BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645397|ref|NP_207571.1| hypothetical protein
[Helicobacter pylori 26695]
(227 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GCX|A Chain A, Crystal Structure Of Family B Dna Polym... 26 3.3
pdb|1EQO|A Chain A, Crystal Structure Of A Ternary Complex ... 25 5.7
pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From... 25 5.7
pdb|1COY| Cholesterol Oxidase (E.C.1.1.3.6) Complex With ... 25 7.4
>pdb|1GCX|A Chain A, Crystal Structure Of Family B Dna Polymerase From
Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
Length = 774
Score = 26.2 bits (56), Expect = 3.3
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 106 LKGEVLIGNKALQFYYSNPKKDFIDLAALWYEKKRLPFVFGRLCYYQNKDFYKRLSLAFK 165
LKG IG++A+ F +P K D A + E + LP V +R+ AF
Sbjct: 704 LKGSGRIGDRAIPFDEFDPTKHKYD-AEYYIENQVLPAV-------------ERILRAFG 749
Query: 166 HQKTKIPYYILKEAALKTNLK 186
++K + Y ++ L LK
Sbjct: 750 YRKEDLRYQKTRQVGLSAWLK 770
>pdb|1EQO|A Chain A, Crystal Structure Of A Ternary Complex Of
6-Hydroxymethyl-7, 8-Dihydropterin Pyrophosphokinase
From E. Coli With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1EQM|A Chain A, Crystal Structure Of Binary Complex Of
6-Hydroxymethyl-7,8- Dihydropterin Pyrophosphokinase
With Adenosine-5'- Diphosphate
pdb|1HKA| 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase
pdb|1EX8|A Chain A, Crystal Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Hp4a, The
Two-Substrate- Mimicking Inhibitor
pdb|1DY3|A Chain A, Ternary Complex Of
7,8-Dihydro-6-Hydroxymethylpterinpyrophosphokinase From
Escherichia Coli With Atp And A Substrate Analogue.
pdb|1EQ0|A Chain A, Solution Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Mgamppcp
Length = 158
Score = 25.4 bits (54), Expect = 5.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 172 PYYILKEAALKTNLKRQDILNYLQKIYYTLGK 203
P Y+ AL+T+L +++LN+ Q+I G+
Sbjct: 51 PDYLNAAVALETSLAPEELLNHTQRIELQQGR 82
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 25.4 bits (54), Expect = 5.7
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 106 LKGEVLIGNKALQFYYSNPKKDFIDLAALWYEKKRLPFVFGRLCYYQNKDFYKRLSLAFK 165
LKG IG++A+ F +P K D A + E + LP V +R+ AF
Sbjct: 704 LKGSGRIGDRAIPFDEFDPAKHKYD-AEYYIENQVLPAV-------------ERILRAFG 749
Query: 166 HQKTKIPYYILKEAALKTNLK 186
++K + Y ++ L LK
Sbjct: 750 YRKEDLRYQKTRQVGLGAWLK 770
>pdb|1COY| Cholesterol Oxidase (E.C.1.1.3.6) Complex With
3-Beta-Hydroxy-5-Androsten-17-One
(Dehydroisoandrosterone)
pdb|3COX| Cholesterol Oxidase (E.C.1.1.3.6)
Length = 507
Score = 25.0 bits (53), Expect = 7.4
Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 22 PTPCYFKQFL------RLKKTYPSKLNESFLFRRIDAGFISSIAGYPFALHSHSLGIVAY 75
P YF++ L + Y + N ID + S Y FA A
Sbjct: 126 PKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRK---TAQ 182
Query: 76 KEVLSVLVVDTKNAFDKESASSNALSQAL--GLKGEVLIGNKA 116
+ + V N +D E A Q GL GEV+ GN A
Sbjct: 183 RSGFTTAFVP--NVYDFEYMKKEAAGQVTKSGLGGEVIYGNNA 223
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.142 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,267,744
Number of Sequences: 13198
Number of extensions: 48756
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 4
length of query: 227
length of database: 2,899,336
effective HSP length: 85
effective length of query: 142
effective length of database: 1,777,506
effective search space: 252405852
effective search space used: 252405852
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)