BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645390|ref|NP_207564.1| hypothetical protein
[Helicobacter pylori 26695]
         (245 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1AUO|A  Chain A, Carboxylesterase From Pseudomonas Fluor...    25  8.2

>pdb|1AUO|A Chain A, Carboxylesterase From Pseudomonas Fluorescens
 pdb|1AUO|B Chain B, Carboxylesterase From Pseudomonas Fluorescens
 pdb|1AUR|A Chain A, Pmsf-Inhibited Carboxylesterase From Pseudomonas
           Fluorescens
 pdb|1AUR|B Chain B, Pmsf-Inhibited Carboxylesterase From Pseudomonas
           Fluorescens
          Length = 218

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 139 CIVWVFASSLQSFRFLSVSDCVDFSLFTLALIL 171
           C++W+       + F+ V++ +  SL T   +L
Sbjct: 16  CVIWLHGLGADRYDFMPVAEALQESLLTTRFVL 48



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.338    0.150    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,237,702
Number of Sequences: 13198
Number of extensions: 42498
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 1
length of query: 245
length of database: 2,899,336
effective HSP length: 86
effective length of query: 159
effective length of database: 1,764,308
effective search space: 280524972
effective search space used: 280524972
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 53 (25.0 bits)