BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645395|ref|NP_207569.1| hypothetical protein
[Helicobacter pylori 26695]
         (84 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1YFM|    Recombinant Yeast Fumarase                            26  0.87
pdb|1A0E|A  Chain A, Xylose Isomerase From Thermotoga Neapol...    23  4.3
pdb|1DF0|A  Chain A, Crystal Structure Of M-Calpain                23  7.4
pdb|1AD6|    Domain A Of Human Retinoblastoma Tumor Suppressor     22  9.6
pdb|1GUX|A  Chain A, Rb Pocket Bound To E7 Lxcxe Motif             22  9.6

>pdb|1YFM|   Recombinant Yeast Fumarase
          Length = 488

 Score = 25.8 bits (55), Expect = 0.87
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 50  KTLVNMDPKRHKLVDIAIREIAEGKID 76
           ++L  +DPK  K +  A  E+A GK+D
Sbjct: 86  ESLGGLDPKISKAIQQAADEVASGKLD 112



>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
 pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
          Length = 443

 Score = 23.5 bits (49), Expect = 4.3
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 68  REIAEGKIDIDRIDE 82
           R+I EGK+D ++++E
Sbjct: 395 RDIVEGKVDFEKLEE 409



>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
          Length = 700

 Score = 22.7 bits (47), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (45%)

Query: 44  QLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDRIDE 82
           +L  G   LV    + HK  D  IR  +E K D   +D+
Sbjct: 476 KLPPGEYVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDD 514



>pdb|1AD6|   Domain A Of Human Retinoblastoma Tumor Suppressor
          Length = 185

 Score = 22.3 bits (46), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (49%)

Query: 13 KERTESLVAQALKNIGNDRYMLDNLVFARVKQ 44
          KE+    V Q    IG+ RY L   ++ RV +
Sbjct: 50 KEKFAKAVGQGCVEIGSQRYKLGVRLYYRVME 81



>pdb|1GUX|A Chain A, Rb Pocket Bound To E7 Lxcxe Motif
          Length = 218

 Score = 22.3 bits (46), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (49%)

Query: 13 KERTESLVAQALKNIGNDRYMLDNLVFARVKQ 44
          KE+    V Q    IG+ RY L   ++ RV +
Sbjct: 56 KEKFAKAVGQGCVEIGSQRYKLGVRLYYRVME 87



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.318    0.135    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,524
Number of Sequences: 13198
Number of extensions: 11945
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 5
length of query: 84
length of database: 2,899,336
effective HSP length: 60
effective length of query: 24
effective length of database: 2,107,456
effective search space: 50578944
effective search space used: 50578944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)