIQTNKALMPLKSYSSLLEYQYTRLLKLFK 55
FI N++ + KA + + SYS ++ Y Y+ KL K
Sbjct: 179 FIRNHLSSIKAYLTIHSYSQMMLYPYSYDYKLPK 212
>pdb|1PKL|G Chain G, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|D Chain D, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|E Chain E, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|C Chain C, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|H Chain H, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|F Chain F, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|B Chain B, The Structure Of Leishmania Pyruvate Kinase
Length = 499
Score = 26.9 bits (58), Expect = 1.6
Identities = 14/62 (22%), Positives = 31/62 (49%)
Query: 3 NPIIDNIPCVLLAGGKSSRFITNNIQTNKALMPLKSYSSLLEYQYTRLLKLFKKVIISTK 62
N + + CV+L+G + N + A + L++ S+L EY + +K + + +S
Sbjct: 319 NAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSAD 378
Query: 63 KS 64
++
Sbjct: 379 EA 380
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 25.4 bits (54), Expect = 4.7
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 27/166 (16%)
Query: 3 NPIIDNIPCVLLAGGKSSRFITNNIQTNKALMPLKSYSSLLEYQYTRLLKLFKK----VI 58
N I D +P L ++ N+I +AL LK+ L + L K V+
Sbjct: 163 NQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222
Query: 59 ISTKKSYE--LNAPYLLEKESDLFSPLFGIHNAFLTLQTPYIFFIPIDT----------- 105
+T K+ + L P ++ + D P H T + +IF+ P+
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRV 282
Query: 106 --PL-----VSFESIKALCGIK---NFSVTYAKSPTKEHYLISLWH 141
PL VS++ + K +T K PTK+ Y+ W+
Sbjct: 283 TQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWY 328
>pdb|1YEE|H Chain H, Structure Of A Catalytic Antibody, Igg2a Fab Fragment
(D2.5)
Length = 222
Score = 25.4 bits (54), Expect = 4.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 105 TPLVSFESIKALCGIKNFSVTYAKSPTKEHYLISLWHQNTL 145
T + S+K+ F V + P +E Y++ W Q TL
Sbjct: 78 TAYMQLSSLKSDDSAVYFCVRWGFIPVREDYVLDYWGQGTL 118
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 24.6 bits (52), Expect = 8.0
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 59 ISTKKSYELNAPYLLEKESDLFSPLFGIHNAFLTLQTPYIFFIPIDTPLVS-FESIKALC 117
+S KS Y+ + L S FG+ +A + + YI F PI T S F I++
Sbjct: 238 VSGAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSA 297
Query: 118 GI 119
GI
Sbjct: 298 GI 299
>pdb|1HSL|A Chain A, Histidine-Binding Protein Complexed With L-Histidine
pdb|1HSL|B Chain B, Histidine-Binding Protein Complexed With L-Histidine
pdb|1HPB|P Chain P, Histidine-Binding Protein (Hisj) Complexed With Histidine
Length = 238
Score = 24.6 bits (52), Expect = 8.0
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 101 IPIDTPLVSFESIKALCGIKNFSVTYAKSPTKEHYLISLWHQNTLNALIYALKTQNYRLS 160
I D FES A + F + AK K + +N L+ALI +LK +
Sbjct: 8 IGTDPTYAPFESKNAQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKI--- 64
Query: 161 DLVKNTSSVAINFDKEEEFLNLNTLKDYELAV 192
D + ++ S+ +E F + D L V
Sbjct: 65 DAIMSSLSITEKRQQEIAFTDKLYAADSRLVV 96
>pdb|1EPN|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.22) Complexed With Cp-80,794 (Mor Phe
Cys+ch3 Nor)
pdb|1EPM|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.22) Complexed With Ps2 (Thr Phe Gln Ala Psa
Leu Arg Glu)
pdb|2ER7|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) Complex With H-261
pdb|3ER5|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) H-189 Complex
pdb|5ER2|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) Complex With Cp-69,799
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.22)complexed With Pd-130,693 (Mas Phe
Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.22) Complexed With Pd-133,450 (Sot Phe
Gly+scc Gcl)
pdb|1ENT|E Chain E, Endothiapepsin (E.C.3.4.23.22) Complex With The Inhibitor
Pd130328
pdb|4ER2|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) Complex With Pepstatin
pdb|1EED|P Chain P, Endothiapepsin (E.C.3.4.23.22) Complex With The Cyclohexyl
Renin Inhibitor Pd125754
pdb|1EPL|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.22) Complexed With Ps1 (Pro Leu Glu Psa Arg
Leu)
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.22) Complexed With Cp-81,282 (Mor Phe Nle
Chf Nme)
pdb|1ER8|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) Complex With H-77
pdb|2ER6|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) Complex With H-256
pdb|3ER3|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) Complex With Cp-71,362
pdb|4ER1|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) Complex With PD125967
pdb|5ER1|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) Bw624 Complex
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|4ER4|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) H-142 Complex
pdb|4APE| Acid Proteinase (E.C.3.4.23.10), Endothiapepsin
pdb|2ER9|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) Complex With L363,564
pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.22) Complexed With Pd-135,040 (Tsm Dph His
Chf Emr)
pdb|2ER0|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin)
(E.C.3.4.23.6) Complex With L364,099
Length = 330
Score = 24.6 bits (52), Expect = 8.0
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 59 ISTKKSYELNAPYLLEKESDLFSPLFGIHNAFLTLQTPYIFFIPIDTPLVS-FESIKALC 117
+S KS Y+ + L S FG+ +A + + YI F PI T S F I++
Sbjct: 239 VSGAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSA 298
Query: 118 GI 119
GI
Sbjct: 299 GI 300
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
Length = 329
Score = 24.6 bits (52), Expect = 8.0
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 59 ISTKKSYELNAPYLLEKESDLFSPLFGIHNAFLTLQTPYIFFIPIDTPLVS-FESIKALC 117
+S KS Y+ + L S FG+ +A + + YI F PI T S F I++
Sbjct: 238 VSGAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSA 297
Query: 118 GI 119
GI
Sbjct: 298 GI 299
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,036,030
Number of Sequences: 13198
Number of extensions: 37096
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 10
length of query: 201
length of database: 2,899,336
effective HSP length: 84
effective length of query: 117
effective length of database: 1,790,704
effective search space: 209512368
effective search space used: 209512368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)