BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645392|ref|NP_207566.1| hypothetical protein
[Helicobacter pylori 26695]
(363 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosin... 34 0.030
pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosph... 34 0.030
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of B... 31 0.19
pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase >gi|4388837|pd... 28 1.3
pdb|1BQC|A Chain A, Beta-Mannanase From Thermomonospora Fus... 28 1.3
pdb|1GOX| Glycolate Oxidase (E.C.1.1.3.1) 28 1.6
pdb|1GYL|A Chain A, Glycolate Oxidase (E.C.1.1.3.15) Mutant... 28 1.6
pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Im... 28 1.6
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis... 28 1.6
pdb|1AL7| Three-Dimensional Structures Of Glycolate Oxida... 28 1.6
pdb|1BUC|A Chain A, Butyryl-Coa Dehydrogenase (Bcad) (Bacte... 28 2.1
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Comp... 27 3.6
pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptopha... 27 3.6
>pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
Length = 514
Score = 33.9 bits (76), Expect = 0.030
Identities = 21/56 (37%), Positives = 31/56 (54%), Gaps = 1/56 (1%)
Query: 201 VPKVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGVQMATRFLGTKECDAKVY 256
V KV E ++ +G +P+IA GGI + I L+LGAS V M + T E + +
Sbjct: 347 VYKVSEYARRFG-VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYF 401
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 33.9 bits (76), Expect = 0.030
Identities = 21/56 (37%), Positives = 31/56 (54%), Gaps = 1/56 (1%)
Query: 201 VPKVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGVQMATRFLGTKECDAKVY 256
V KV E ++ +G +P+IA GGI + I L+LGAS V M + T E + +
Sbjct: 347 VYKVSEYARRFG-VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYF 401
>pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/38 (44%), Positives = 21/38 (54%)
Query: 213 NIPIIAAGGIWDRKDIDTMLSLGASGVQMATRFLGTKE 250
NI IIA GGI D+ ++ GA V + F GTKE
Sbjct: 256 NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKE 293
>pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-Trna Synthetase
Length = 438
Score = 28.5 bits (62), Expect = 1.3
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 206 EASKEWGNIPIIAAGGIWDRKDIDTMLSL---GASGVQMATRFLGTKECDAKVYADLLPT 262
E ++E + AG +W+ KD+ + L G+ T K+ D +++ L+P
Sbjct: 9 EITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITA--PKKKVDPELFK-LIPK 65
Query: 263 LKKEDILLIKSPVGYPARA 281
L+ ED++ ++ V + +A
Sbjct: 66 LRSEDVVAVEGVVNFTPKA 84
>pdb|1BQC|A Chain A, Beta-Mannanase From Thermomonospora Fusca
pdb|2MAN|A Chain A, Mannotriose Complex Of Thermomonospora Fusca
Beta-Mannanase
pdb|3MAN|A Chain A, Mannohexaose Complex Of Thermomonospora Fusca
Beta-Mannanase
Length = 302
Score = 28.5 bits (62), Expect = 1.3
Identities = 25/84 (29%), Positives = 40/84 (46%), Gaps = 3/84 (3%)
Query: 81 NEIFANARKICGNNPLGANILYAINDYGRVLRDSCEAGANIIITGAGLPTNMPEFAKDFS 140
N + NA ++ ++P G N +++I+ YG + S AGLP + EF D S
Sbjct: 173 NTMRNNADQVYASDPTG-NTVFSIHMYGVYSQASTITSYLEHFVNAGLPLIIGEFGHDHS 231
Query: 141 D--VALIPIISSAKALKILCKRWS 162
D I++ A+ LK+ WS
Sbjct: 232 DGNPDEDTIMAEAERLKLGYIGWS 255
>pdb|1GOX| Glycolate Oxidase (E.C.1.1.3.1)
Length = 369
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 203 KVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGV 239
+VV+A++ G IP+ GG+ D+ L+LGA+GV
Sbjct: 271 EVVKAAQ--GRIPVFLDGGVRRGTDVFKALALGAAGV 305
>pdb|1GYL|A Chain A, Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f)
pdb|1GYL|B Chain B, Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f)
Length = 369
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 203 KVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGV 239
+VV+A++ G IP+ GG+ D+ L+LGA+GV
Sbjct: 271 EVVKAAQ--GRIPVFLDGGVRRGTDVFKALALGAAGV 305
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 208 SKEWGNIPIIAAGGIWDRKDIDTMLSLGASGVQMATRFLGTKE 250
++E+G IIA GGI DI L+ G + V + + F GT E
Sbjct: 332 AREYGKT-IIADGGIKYSGDIVKALAAGGNAVXLGSXFAGTDE 373
>pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions.
pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
Length = 311
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/31 (41%), Positives = 19/31 (60%)
Query: 213 NIPIIAAGGIWDRKDIDTMLSLGASGVQMAT 243
+IPII GG+ + +D+ M GAS V + T
Sbjct: 241 DIPIIGMGGVANAQDVLEMYMAGASAVAVGT 271
>pdb|1AL7| Three-Dimensional Structures Of Glycolate Oxidase With Bound
Active-Site Inhibitors
pdb|1AL8| Three-Dimensional Structure Of Glycolate Oxidase With Bound
Active-Site Inhibitors
Length = 359
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 203 KVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGV 239
+VV+A++ G IP+ GG+ D+ L+LGA+GV
Sbjct: 271 EVVKAAQ--GRIPVFLDGGVRRGTDVFKALALGAAGV 305
>pdb|1BUC|A Chain A, Butyryl-Coa Dehydrogenase (Bcad) (Bacterial Short-Chain
Acyl-Coa Dehydrogenase) (E.C.1.3.99.2) Complexed With
Fad And Acetoacetyl-Coenzyme A
pdb|1BUC|B Chain B, Butyryl-Coa Dehydrogenase (Bcad) (Bacterial Short-Chain
Acyl-Coa Dehydrogenase) (E.C.1.3.99.2) Complexed With
Fad And Acetoacetyl-Coenzyme A
Length = 383
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/67 (26%), Positives = 32/67 (46%), Gaps = 10/67 (14%)
Query: 194 EFRLENLVPKVVEASKEWGNIPIIAAGGIWDRKDIDTMLSLGASGVQMATRFLGTKECDA 253
+F + L P V E + GI+D++ ID +LSLG +G ++ G+ +
Sbjct: 18 DFGEKKLAPTVTERDHK----------GIYDKELIDELLSLGITGAYFEEKYGGSGDDGG 67
Query: 254 KVYADLL 260
V + +L
Sbjct: 68 DVLSYIL 74
>pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
Length = 367
Score = 26.9 bits (58), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (55%)
Query: 212 GNIPIIAAGGIWDRKDIDTMLSLGASGVQMAT 243
G +PII GG+ +D + GAS VQ+ T
Sbjct: 297 GRVPIIGVGGVSSGQDALEKIRAGASLVQLYT 328
>pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1GEQ|A Chain A, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
Length = 248
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 24 MGVGISWDELAGNVAKEGALGVISAVGTGYYKNMRFVERIVAKKPFEALNFYSKK 78
+G G+S E ++ KEGA GV+ VG+ K I+ +K EA F KK
Sbjct: 196 VGFGVSKREHVVSLLKEGANGVV--VGSALVK-------IIGEKGREATEFLKKK 241
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,266,040
Number of Sequences: 13198
Number of extensions: 102674
Number of successful extensions: 228
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 17
length of query: 363
length of database: 2,899,336
effective HSP length: 89
effective length of query: 274
effective length of database: 1,724,714
effective search space: 472571636
effective search space used: 472571636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)