BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645393|ref|NP_207567.1| tyrosyl-tRNA synthetase
(tyrS) [Helicobacter pylori 26695]
(402 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Th... 277 1e-75
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In... 129 8e-31
pdb|2TS1| Tyrosyl-Transfer RNA Synthetase (E.C.6.1.1.1) >... 121 2e-28
pdb|1TYA|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.... 96 6e-21
pdb|4TS1|A Chain A, Des-(Ile 318-Arg 417)-Tyrosyl-Transfer ... 96 6e-21
pdb|1TYD|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.... 96 7e-21
pdb|1TYC| Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) M... 96 9e-21
pdb|1TYB|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.... 95 1e-20
pdb|1JH3|A Chain A, Solution Structure Of Tyrosyl-Trna Synt... 35 0.015
pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases... 30 0.37
pdb|1FJG|D Chain D, Structure Of The Thermus Thermophilus 3... 30 0.37
pdb|1J5E|D Chain D, Structure Of The Thermus Thermophilus 3... 30 0.37
pdb|1IBL|D Chain D, Structure Of The Thermus Thermophilus 3... 30 0.37
pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free ... 30 0.64
pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear R... 28 1.4
pdb|1I4X|A Chain A, Staphylococcal Enterotoxin C2, Monoclin... 28 2.4
pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearot... 27 4.1
pdb|1J91|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase... 27 4.1
pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex O... 27 4.1
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases... 27 5.4
pdb|1BS0|A Chain A, Plp-Dependent Acyl-Coa Synthase 26 7.0
pdb|1A88|A Chain A, Chloroperoxidase L >gi|3892002|pdb|1A88... 26 7.0
pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P2... 26 7.0
pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form... 26 7.0
pdb|1KSK|A Chain A, Structure Of Rsua >gi|20664191|pdb|1KSL... 26 7.0
pdb|1IHN|B Chain B, Mt938 >gi|14277813|pdb|1IHN|A Chain A, ... 26 9.2
>pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3F|B Chain B, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3E|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Wild-Type Trnatyr(Gua) And With Atp And
Tyrosinol
Length = 432
Score = 277 bits (709), Expect = 1e-75
Identities = 172/426 (40%), Positives = 249/426 (58%), Gaps = 36/426 (8%)
Query: 8 ALKEIARGTNEIIGLEYIEKLVRKYYETNERFIVKAGFDPTAPDLHLGHTVLIQKLALLQ 67
AL + RG EI+ E +L+ K E VK G DPT PDLHLGH V+++K+ Q
Sbjct: 11 ALALLKRGAEEIVPEE---ELLAKLKE-GRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQ 66
Query: 68 QYGARVKFLIGDFTAMIGDPTGKNETRKPLNREQVLENAKTYEEQIYKIL-DEKHT-EVC 125
+ G +V +IGDFT MIGDP+G+++TR PL E+ ENAKTY Q KIL E H E+
Sbjct: 67 ELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELR 126
Query: 126 FNSTWLDALGAKGMIELCAKFSVARMLERDDFTKRYKENRPISIVEFLYPLLQGYDSVAM 185
+NS WL+ L K ++ L + +VA+MLER+DF KRY+ PIS+ E LYP Q YDSVA+
Sbjct: 127 YNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAI 186
Query: 186 DADIELGGNDQKFNLLVGRFLQRAYGLNKEQSVITMPLLEGLDGVQKMSKSLGNYVGITE 245
AD+E+GG DQ+FNLLVGR +QRAYG Q MPLL GLDG +KMSKSL NY+G+TE
Sbjct: 187 RADVEMGGTDQRFNLLVGREVQRAYG-QSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245
Query: 246 EPNAMFGKIMSVSDDLMWRYYTLLSTKTLEEIEDL-------KHGILNQTLHPKAVKEDL 298
P AMF K+M V D L+ Y+ LL+ EEIE L H +L + L +
Sbjct: 246 PPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQI 305
Query: 299 ASEIVARYYDN----------------DQAIKAKEQFSKVFSANL---LPEI-LSESDFD 338
I +Y++ ++ +A+ ++ +V + +PE+ + S+
Sbjct: 306 PPRIDRAFYESLGYAWEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIPASELK 365
Query: 339 EG-VGILDVLKQIGFCPSTSQARRDIQGGGVKINQEVIKNESYRF-VKGNYVIQLGKKRF 396
EG + + + G PS ++ARR IQ G++++ EV+ + + + ++Q GK RF
Sbjct: 366 EGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQRGKDRF 425
Query: 397 MKLNIN 402
+++ ++
Sbjct: 426 VRVRLS 431
>pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
243545
pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
239629
Length = 420
Score = 129 bits (323), Expect = 8e-31
Identities = 118/410 (28%), Positives = 190/410 (45%), Gaps = 49/410 (11%)
Query: 25 IEKLVRKYYETNERFIVKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKFLIGDFTAMI 84
IE L+ K E+ + G DPTA LH+GH + L Q++G R LIG T MI
Sbjct: 24 IEDLLNK-----EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMI 78
Query: 85 GDPTGKNETRKPLNREQVLENAKTYEEQIYKILD--EKHTEVCFNS-TWLDALGAKGMIE 141
GDP+GK+E R EQV +N + +Q++ I + H V N+ WL + +
Sbjct: 79 GDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLR 138
Query: 142 LCAK-FSVARMLERDDFTKRYKENRPISIVEFLYPLLQGYD----SVAMDADIELGGNDQ 196
K V ML +D R + IS EF Y +LQ D + ++ I++GG+DQ
Sbjct: 139 DYGKHVGVNYMLGKDSIQSRLEHG--ISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQ 196
Query: 197 KFNLLVG-RFLQRAYGLNKEQSVITMPLLEGLDGVQKMSKSLGNYVGITEE---PNAMFG 252
N+ G ++R YG + +T+PL+ DG +K KS V + E P +
Sbjct: 197 WGNITSGIELMRRMYG-QTDAYGLTIPLVTKSDG-KKFGKSESGAVWLDAEKTSPYEFYQ 254
Query: 253 KIMSVSDD---LMWRYYTLLSTKTLEEIEDLKHGILNQTLHPKAVKEDLASEIVARYYDN 309
++ SD+ +Y+T L + ++ +E K N+ H + ++ LA E+ +
Sbjct: 255 FWINQSDEDVIKFLKYFTFLGKEEIDRLEQSK----NEAPHLREAQKTLAEEVTKFIHGE 310
Query: 310 DQAIKAKEQFSKVFSANLLPEILSESDFDEG-------------VGILDVLKQIGFCPST 356
D A +FS +L + LS + +G I++VL + G PS
Sbjct: 311 DALNDAIRISQALFSGDL--KSLSAKELKDGFKDVPQVTLSNDTTNIVEVLIETGISPSK 368
Query: 357 SQARRDIQGGGVKINQEVIKNESYRF-----VKGNY-VIQLGKKRFMKLN 400
QAR D+ G + IN E ++ +Y + G + +I+ GKK++ +N
Sbjct: 369 RQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRRGKKKYFMVN 418
>pdb|2TS1| Tyrosyl-Transfer RNA Synthetase (E.C.6.1.1.1)
pdb|3TS1| Tyrosyl-Transfer RNA Synthetase (E.C.6.1.1.1) Complexed With
Tyrosinyl Adenylate
Length = 419
Score = 121 bits (303), Expect = 2e-28
Identities = 112/389 (28%), Positives = 173/389 (43%), Gaps = 33/389 (8%)
Query: 37 ERFIVKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKFLIGDFTAMIGDPTGKNETRKP 96
ER + GFDPTA LH+GH I + QQ G R L+G T +IGDP+GK R
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTL 88
Query: 97 LNREQVLENAKTYEEQIYKIL----DEKHTEVCFNSTWLDALGAKGMIELCAK-FSVARM 151
+E V + +EQ+ + L D ++ N W+ L + K FSV M
Sbjct: 89 NAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYM 148
Query: 152 LERDDFTKRYKENRPISIVEFLYPLLQGYDSVAM----DADIELGGNDQKFNLLVGRFLQ 207
+ ++ R + IS EF Y +LQ YD + + +++GG+DQ N+ G L
Sbjct: 149 MAKESVQSRIETG--ISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELI 206
Query: 208 RAYGLNKEQSVITMPLLEGLDGVQKMSKSLGNYVGITEE---PNAMFGKIMSVSDDLMWR 264
R +T+PL+ DG K K+ + + +E P + ++ D + R
Sbjct: 207 RKTKGEARAFGLTIPLVTKADGT-KFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIR 265
Query: 265 YYTLLSTKTLEEIEDLKHGILNQTLHPKAVKEDLASEIVARYYDND---QAIKAKEQFSK 321
Y + + EEIE L+ L + +A ++ LA E+ + + QAI+ E
Sbjct: 266 YLKYFTFLSKEEIEALEQE-LREAPEKRAAQKTLAEEVTKLVHGEEALRQAIRISEALFS 324
Query: 322 VFSANLLPEILSESDFD------EG--VGILDVLKQIGFCPSTSQARRDIQGGGVKINQE 373
ANL + + D EG V ++++L G PS QAR DIQ G + +N E
Sbjct: 325 GDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGE 384
Query: 374 ------VIKNESYRFVKGNYVIQLGKKRF 396
I +R VI+ GKK++
Sbjct: 385 RLQDVGAILTAEHRLEGRFTVIRRGKKKY 413
>pdb|1TYA|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With
Thr 51 Replaced By Ala (T51a)
Length = 319
Score = 96.3 bits (238), Expect = 6e-21
Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 16/278 (5%)
Query: 37 ERFIVKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKFLIGDFTAMIGDPTGKNETRKP 96
ER + GFDPTA LH+GH I + QQ G R L+G T +IGDP+GK R
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAAILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTL 88
Query: 97 LNREQVLENAKTYEEQIYKIL----DEKHTEVCFNSTWLDALGAKGMIELCAK-FSVARM 151
+E V + +EQ+ + L D ++ N W+ L + K FSV M
Sbjct: 89 NAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYM 148
Query: 152 LERDDFTKRYKENRPISIVEFLYPLLQGYDSVAM----DADIELGGNDQKFNLLVGRFLQ 207
+ ++ R + IS EF Y +LQ YD + + +++GG+DQ N+ G L
Sbjct: 149 MAKESVQSRIETG--ISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELI 206
Query: 208 RAYGLNKEQSVITMPLLEGLDGVQKMSKSLGNYVGITEE---PNAMFGKIMSVSDDLMWR 264
R +T+PL+ DG K K+ + + +E P + ++ D + R
Sbjct: 207 RKTKGEARAFGLTIPLVTKADGT-KFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIR 265
Query: 265 YYTLLSTKTLEEIEDLKHGILNQTLHPKAVKEDLASEI 302
Y + + EEIE L+ L + +A ++ LA E+
Sbjct: 266 YLKYFTFLSKEEIEALEQE-LREAPEKRAAQKTLAEEV 302
>pdb|4TS1|A Chain A, Des-(Ile 318-Arg 417)-Tyrosyl-Transfer RNA Synthetase
(E.C.6.1.1.1) (Mutant With Residues 318-417 Deleted)
Complexed With Tyrosine
pdb|4TS1|B Chain B, Des-(Ile 318-Arg 417)-Tyrosyl-Transfer RNA Synthetase
(E.C.6.1.1.1) (Mutant With Residues 318-417 Deleted)
Complexed With Tyrosine
Length = 319
Score = 96.3 bits (238), Expect = 6e-21
Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 16/278 (5%)
Query: 37 ERFIVKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKFLIGDFTAMIGDPTGKNETRKP 96
ER + GFDPTA LH+GH I + QQ G R L+G T +IGDP+GK R
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTL 88
Query: 97 LNREQVLENAKTYEEQIYKIL----DEKHTEVCFNSTWLDALGAKGMIELCAK-FSVARM 151
+E V + +EQ+ + L D ++ N W+ L + K FSV M
Sbjct: 89 NAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYM 148
Query: 152 LERDDFTKRYKENRPISIVEFLYPLLQGYDSVAM----DADIELGGNDQKFNLLVGRFLQ 207
+ ++ R + IS EF Y +LQ YD + + +++GG+DQ N+ G L
Sbjct: 149 MAKESVQSRIETG--ISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELI 206
Query: 208 RAYGLNKEQSVITMPLLEGLDGVQKMSKSLGNYVGITEE---PNAMFGKIMSVSDDLMWR 264
R +T+PL+ DG K K+ + + +E P + ++ D + R
Sbjct: 207 RKTKGEARAFGLTIPLVTKADGT-KFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIR 265
Query: 265 YYTLLSTKTLEEIEDLKHGILNQTLHPKAVKEDLASEI 302
Y + + EEIE L+ L + +A ++ LA E+
Sbjct: 266 YLKYFTFLSKEEIEALEQE-LREAPEKRAAQKTLAEEV 302
>pdb|1TYD|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With
Thr 51 Replaced By Ser (T51s)
Length = 319
Score = 95.9 bits (237), Expect = 7e-21
Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 16/278 (5%)
Query: 37 ERFIVKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKFLIGDFTAMIGDPTGKNETRKP 96
ER + GFDPTA LH+GH I + QQ G R L+G T +IGDP+GK R
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLASILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTL 88
Query: 97 LNREQVLENAKTYEEQIYKIL----DEKHTEVCFNSTWLDALGAKGMIELCAK-FSVARM 151
+E V + +EQ+ + L D ++ N W+ L + K FSV M
Sbjct: 89 NAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYM 148
Query: 152 LERDDFTKRYKENRPISIVEFLYPLLQGYDSVAM----DADIELGGNDQKFNLLVGRFLQ 207
+ ++ R + IS EF Y +LQ YD + + +++GG+DQ N+ G L
Sbjct: 149 MAKESVQSRIETG--ISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELI 206
Query: 208 RAYGLNKEQSVITMPLLEGLDGVQKMSKSLGNYVGITEE---PNAMFGKIMSVSDDLMWR 264
R +T+PL+ DG K K+ + + +E P + ++ D + R
Sbjct: 207 RKTKGEARAFGLTIPLVTKADGT-KFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIR 265
Query: 265 YYTLLSTKTLEEIEDLKHGILNQTLHPKAVKEDLASEI 302
Y + + EEIE L+ L + +A ++ LA E+
Sbjct: 266 YLKYFTFLSKEEIEALEQE-LREAPEKRAAQKTLAEEV 302
>pdb|1TYC| Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With Thr 51
Replaced By Pro (T51p)
Length = 319
Score = 95.5 bits (236), Expect = 9e-21
Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 16/278 (5%)
Query: 37 ERFIVKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKFLIGDFTAMIGDPTGKNETRKP 96
ER + GFDPTA LH+GH I + QQ G R L+G T +IGDP+GK R
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAPILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTL 88
Query: 97 LNREQVLENAKTYEEQIYKIL----DEKHTEVCFNSTWLDALGAKGMIELCAK-FSVARM 151
+E V + +EQ+ + L D ++ N W+ L + K FSV M
Sbjct: 89 NAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYM 148
Query: 152 LERDDFTKRYKENRPISIVEFLYPLLQGYDSVAM----DADIELGGNDQKFNLLVGRFLQ 207
+ ++ R + IS EF Y +LQ YD + + +++GG+DQ N+ G L
Sbjct: 149 MAKESVQSRIETG--ISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELI 206
Query: 208 RAYGLNKEQSVITMPLLEGLDGVQKMSKSLGNYVGITEE---PNAMFGKIMSVSDDLMWR 264
R +T+PL+ DG K K+ + + +E P + ++ D + R
Sbjct: 207 RKTKGEARAFGLTIPLVTKADGT-KFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIR 265
Query: 265 YYTLLSTKTLEEIEDLKHGILNQTLHPKAVKEDLASEI 302
Y + + EEIE L+ L + +A ++ LA E+
Sbjct: 266 YLKYFTFLSKEEIEALEQE-LREAPEKRAAQKTLAEEV 302
>pdb|1TYB|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With
Thr 51 Replaced By Gly (T51g)
Length = 319
Score = 95.1 bits (235), Expect = 1e-20
Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 16/278 (5%)
Query: 37 ERFIVKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKFLIGDFTAMIGDPTGKNETRKP 96
ER + GFDPTA LH+GH I + QQ G R L+G T +IGDP+GK R
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAGILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTL 88
Query: 97 LNREQVLENAKTYEEQIYKIL----DEKHTEVCFNSTWLDALGAKGMIELCAK-FSVARM 151
+E V + +EQ+ + L D ++ N W+ L + K FSV M
Sbjct: 89 NAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYM 148
Query: 152 LERDDFTKRYKENRPISIVEFLYPLLQGYDSVAM----DADIELGGNDQKFNLLVGRFLQ 207
+ ++ R + IS EF Y +LQ YD + + +++GG+DQ N+ G L
Sbjct: 149 MAKESVQSRIETG--ISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELI 206
Query: 208 RAYGLNKEQSVITMPLLEGLDGVQKMSKSLGNYVGITEE---PNAMFGKIMSVSDDLMWR 264
R +T+PL+ DG K K+ + + +E P + ++ D + R
Sbjct: 207 RKTKGEARAFGLTIPLVTKADGT-KFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIR 265
Query: 265 YYTLLSTKTLEEIEDLKHGILNQTLHPKAVKEDLASEI 302
Y + + EEIE L+ L + +A ++ LA E+
Sbjct: 266 YLKYFTFLSKEEIEALEQE-LREAPEKRAAQKTLAEEV 302
>pdb|1JH3|A Chain A, Solution Structure Of Tyrosyl-Trna Synthetase C-Terminal
Domain
Length = 107
Score = 35.0 bits (79), Expect = 0.015
Identities = 21/62 (33%), Positives = 31/62 (49%), Gaps = 6/62 (9%)
Query: 341 VGILDVLKQIGFCPSTSQARRDIQGGGVKINQE------VIKNESYRFVKGNYVIQLGKK 394
V ++++L G PS QAR DIQ G + +N E I +R VI+ GKK
Sbjct: 32 VPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLEGRFTVIRRGKK 91
Query: 395 RF 396
++
Sbjct: 92 KY 93
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-
Trna Synthetase Complexed With Tryptophanyl-5'amp
Length = 328
Score = 30.4 bits (67), Expect = 0.37
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 31/157 (19%)
Query: 152 LER-DDFTKRYKENRPISIVEFLYPLLQGYDSVAMDADIELGGNDQKFNLLVGRFLQRAY 210
LER F ++ +S YP L D + + DI G DQK ++ + R L +
Sbjct: 102 LERMTQFKEKSAGKEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERF 161
Query: 211 GLNKEQSVITMP----------LLEGLDGVQKMSKSLGN---YVGITEEPNAMFGKIMSV 257
+ + T+P ++ +D +KMSKS N Y+ + ++ + KI S
Sbjct: 162 N-KRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSA 220
Query: 258 SDDL----------------MWRYYTLLSTKTLEEIE 278
D + Y+ LS +++EE+E
Sbjct: 221 VTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELE 257
>pdb|1FJG|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1HR0|D Chain D, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1JGQ|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|G Chain G, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 209
Score = 30.4 bits (67), Expect = 0.37
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 345 DVLKQIGFCPSTSQARRDIQGGGVKINQEVIKNESYRFVKGNYVIQLGKKRFMKL 399
+V+ ++GF S QAR+ ++ G + +N + SYR G+ + K R ++L
Sbjct: 103 NVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLEL 157
>pdb|1J5E|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1I94|D Chain D, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 208
Score = 30.4 bits (67), Expect = 0.37
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 345 DVLKQIGFCPSTSQARRDIQGGGVKINQEVIKNESYRFVKGNYVIQLGKKRFMKL 399
+V+ ++GF S QAR+ ++ G + +N + SYR G+ + K R ++L
Sbjct: 102 NVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLEL 156
>pdb|1IBL|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HNZ|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1FKA|D Chain D, Structure Of Functionally Activated Small Ribosomal
Subunit At 3.3 A Resolution
Length = 209
Score = 30.4 bits (67), Expect = 0.37
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 345 DVLKQIGFCPSTSQARRDIQGGGVKINQEVIKNESYRFVKGNYVIQLGKKRFMKL 399
+V+ ++GF S QAR+ ++ G + +N + SYR G+ + K R ++L
Sbjct: 103 NVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLEL 157
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 29.6 bits (65), Expect = 0.64
Identities = 32/134 (23%), Positives = 56/134 (40%), Gaps = 30/134 (22%)
Query: 174 YPLLQGYDSVAMDADIELGGNDQKFNLLVGRFLQRAYGLNKEQSVITMP----------L 223
YP L D + + DI G DQK ++ + R L + + + T+P +
Sbjct: 125 YPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN-KRYGELFTIPEARIPKVGARI 183
Query: 224 LEGLDGVQKMSKSLGN---YVGITEEPNAMFGKIMSVSDDL----------------MWR 264
+ +D +KMSKS N Y+ + ++ + KI S D +
Sbjct: 184 MSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISNLLN 243
Query: 265 YYTLLSTKTLEEIE 278
Y+ LS +++EE+E
Sbjct: 244 IYSTLSGQSIEELE 257
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 28.5 bits (62), Expect = 1.4
Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 223 LLEGLDGVQKMSKSLGN---------------YVGITEEPNAMFGKIMSVSDDLMWRYYT 267
L EG G +M K+LG+ + +TEE A+F + +S D W
Sbjct: 119 LFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW---- 174
Query: 268 LLSTKTLEEIEDLKHGILNQTLHPKAVKEDLASEIVAR 305
LL + ++++++ + L + + ++ ++++A+
Sbjct: 175 LLEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAK 212
>pdb|1I4X|A Chain A, Staphylococcal Enterotoxin C2, Monoclinic Form
Crystallized At Ph 8.0
pdb|1SE2| Staphylococcal Enterotoxin C2, Monoclinic Form
pdb|1I4P|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 5.5
pdb|1I4R|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 6.5
pdb|1I4Q|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 6.0
pdb|1STE| Staphylococcal Enterotoxin C2 From Staphylococcus Aureus
pdb|1CQV|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 5.0
Length = 239
Score = 27.7 bits (60), Expect = 2.4
Identities = 21/88 (23%), Positives = 40/88 (44%), Gaps = 1/88 (1%)
Query: 222 PLLEGLDGVQKMSKSLGNYVGITEEPNAMFGKIMSVSDDLMWRYYTLLSTKTLEEIEDLK 281
P + L + + ++GN + ++ K+MSV L +S K L+ + +K
Sbjct: 6 PTPDELHKSSEFTGTMGNMKYLYDDHYVSATKVMSVDKFLAHDLIYNISDKKLKNYDKVK 65
Query: 282 HGILNQTLHPKAVKEDLASEIVARYYDN 309
+LN+ L K K+++ + YY N
Sbjct: 66 TELLNEDL-AKKYKDEVVDVYGSNYYVN 92
>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
Length = 379
Score = 26.9 bits (58), Expect = 4.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 82 AMIGDPTGKNETRKPLNREQVLENAKTYEE--QIYKILDEKHTEVCF-----NSTWLDA 133
+M G P T + +++ L+ A Y+ ++Y+ L +K + V F N TWLD+
Sbjct: 269 SMYGWPPRAYPTYDAIPKQKFLDQAARYDRLFKLYEKLSDKISNVTFWGIADNHTWLDS 327
>pdb|1J91|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1J91|B Chain B, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1JAM|A Chain A, Crystal Structure Of Apo-Form Of Z. Mays Ck2 Protein
Kinase Alpha Subunit
pdb|1LP4|A Chain A, Crystal Structure Of A Binary Complex Of The Catalytic
Subunit Of Protein Kinase Ck2 With Mg-Amppnp
pdb|1LPU|A Chain A, Low Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1LR4|A Chain A, Room Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1F0Q|A Chain A, Crystal Structure Of The Alpha Subunit Of Protein Kinase
Ck2 In Complex With The Nucleotide Competitive Inhibitor
Emodin
pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|B Chain B, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|C Chain C, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme.
pdb|1DS5|D Chain D, Dimeric Crystal Structure Of The Alpha Subunit In Complex
With Two Beta Peptides Mimicking The Architecture Of The
Tetrameric Protein Kinase Ck2 Holoenzyme
Length = 332
Score = 26.9 bits (58), Expect = 4.1
Identities = 13/42 (30%), Positives = 23/42 (53%)
Query: 335 SDFDEGVGILDVLKQIGFCPSTSQARRDIQGGGVKINQEVIK 376
+D+D I ++LK + +C S RD++ V I+ E+ K
Sbjct: 124 TDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 165
>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Amppnp
pdb|1DAY|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Gmppnp
Length = 327
Score = 26.9 bits (58), Expect = 4.1
Identities = 13/42 (30%), Positives = 23/42 (53%)
Query: 335 SDFDEGVGILDVLKQIGFCPSTSQARRDIQGGGVKINQEVIK 376
+D+D I ++LK + +C S RD++ V I+ E+ K
Sbjct: 123 TDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 164
>pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-
Trna Synthetase Complexed With Tryptophanyl-5'amp
pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-
Trna Synthetase Complexed With Tryptophanyl-5'amp
Length = 328
Score = 26.6 bits (57), Expect = 5.4
Identities = 36/157 (22%), Positives = 62/157 (38%), Gaps = 31/157 (19%)
Query: 152 LERD-DFTKRYKENRPISIVEFLYPLLQGYDSVAMDADIELGGNDQKFNLLVGRFLQRAY 210
LER F ++ +S YP L D + + DI G DQK ++ + R L +
Sbjct: 102 LERXTQFKEKSAGKEAVSAGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERF 161
Query: 211 GLNKEQSVITMP----------LLEGLDGVQKMSKSLGN---YVGITEEPNAMFGKIMSV 257
+ + T+P + +D +K SKS N Y+ + ++ + KI S
Sbjct: 162 N-KRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSA 220
Query: 258 SDDL----------------MWRYYTLLSTKTLEEIE 278
D + Y+ LS +++EE+E
Sbjct: 221 VTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELE 257
>pdb|1BS0|A Chain A, Plp-Dependent Acyl-Coa Synthase
Length = 384
Score = 26.2 bits (56), Expect = 7.0
Identities = 14/63 (22%), Positives = 31/63 (48%)
Query: 16 TNEIIGLEYIEKLVRKYYETNERFIVKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKF 75
+N+ +GL + +++R + + E+F + +G + H L ++LA Y + F
Sbjct: 46 SNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLF 105
Query: 76 LIG 78
+ G
Sbjct: 106 ISG 108
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 26.2 bits (56), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (60%), Gaps = 2/31 (6%)
Query: 268 LLSTKTLEEIEDLKHGILNQTLHPKAVKEDL 298
LL+ TL+ E L HG+L + HP+ + DL
Sbjct: 241 LLANATLKSYEGLPHGML--STHPEVLNPDL 269
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 26.2 bits (56), Expect = 7.0
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 277 IEDLKHGILNQTLHPKAVKEDLASEIVARYYD---NDQAIKAKEQF-----SKVFSA--- 325
++D G+ + L + ++L + + R +D +D+ + +F K F +
Sbjct: 37 LDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNG 96
Query: 326 NLLPEILSESDFDEGVGILDVLKQIGFCPSTSQARRDIQGGGVKINQ 372
+L PEI+ F +LK +GFC S + RD++ + IN+
Sbjct: 97 DLDPEIVKSFLFQ-------LLKGLGFCHSRNVLHRDLKPQNLLINR 136
>pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form Of 8-Amino-7-
Oxonanoate Synthase
pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or 7-
Keto-8aminipelargonate Or Kapa Synthase) Complexed With
Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or Kapa).
The Enzyme Of Biotin Biosynthetic Pathway
Length = 384
Score = 26.2 bits (56), Expect = 7.0
Identities = 14/63 (22%), Positives = 31/63 (48%)
Query: 16 TNEIIGLEYIEKLVRKYYETNERFIVKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKF 75
+N+ +GL + +++R + + E+F + +G + H L ++LA Y + F
Sbjct: 46 SNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLF 105
Query: 76 LIG 78
+ G
Sbjct: 106 ISG 108
>pdb|1KSK|A Chain A, Structure Of Rsua
pdb|1KSL|A Chain A, Structure Of Rsua
pdb|1KSV|A Chain A, Structure Of Rsua
Length = 234
Score = 26.2 bits (56), Expect = 7.0
Identities = 16/62 (25%), Positives = 33/62 (52%), Gaps = 9/62 (14%)
Query: 346 VLKQIGFCPSTSQARRDIQGGGVKINQEVIKNESYRFV-------KGNYVIQLGKKRFMK 398
+ +Q+G S + A R+I+G V ++ E+++N +++ + GN + Q R+
Sbjct: 10 IAQQLGV--SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFX 67
Query: 399 LN 400
LN
Sbjct: 68 LN 69
>pdb|1IHN|B Chain B, Mt938
pdb|1IHN|A Chain A, Mt938
Length = 113
Score = 25.8 bits (55), Expect = 9.2
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 7/72 (9%)
Query: 94 RKPLNREQVLENAKTYEEQIYKILDEKHTEVCFNSTWLDALGAKGMIELCAKFSVARMLE 153
RK ++R + + EE++ ++L+EK + S G G +E + S A +L
Sbjct: 35 RKEISRRKYGTSHVXAEEELEELLEEKPESIIIGS------GVHGALETGFR-SDATVLP 87
Query: 154 RDDFTKRYKENR 165
+ KRY E R
Sbjct: 88 TCEAIKRYNEER 99
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,294,540
Number of Sequences: 13198
Number of extensions: 96075
Number of successful extensions: 439
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 26
length of query: 402
length of database: 2,899,336
effective HSP length: 90
effective length of query: 312
effective length of database: 1,711,516
effective search space: 533992992
effective search space used: 533992992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)