BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645398|ref|NP_207572.1| aconitase B (acnB)
[Helicobacter pylori 26695]
(853 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase ... 1023 0.0
pdb|1NIS| Aconitase (E.C.4.2.1.3) Complex With Nitrocitra... 52 4e-07
pdb|8ACN| Aconitase (E.C.4.2.1.3) Complex With Nitroisoci... 52 4e-07
pdb|1AMJ| Aconitase (E.C.4.2.1.3) Complexed With Sulfate ... 52 4e-07
pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase >... 51 6e-07
pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Iso... 51 6e-07
pdb|5ACN| Aconitase (E.C.4.2.1.3) (Inactive (3fe-4s) Clus... 51 6e-07
pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase 51 6e-07
pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex 51 6e-07
pdb|1QQP|2 Chain 2, Foot-And-Mouth Disease Virus OLIGOSACCH... 29 2.5
pdb|1D9Y|A Chain A, Neisseria Gonorrhoeae Ferric Binding Pr... 28 5.6
pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase... 28 5.6
pdb|1MPB| Maltodextrin-Binding Protein (Maltose-Binding P... 27 7.3
pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 ... 27 7.3
pdb|1IUD| Maltodextrin-Binding Protein InsertionDELETION ... 27 7.3
pdb|1EFV|A Chain A, Three-Dimensional Structure Of Human El... 27 7.3
pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Pro... 27 7.3
pdb|1HTP| H-Protein (E.C.1.4.4.2) Complexed With Lipoic A... 27 7.3
pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein ... 27 7.3
pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Op... 27 7.3
pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose... 27 7.3
pdb|1MDP|1 Chain 1, Maltodextrin-Binding Protein (Male178 M... 27 7.3
pdb|1THF|D Chain D, Cyclase Subunit Of Imidazoleglycerolpho... 27 7.3
pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure >gi|14488507|... 27 7.3
pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding P... 27 7.3
pdb|1GPW|C Chain C, Structural Evidence For Ammonia Tunneli... 27 7.3
pdb|1GOS|A Chain A, Human Monoamine Oxidase B >gi|17942912|... 27 9.5
pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylaceto... 27 9.5
pdb|1HYO|B Chain B, Crystal Structure Of Fumarylacetoacetat... 27 9.5
pdb|1QCO|B Chain B, Crystal Structure Of Fumarylacetoacetat... 27 9.5
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 1023 bits (2645), Expect = 0.0
Identities = 526/862 (61%), Positives = 653/862 (75%), Gaps = 27/862 (3%)
Query: 6 LEDYKKSVSERGSEGIPPLPLNAKQVQAVVEILTKDPTNAA-FAKELLIHRVSPGVDEGA 64
LE+Y+K V+ER +EGI P PL+A Q+ A+VE+L P F +LL +RV PGVDE A
Sbjct: 2 LEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEAA 61
Query: 65 KVKAEFLAKLSQKKLECVHISALEATTLLGTMLGGYNVEPLIMGLESQDKNIAKESAKAL 124
VKA FLA +++ + + ++ +A LLGTM GGYN+ PLI L+ D +A +AKAL
Sbjct: 62 YVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALD--DAKLAPIAAKAL 119
Query: 125 KTTLLVYGSFDKIAAMSKT-NALAKEVLESWANAEWFLNKEPLNECIEACVFKIDGETNT 183
TLL++ +F + +K N AK+V++SWA+AEWFLN+ L E + VFK+ GETNT
Sbjct: 120 SHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNT 179
Query: 184 DDLSPASDAFTRSDIPLHAKAMLKNRIENYE----------QRIKAIKTKGVPVAYVGDV 233
DDLSPA DA++R DIPLHA AMLKN E E ++I+A++ KG P+AYVGDV
Sbjct: 180 DDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDV 239
Query: 234 VGTGSSRKSATNSIMWHFGKDIPFVPNKRSGGIVIGGVIAPIFFATCEDSGALPIVADVK 293
VGTGSSRKSATNS++W G DIP VPNKR GG+ +GG IAPIFF T ED+GALPI DV
Sbjct: 240 VGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVS 299
Query: 294 DLKEGDLIKIYPYKGEITLND--KVVSTFKLEPETLLDEVRASGRIPLIIGRGLTNKARK 351
+L GD+I +YPYKGE+ ++ ++++TF+L+ + L+DEVRA GRIPLIIGRGLT KAR+
Sbjct: 300 NLNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKARE 359
Query: 352 FLGLGESEAFKKPSAPKSDAKGYTLAQKIVGHACGVKGILPGTYCEPKVTTVGSQDTTGA 411
LGL S+ F++ +G++LAQK+VG ACGVKGI PG YCEPK+T+VGSQDTTG
Sbjct: 360 ALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGP 419
Query: 412 MTRDEVKELASLKFDAPFVLQSFCHTAAYPKPSDVSLHATLPGFITQRGGVALHPGDGVI 471
MTRDE+K+LA L F A V+QSFCHTAAYPKP DV+ H TLP FI RGGV+L PGDGVI
Sbjct: 420 MTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVI 479
Query: 472 HTWLNRMGLPDTLGTGGDSHTRFPLGISFPAGSGLVAFAAVTGTMPLNMPESVLVRFKGE 531
H+WLNRM LPDT+GTGGDSHTRFP+GISFPAGSGLVAFAA TG MPL+MPESVLVRFKG+
Sbjct: 480 HSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGK 539
Query: 532 MNPGITLRDLVNAIPYYAIKKGLLTVEKKGKINVFNGRILEIEGLPDIKMEQAFELSDAS 591
M PGITLRDLV+AIP YAIK+GLLTVEKKGK N+F+GRILEIEGLPD+K+EQAFEL+DAS
Sbjct: 540 MQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDAS 599
Query: 592 AERSAAACVVRLNKEPMIEYLKSNIKLIDEMIASGYEDKETLKKRRDAMQAWVDNPVLLE 651
AERSAA C ++LNKEP+IEYL SNI L+ MIA GY D+ TL++R M+ W+ NP LLE
Sbjct: 600 AERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLE 659
Query: 652 PDSNAQYAAVIEIDVAEITEPILACPNDPDDVATLSEVLADTTGKRPHAIDEVFIGSCMT 711
D++A+YAAVI+ID+A+I EPIL PNDPDD LS V + IDEVFIGSCMT
Sbjct: 660 ADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGE-------KIDEVFIGSCMT 712
Query: 712 NIGHFRAFGEIVKNAPPSQ--ARLWVVPPSKMDEQELINEGYYAIFGAAGARTEVPGCSL 769
NIGHFRA G+++ +A Q RLWV PP++MD +L EGYY++FG +GAR E+PGCSL
Sbjct: 713 NIGHFRAAGKLL-DAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSL 771
Query: 770 CMGNQARVRDNAVVFSTSTRNFDNRMGRGAKVYLGSAELGAACALLGRIPTKEEYMNLVS 829
CMGNQARV D A V STSTRNF NR+G GA V+L SAEL A AL+G++PT EEY V+
Sbjct: 772 CMGNQARVADGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVA 831
Query: 830 EKLESQKDKIYRYMNFNLMENF 851
+ ++ D YRY+NFN + +
Sbjct: 832 QVDKTAVD-TYRYLNFNQLSQY 852
>pdb|1NIS| Aconitase (E.C.4.2.1.3) Complex With Nitrocitrate (Major Occupancy
Form)
pdb|1NIT| Aconitase (E.C.4.2.1.3) Complex With Sulfate (Minor Occupancy
Form)
Length = 754
Score = 51.6 bits (122), Expect = 4e-07
Identities = 85/376 (22%), Positives = 146/376 (38%), Gaps = 51/376 (13%)
Query: 466 PGDGVIHTW-LNRMGLPDTLGTGGDSHTRFPLGIS-FPAGSGLVAFAAVTGTMP--LNMP 521
PG G+IH L P L G DSHT G+ G G V +P L P
Sbjct: 141 PGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCP 200
Query: 522 ESVLVRFKGEMNPGITLRDLVNAIPYYAIKKGLLTVEK-KGKINVFNGRILEIEGLPDIK 580
+ + V+ G ++ + +D++ + G+LTV+ G I ++G G+ I
Sbjct: 201 KVIGVKLTGSLSGWTSPKDVILKVA------GILTVKGGTGAIVEYHG-----PGVDSIS 249
Query: 581 MEQAFELSDASAERSAAACVVRLNKEPMIEYLKSNIKLIDEMIASGYEDKETLKKRRDAM 640
+ + AE A V N M +YL + +A ++D
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHR-MKKYLSKTGRADIANLADEFKDH---------- 298
Query: 641 QAWVDNPVLLEPDSNAQYAAVIEIDVAEITEPILACPNDPDDVATLSEV--LADTTGKRP 698
L PDS Y +IEI+++E+ +P + P PD ++EV +A+ G P
Sbjct: 299 ---------LVPDSGCHYDQLIEINLSEL-KPHINGPFTPDLAHPVAEVGSVAEKEG-WP 347
Query: 699 HAIDEVFIGSCMT----NIGHFRAFG-EIVKNAPPSQARLWVVPPSKMDEQELINEGYYA 753
I IGSC ++G A + + + +++ + P S+ + +GY
Sbjct: 348 LDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ 407
Query: 754 IFGAAGARTEVPGCSLCMG----NQARVRDNAVVFSTSTRNFDNRMGRGAK--VYLGSAE 807
+ G C C+G + + + ++ RNF R + ++ S E
Sbjct: 408 VLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPE 467
Query: 808 LGAACALLGRIPTKEE 823
+ A A+ G + E
Sbjct: 468 IVTALAIAGTLKFNPE 483
>pdb|8ACN| Aconitase (E.C.4.2.1.3) Complex With Nitroisocitrate
pdb|1ACO| Aconitase (Mitochondrial) (E.C.4.2.1.3) Complex With
Transaconitate
pdb|1FGH| Complex With 4-Hydroxy-Trans-Aconitate
Length = 754
Score = 51.6 bits (122), Expect = 4e-07
Identities = 85/376 (22%), Positives = 146/376 (38%), Gaps = 51/376 (13%)
Query: 466 PGDGVIHTW-LNRMGLPDTLGTGGDSHTRFPLGIS-FPAGSGLVAFAAVTGTMP--LNMP 521
PG G+IH L P L G DSHT G+ G G V +P L P
Sbjct: 141 PGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCP 200
Query: 522 ESVLVRFKGEMNPGITLRDLVNAIPYYAIKKGLLTVEK-KGKINVFNGRILEIEGLPDIK 580
+ + V+ G ++ + +D++ + G+LTV+ G I ++G G+ I
Sbjct: 201 KVIGVKLTGSLSGWTSPKDVILKVA------GILTVKGGTGAIVEYHG-----PGVDSIS 249
Query: 581 MEQAFELSDASAERSAAACVVRLNKEPMIEYLKSNIKLIDEMIASGYEDKETLKKRRDAM 640
+ + AE A V N M +YL + +A ++D
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHR-MKKYLSKTGRADIANLADEFKDH---------- 298
Query: 641 QAWVDNPVLLEPDSNAQYAAVIEIDVAEITEPILACPNDPDDVATLSEV--LADTTGKRP 698
L PDS Y +IEI+++E+ +P + P PD ++EV +A+ G P
Sbjct: 299 ---------LVPDSGCHYDQLIEINLSEL-KPHINGPFTPDLAHPVAEVGSVAEKEG-WP 347
Query: 699 HAIDEVFIGSCMT----NIGHFRAFG-EIVKNAPPSQARLWVVPPSKMDEQELINEGYYA 753
I IGSC ++G A + + + +++ + P S+ + +GY
Sbjct: 348 LDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ 407
Query: 754 IFGAAGARTEVPGCSLCMG----NQARVRDNAVVFSTSTRNFDNRMGRGAK--VYLGSAE 807
+ G C C+G + + + ++ RNF R + ++ S E
Sbjct: 408 VLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPE 467
Query: 808 LGAACALLGRIPTKEE 823
+ A A+ G + E
Sbjct: 468 IVTALAIAGTLKFNPE 483
>pdb|1AMJ| Aconitase (E.C.4.2.1.3) Complexed With Sulfate And Hydroxide
pdb|1AMI| Aconitase (E.C.4.2.1.3) Complexed With Alpha-Methyl-Isocitrate
Length = 754
Score = 51.6 bits (122), Expect = 4e-07
Identities = 85/376 (22%), Positives = 146/376 (38%), Gaps = 51/376 (13%)
Query: 466 PGDGVIHTW-LNRMGLPDTLGTGGDSHTRFPLGIS-FPAGSGLVAFAAVTGTMP--LNMP 521
PG G+IH L P L G DSHT G+ G G V +P L P
Sbjct: 141 PGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCP 200
Query: 522 ESVLVRFKGEMNPGITLRDLVNAIPYYAIKKGLLTVEK-KGKINVFNGRILEIEGLPDIK 580
+ + V+ G ++ + +D++ + G+LTV+ G I ++G G+ I
Sbjct: 201 KVIGVKLTGSLSGWTSPKDVILKVA------GILTVKGGTGAIVEYHG-----PGVDSIS 249
Query: 581 MEQAFELSDASAERSAAACVVRLNKEPMIEYLKSNIKLIDEMIASGYEDKETLKKRRDAM 640
+ + AE A V N M +YL + +A ++D
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHR-MKKYLSKTGRADIANLADEFKDH---------- 298
Query: 641 QAWVDNPVLLEPDSNAQYAAVIEIDVAEITEPILACPNDPDDVATLSEV--LADTTGKRP 698
L PDS Y +IEI+++E+ +P + P PD ++EV +A+ G P
Sbjct: 299 ---------LVPDSGCHYDQLIEINLSEL-KPHINGPFTPDLAHPVAEVGSVAEKEG-WP 347
Query: 699 HAIDEVFIGSCMT----NIGHFRAFG-EIVKNAPPSQARLWVVPPSKMDEQELINEGYYA 753
I IGSC ++G A + + + +++ + P S+ + +GY
Sbjct: 348 LDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ 407
Query: 754 IFGAAGARTEVPGCSLCMG----NQARVRDNAVVFSTSTRNFDNRMGRGAK--VYLGSAE 807
+ G C C+G + + + ++ RNF R + ++ S E
Sbjct: 408 VLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPE 467
Query: 808 LGAACALLGRIPTKEE 823
+ A A+ G + E
Sbjct: 468 IVTALAIAGTLKFNPE 483
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 50.8 bits (120), Expect = 6e-07
Identities = 85/376 (22%), Positives = 145/376 (37%), Gaps = 51/376 (13%)
Query: 466 PGDGVIHTW-LNRMGLPDTLGTGGDSHTRFPLGIS-FPAGSGLVAFAAVTGTMP--LNMP 521
PG G+IH L P L G DSHT G+ G G V +P L P
Sbjct: 140 PGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCP 199
Query: 522 ESVLVRFKGEMNPGITLRDLVNAIPYYAIKKGLLTVEK-KGKINVFNGRILEIEGLPDIK 580
+ + V+ G ++ + +D++ + G+LTV+ G I ++G G+ I
Sbjct: 200 KVIGVKLTGSLSGWTSPKDVILKVA------GILTVKGGTGAIVEYHG-----PGVDSIS 248
Query: 581 MEQAFELSDASAERSAAACVVRLNKEPMIEYLKSNIKLIDEMIASGYEDKETLKKRRDAM 640
+ + AE A V N M +YL + +A ++D
Sbjct: 249 CTGMATICNMGAEIGATTSVFPYNHR-MKKYLSKTGRADIANLADEFKDH---------- 297
Query: 641 QAWVDNPVLLEPDSNAQYAAVIEIDVAEITEPILACPNDPDDVATLSEV--LADTTGKRP 698
L PD Y VIEI+++E+ +P + P PD ++EV +A+ G P
Sbjct: 298 ---------LVPDPGCHYDQVIEINLSEL-KPHINGPFTPDLAHPVAEVGSVAEKEG-WP 346
Query: 699 HAIDEVFIGSCMT----NIGHFRAFG-EIVKNAPPSQARLWVVPPSKMDEQELINEGYYA 753
I IGSC ++G A + + + +++ + P S+ + +GY
Sbjct: 347 LDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ 406
Query: 754 IFGAAGARTEVPGCSLCMG----NQARVRDNAVVFSTSTRNFDNRMGRGAK--VYLGSAE 807
+ G C C+G + + + ++ RNF R + ++ S E
Sbjct: 407 VLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPE 466
Query: 808 LGAACALLGRIPTKEE 823
+ A A+ G + E
Sbjct: 467 IVTALAIAGTLKFNPE 482
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 50.8 bits (120), Expect = 6e-07
Identities = 85/376 (22%), Positives = 145/376 (37%), Gaps = 51/376 (13%)
Query: 466 PGDGVIHTW-LNRMGLPDTLGTGGDSHTRFPLGIS-FPAGSGLVAFAAVTGTMP--LNMP 521
PG G+IH L P L G DSHT G+ G G V +P L P
Sbjct: 141 PGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCP 200
Query: 522 ESVLVRFKGEMNPGITLRDLVNAIPYYAIKKGLLTVEK-KGKINVFNGRILEIEGLPDIK 580
+ + V+ G ++ + +D++ + G+LTV+ G I ++G G+ I
Sbjct: 201 KVIGVKLTGSLSGWTSPKDVILKVA------GILTVKGGTGAIVEYHG-----PGVDSIS 249
Query: 581 MEQAFELSDASAERSAAACVVRLNKEPMIEYLKSNIKLIDEMIASGYEDKETLKKRRDAM 640
+ + AE A V N M +YL + +A ++D
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHR-MKKYLSKTGRADIANLADEFKDH---------- 298
Query: 641 QAWVDNPVLLEPDSNAQYAAVIEIDVAEITEPILACPNDPDDVATLSEV--LADTTGKRP 698
L PD Y VIEI+++E+ +P + P PD ++EV +A+ G P
Sbjct: 299 ---------LVPDPGCHYDQVIEINLSEL-KPHINGPFTPDLAHPVAEVGSVAEKEG-WP 347
Query: 699 HAIDEVFIGSCMT----NIGHFRAFG-EIVKNAPPSQARLWVVPPSKMDEQELINEGYYA 753
I IGSC ++G A + + + +++ + P S+ + +GY
Sbjct: 348 LDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ 407
Query: 754 IFGAAGARTEVPGCSLCMG----NQARVRDNAVVFSTSTRNFDNRMGRGAK--VYLGSAE 807
+ G C C+G + + + ++ RNF R + ++ S E
Sbjct: 408 VLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPE 467
Query: 808 LGAACALLGRIPTKEE 823
+ A A+ G + E
Sbjct: 468 IVTALAIAGTLKFNPE 483
>pdb|5ACN| Aconitase (E.C.4.2.1.3) (Inactive (3fe-4s) Cluster Form)
pdb|6ACN| Aconitase (E.C.4.2.1.3) (Activated (4fe-4s) Cluster Form)
pdb|7ACN| Aconitase (E.C.4.2.1.3) Complex With Isocitrate
Length = 754
Score = 50.8 bits (120), Expect = 6e-07
Identities = 85/376 (22%), Positives = 145/376 (37%), Gaps = 51/376 (13%)
Query: 466 PGDGVIHTW-LNRMGLPDTLGTGGDSHTRFPLGIS-FPAGSGLVAFAAVTGTMP--LNMP 521
PG G+IH L P L G DSHT G+ G G V +P L P
Sbjct: 141 PGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCP 200
Query: 522 ESVLVRFKGEMNPGITLRDLVNAIPYYAIKKGLLTVEK-KGKINVFNGRILEIEGLPDIK 580
+ + V+ G ++ + +D++ + G+LTV+ G I ++G G+ I
Sbjct: 201 KVIGVKLTGSLSGWTSPKDVILKVA------GILTVKGGTGAIVEYHG-----PGVDSIS 249
Query: 581 MEQAFELSDASAERSAAACVVRLNKEPMIEYLKSNIKLIDEMIASGYEDKETLKKRRDAM 640
+ + AE A V N M +YL + +A ++D
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHR-MKKYLSKTGRADIANLADEFKDH---------- 298
Query: 641 QAWVDNPVLLEPDSNAQYAAVIEIDVAEITEPILACPNDPDDVATLSEV--LADTTGKRP 698
L PD Y VIEI+++E+ +P + P PD ++EV +A+ G P
Sbjct: 299 ---------LVPDPGCHYDQVIEINLSEL-KPHINGPFTPDLAHPVAEVGSVAEKEG-WP 347
Query: 699 HAIDEVFIGSCMT----NIGHFRAFG-EIVKNAPPSQARLWVVPPSKMDEQELINEGYYA 753
I IGSC ++G A + + + +++ + P S+ + +GY
Sbjct: 348 LDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ 407
Query: 754 IFGAAGARTEVPGCSLCMG----NQARVRDNAVVFSTSTRNFDNRMGRGAK--VYLGSAE 807
+ G C C+G + + + ++ RNF R + ++ S E
Sbjct: 408 VLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPE 467
Query: 808 LGAACALLGRIPTKEE 823
+ A A+ G + E
Sbjct: 468 IVTALAIAGTLKFNPE 483
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 50.8 bits (120), Expect = 6e-07
Identities = 85/376 (22%), Positives = 145/376 (37%), Gaps = 51/376 (13%)
Query: 466 PGDGVIHTW-LNRMGLPDTLGTGGDSHTRFPLGIS-FPAGSGLVAFAAVTGTMP--LNMP 521
PG G+IH L P L G DSHT G+ G G V +P L P
Sbjct: 140 PGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCP 199
Query: 522 ESVLVRFKGEMNPGITLRDLVNAIPYYAIKKGLLTVEK-KGKINVFNGRILEIEGLPDIK 580
+ + V+ G ++ + +D++ + G+LTV+ G I ++G G+ I
Sbjct: 200 KVIGVKLTGSLSGWTSPKDVILKVA------GILTVKGGTGAIVEYHG-----PGVDSIS 248
Query: 581 MEQAFELSDASAERSAAACVVRLNKEPMIEYLKSNIKLIDEMIASGYEDKETLKKRRDAM 640
+ + AE A V N M +YL + +A ++D
Sbjct: 249 CTGMATICNMGAEIGATTSVFPYNHR-MKKYLSKTGRADIANLADEFKDH---------- 297
Query: 641 QAWVDNPVLLEPDSNAQYAAVIEIDVAEITEPILACPNDPDDVATLSEV--LADTTGKRP 698
L PD Y VIEI+++E+ +P + P PD ++EV +A+ G P
Sbjct: 298 ---------LVPDPGCHYDQVIEINLSEL-KPHINGPFTPDLAHPVAEVGSVAEKEG-WP 346
Query: 699 HAIDEVFIGSCMT----NIGHFRAFG-EIVKNAPPSQARLWVVPPSKMDEQELINEGYYA 753
I IGSC ++G A + + + +++ + P S+ + +GY
Sbjct: 347 LDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ 406
Query: 754 IFGAAGARTEVPGCSLCMG----NQARVRDNAVVFSTSTRNFDNRMGRGAK--VYLGSAE 807
+ G C C+G + + + ++ RNF R + ++ S E
Sbjct: 407 VLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPE 466
Query: 808 LGAACALLGRIPTKEE 823
+ A A+ G + E
Sbjct: 467 IVTALAIAGTLKFNPE 482
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 50.8 bits (120), Expect = 6e-07
Identities = 85/376 (22%), Positives = 145/376 (37%), Gaps = 51/376 (13%)
Query: 466 PGDGVIHTW-LNRMGLPDTLGTGGDSHTRFPLGIS-FPAGSGLVAFAAVTGTMP--LNMP 521
PG G+IH L P L G DSHT G+ G G V +P L P
Sbjct: 140 PGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCP 199
Query: 522 ESVLVRFKGEMNPGITLRDLVNAIPYYAIKKGLLTVEK-KGKINVFNGRILEIEGLPDIK 580
+ + V+ G ++ + +D++ + G+LTV+ G I ++G G+ I
Sbjct: 200 KVIGVKLTGSLSGWTSPKDVILKVA------GILTVKGGTGAIVEYHG-----PGVDSIS 248
Query: 581 MEQAFELSDASAERSAAACVVRLNKEPMIEYLKSNIKLIDEMIASGYEDKETLKKRRDAM 640
+ + AE A V N M +YL + +A ++D
Sbjct: 249 CTGMATICNMGAEIGATTSVFPYNHR-MKKYLSKTGRADIANLADEFKDH---------- 297
Query: 641 QAWVDNPVLLEPDSNAQYAAVIEIDVAEITEPILACPNDPDDVATLSEV--LADTTGKRP 698
L PD Y VIEI+++E+ +P + P PD ++EV +A+ G P
Sbjct: 298 ---------LVPDPGCHYDQVIEINLSEL-KPHINGPFTPDLAHPVAEVGSVAEKEG-WP 346
Query: 699 HAIDEVFIGSCMT----NIGHFRAFG-EIVKNAPPSQARLWVVPPSKMDEQELINEGYYA 753
I IGSC ++G A + + + +++ + P S+ + +GY
Sbjct: 347 LDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ 406
Query: 754 IFGAAGARTEVPGCSLCMG----NQARVRDNAVVFSTSTRNFDNRMGRGAK--VYLGSAE 807
+ G C C+G + + + ++ RNF R + ++ S E
Sbjct: 407 VLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPE 466
Query: 808 LGAACALLGRIPTKEE 823
+ A A+ G + E
Sbjct: 467 IVTALAIAGTLKFNPE 482
>pdb|1QQP|2 Chain 2, Foot-And-Mouth Disease Virus OLIGOSACCHARIDE RECEPTOR
Complex.
pdb|1FOD|2 Chain 2, Foot-And-Mouth Disease Virus (Reduced)
pdb|1BBT|2 Chain 2, Foot-And-Mouth Disease Virus
Length = 218
Score = 28.9 bits (63), Expect = 2.5
Identities = 22/74 (29%), Positives = 36/74 (47%), Gaps = 7/74 (9%)
Query: 386 GVKGILPGTYC------EPKVTTVGSQDTTGAMTRDEVKELASLKFDAPFVLQSFCHTAA 439
GV G L +Y + +VT VG+Q G + V EL S++ + L F H
Sbjct: 89 GVYGSLTDSYAYMRNGWDVEVTAVGNQFNGGCLLVAMVPELCSIQKRELYQLTLFPHQFI 148
Query: 440 YPKPSDVSLHATLP 453
P+ ++++ H T+P
Sbjct: 149 NPR-TNMTAHITVP 161
>pdb|1D9Y|A Chain A, Neisseria Gonorrhoeae Ferric Binding Protein
Length = 309
Score = 27.7 bits (60), Expect = 5.6
Identities = 36/131 (27%), Positives = 54/131 (40%), Gaps = 16/131 (12%)
Query: 217 IKAIKTKGVPVAYVG---DVVGTGSSRKSATNSIMWH-FGKD---------IPFVPNKRS 263
+K +K G P A V G + N+ WH F ++ + FV ++
Sbjct: 162 LKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDP 221
Query: 264 GGIVIGGVIAPIFFATCEDSGALPIVADVKDLKEGDLIKIYPYKGEITLNDKVVSTFKLE 323
G +V A + + +D A VA + KEG + + E LN VVSTF LE
Sbjct: 222 GALVTYSGAAVLKSSQNKDE-AKKFVAFLAG-KEGQRA-LTAVRAEYPLNPHVVSTFNLE 278
Query: 324 PETLLDEVRAS 334
P L+ + S
Sbjct: 279 PIAKLEAPQVS 289
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
Length = 345
Score = 27.7 bits (60), Expect = 5.6
Identities = 30/126 (23%), Positives = 58/126 (45%), Gaps = 22/126 (17%)
Query: 25 PLNAK-QVQAV-----VEILTKDPTNAAFAKELLIHRVSPGVDEGAKVKAEFLAKLSQKK 78
P NAK Q+ V +++L+K F K +L++ PG+DE + + F+ +S++
Sbjct: 182 PANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYG-EPGIDEVSPIGNTFMKIVSKRG 240
Query: 79 LECVHISALEATTLLGTMLGGYNVEPLIMGLESQDKNIAKESAKALKTTLLVYGSFDKIA 138
+E V ++ + + + P+ +E N A++S A+K G + +A
Sbjct: 241 IEEVKLNVTD-----------FGISPI--PIEKLIVNSAEDS--AIKIVRAFLGKDEHVA 285
Query: 139 AMSKTN 144
K N
Sbjct: 286 EFIKIN 291
>pdb|1MPB| Maltodextrin-Binding Protein (Maltose-Binding Protein) Mutant,
With Arginine Replacing Tryptophan At Position 230
(Trp-230-Arg)
pdb|1MPD| Maltodextrin-Binding Protein (Maltose-Binding Protein) Mutant,
With Arginine Replacing Tryptophan At Position 230
(Trp-230-Arg), Complexed With Maltose
pdb|1MPC| Maltodextrin-Binding Protein (Maltose-Binding Protein) Mutant,
With Arginine Replacing Tryptophan At Position 230
(Trp-230-Arg)
Length = 370
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MMKDFLEDYKKSVSERGSEGI-PPLPLNAKQVQAVVEILTKDPTNAAFAKELLIHRVSPG 59
+ K+FLE+Y +++ G E + PL A +++ E L KDP AA + + P
Sbjct: 275 LAKEFLENYL--LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPN 332
Query: 60 VDE 62
+ +
Sbjct: 333 IPQ 335
>pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|B Chain B, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|C Chain C, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
Length = 389
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MMKDFLEDYKKSVSERGSEGI-PPLPLNAKQVQAVVEILTKDPTNAAFAKELLIHRVSPG 59
+ K+FLE+Y +++ G E + PL A +++ E L KDP AA + + P
Sbjct: 275 LAKEFLENYL--LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPN 332
Query: 60 VDE 62
+ +
Sbjct: 333 IPQ 335
>pdb|1IUD| Maltodextrin-Binding Protein InsertionDELETION MUTANT With An
Inserted B-Cell Epitope From The Pres2 Region Of
Hepatitis B Virus
Length = 380
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MMKDFLEDYKKSVSERGSEGI-PPLPLNAKQVQAVVEILTKDPTNAAFAKELLIHRVSPG 59
+ K+FLE+Y +++ G E + PL A +++ E L KDP AA + + P
Sbjct: 285 LAKEFLENYL--LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPN 342
Query: 60 VDE 62
+ +
Sbjct: 343 IPQ 345
>pdb|1EFV|A Chain A, Three-Dimensional Structure Of Human Electron Transfer
Flavoprotein To 2.1 A Resolution
Length = 315
Score = 27.3 bits (59), Expect = 7.3
Identities = 24/74 (32%), Positives = 32/74 (42%), Gaps = 3/74 (4%)
Query: 254 DIPFVPNKRSGGIVIGGVIAPIFFATCEDSGALPIVADVKDLKEGDLIKIYPYKGEITLN 313
D FVPN G G ++AP + SGA+ +A +KD K I P +
Sbjct: 235 DAGFVPNDMQVGQT-GKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVA 293
Query: 314 DK--VVSTFKLEPE 325
D V FK+ PE
Sbjct: 294 DYGIVADLFKVVPE 307
>pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin
pdb|1EZP|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin Using Peptide Orientations From
Dipolar Couplings
Length = 370
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MMKDFLEDYKKSVSERGSEGI-PPLPLNAKQVQAVVEILTKDPTNAAFAKELLIHRVSPG 59
+ K+FLE+Y +++ G E + PL A +++ E L KDP AA + + P
Sbjct: 275 LAKEFLENYL--LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPN 332
Query: 60 VDE 62
+ +
Sbjct: 333 IPQ 335
>pdb|1HTP| H-Protein (E.C.1.4.4.2) Complexed With Lipoic Acid Charged In
Methylamine
pdb|1DXM|A Chain A, Reduced Form Of The H Protein From Glycine Decarboxylase
Complex
pdb|1DXM|B Chain B, Reduced Form Of The H Protein From Glycine Decarboxylase
Complex
pdb|1HPC|A Chain A, H Protein Of The Glycine Cleavage System
(Aminomethyltransferase) (E.C.1.4.4.2)
pdb|1HPC|B Chain B, H Protein Of The Glycine Cleavage System
(Aminomethyltransferase) (E.C.1.4.4.2)
Length = 131
Score = 27.3 bits (59), Expect = 7.3
Identities = 24/86 (27%), Positives = 35/86 (39%), Gaps = 13/86 (15%)
Query: 472 HTWLNRMGLPDTLGTGGDSHTRF---------PLGISFPAGSGLVAFAAVTGTMPLNMPE 522
H W+ G T+G + G+S G G A +V T +N P
Sbjct: 13 HEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPI 72
Query: 523 SVLVRFKGEMNPGITLR-DLVNAIPY 547
S V E+N G+T + L+N+ PY
Sbjct: 73 SGEVI---EVNTGLTGKPGLINSSPY 95
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MMKDFLEDYKKSVSERGSEGI-PPLPLNAKQVQAVVEILTKDPTNAAFAKELLIHRVSPG 59
+ K+FLE+Y +++ G E + PL A +++ E L KDP AA + + P
Sbjct: 275 LAKEFLENYL--LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPN 332
Query: 60 VDE 62
+ +
Sbjct: 333 IPQ 335
>pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P2(1)crystal Form
pdb|1FQB|A Chain A, Structure Of Maltotriotol Bound To Open-Form Maltodextrin
Binding Protein In P2(1)crystal Form
pdb|1FQD|A Chain A, Crystal Structure Of Maltotetraitol Bound To Closed-Form
Maltodextrin Binding Protein
pdb|1FQC|A Chain A, Crystal Structure Of Maltotriotol Bound To Closed-Form
Maltodextrin Binding Protein
Length = 370
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MMKDFLEDYKKSVSERGSEGI-PPLPLNAKQVQAVVEILTKDPTNAAFAKELLIHRVSPG 59
+ K+FLE+Y +++ G E + PL A +++ E L KDP AA + + P
Sbjct: 275 LAKEFLENYL--LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPN 332
Query: 60 VDE 62
+ +
Sbjct: 333 IPQ 335
>pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose Binding Protein
With Xenon
pdb|3MBP| Maltodextrin-Binding Protein With Bound Maltotriose
pdb|1EZ9|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1EZ9|B Chain B, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|4MBP| Maltodextrin Binding Protein With Bound Maltetrose
pdb|1JW4|A Chain A, Structure Of Ligand-Free Maltodextrin-Binding Protein
pdb|1ANF| Maltodextrin Binding Protein With Bound Maltose
pdb|1DMB| D-Maltodextrin-Binding Protein
pdb|1OMP| D-Maltodextrin-Binding Protein
pdb|1JW5|A Chain A, Structure Of Maltose Bound To Open-Form Maltodextrin-
Binding Protein In P1 Crystal
Length = 370
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MMKDFLEDYKKSVSERGSEGI-PPLPLNAKQVQAVVEILTKDPTNAAFAKELLIHRVSPG 59
+ K+FLE+Y +++ G E + PL A +++ E L KDP AA + + P
Sbjct: 275 LAKEFLENYL--LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPN 332
Query: 60 VDE 62
+ +
Sbjct: 333 IPQ 335
>pdb|1MDP|1 Chain 1, Maltodextrin-Binding Protein (Male178 Mutant)
(Maltose-Binding Protein) Mutant With Asp 134 And Pro
135 Inserted And Residues Ala 134 - Lys 142 Deleted
(Ins(D134,P135),Del(136-142)) Complexed With Maltose
pdb|1MDP|2 Chain 2, Maltodextrin-Binding Protein (Male178 Mutant)
(Maltose-Binding Protein) Mutant With Asp 134 And Pro
135 Inserted And Residues Ala 134 - Lys 142 Deleted
(Ins(D134,P135),Del(136-142)) Complexed With Maltose
Length = 363
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MMKDFLEDYKKSVSERGSEGI-PPLPLNAKQVQAVVEILTKDPTNAAFAKELLIHRVSPG 59
+ K+FLE+Y +++ G E + PL A +++ E L KDP AA + + P
Sbjct: 268 LAKEFLENYL--LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPN 325
Query: 60 VDE 62
+ +
Sbjct: 326 IPQ 328
>pdb|1THF|D Chain D, Cyclase Subunit Of Imidazoleglycerolphosphate Synthase
From Thermotoga Maritima
Length = 253
Score = 27.3 bits (59), Expect = 7.3
Identities = 29/108 (26%), Positives = 50/108 (45%), Gaps = 14/108 (12%)
Query: 522 ESVLVRFKGEMNPGITLRDLVNAIPYYAIKKGLLT-VEKKGKINVFNGRILE----IEGL 576
E ++ + G+ N GI LRD V + + LLT +++ G + ++ ++ + L
Sbjct: 137 EFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTL 196
Query: 577 PDI------KMEQAFELSDASAERSAAACVV---RLNKEPMIEYLKSN 615
P I KME E A A+ + AA V ++ + EYLK +
Sbjct: 197 PIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKH 244
>pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure
pdb|1HSJ|B Chain B, Sarr Mbp Fusion Structure
Length = 487
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MMKDFLEDYKKSVSERGSEGI-PPLPLNAKQVQAVVEILTKDPTNAAFAKELLIHRVSPG 59
+ K+FLE+Y +++ G E + PL A +++ E L KDP AA + + P
Sbjct: 275 LAKEFLENYL--LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPN 332
Query: 60 VDE 62
+ +
Sbjct: 333 IPQ 335
>pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding Protein Chimera
Length = 450
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MMKDFLEDYKKSVSERGSEGI-PPLPLNAKQVQAVVEILTKDPTNAAFAKELLIHRVSPG 59
+ K+FLE+Y +++ G E + PL A +++ E L KDP AA + + P
Sbjct: 271 LAKEFLENYL--LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPN 328
Query: 60 VDE 62
+ +
Sbjct: 329 IPQ 331
>pdb|1GPW|C Chain C, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|A Chain A, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|E Chain E, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex
Length = 253
Score = 27.3 bits (59), Expect = 7.3
Identities = 29/108 (26%), Positives = 50/108 (45%), Gaps = 14/108 (12%)
Query: 522 ESVLVRFKGEMNPGITLRDLVNAIPYYAIKKGLLT-VEKKGKINVFNGRILE----IEGL 576
E ++ + G+ N GI LRD V + + LLT +++ G + ++ ++ + L
Sbjct: 137 EFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTL 196
Query: 577 PDI------KMEQAFELSDASAERSAAACVV---RLNKEPMIEYLKSN 615
P I KME E A A+ + AA V ++ + EYLK +
Sbjct: 197 PIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKH 244
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
Length = 520
Score = 26.9 bits (58), Expect = 9.5
Identities = 14/36 (38%), Positives = 19/36 (51%)
Query: 328 LDEVRASGRIPLIIGRGLTNKARKFLGLGESEAFKK 363
LD+ + G I+G L +KARK L + E KK
Sbjct: 328 LDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKK 363
>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
pdb|1QQJ|B Chain B, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
Length = 419
Score = 26.9 bits (58), Expect = 9.5
Identities = 28/102 (27%), Positives = 41/102 (39%), Gaps = 20/102 (19%)
Query: 178 DGETNTDDLSPASDAFTRSDIPLHAKAMLKNRIENYEQRIKAIKTKGVPVAYVGDVVGTG 237
+ + +L AS A R D L +A +A T +P A +GD
Sbjct: 80 EARASLQNLLSASQARLRDDKELRQRAFTS----------QASATMHLP-ATIGDYTDFY 128
Query: 238 SSRKSATNSIMWHFGKDIPFVPN---------KRSGGIVIGG 270
SSR+ ATN + GK+ +PN R+ IV+ G
Sbjct: 129 SSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSG 170
>pdb|1HYO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
Length = 421
Score = 26.9 bits (58), Expect = 9.5
Identities = 28/102 (27%), Positives = 41/102 (39%), Gaps = 20/102 (19%)
Query: 178 DGETNTDDLSPASDAFTRSDIPLHAKAMLKNRIENYEQRIKAIKTKGVPVAYVGDVVGTG 237
+ + +L AS A R D L +A +A T +P A +GD
Sbjct: 82 EARASLQNLLSASQARLRDDKELRQRAFTS----------QASATMHLP-ATIGDYTDFY 130
Query: 238 SSRKSATNSIMWHFGKDIPFVPN---------KRSGGIVIGG 270
SSR+ ATN + GK+ +PN R+ IV+ G
Sbjct: 131 SSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSG 172
>pdb|1QCO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
Length = 423
Score = 26.9 bits (58), Expect = 9.5
Identities = 28/102 (27%), Positives = 41/102 (39%), Gaps = 20/102 (19%)
Query: 178 DGETNTDDLSPASDAFTRSDIPLHAKAMLKNRIENYEQRIKAIKTKGVPVAYVGDVVGTG 237
+ + +L AS A R D L +A +A T +P A +GD
Sbjct: 82 EARASLQNLLSASQARLRDDKELRQRAFTS----------QASATMHLP-ATIGDYTDFY 130
Query: 238 SSRKSATNSIMWHFGKDIPFVPN---------KRSGGIVIGG 270
SSR+ ATN + GK+ +PN R+ IV+ G
Sbjct: 131 SSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSG 172
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,957,390
Number of Sequences: 13198
Number of extensions: 217015
Number of successful extensions: 779
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 40
length of query: 853
length of database: 2,899,336
effective HSP length: 96
effective length of query: 757
effective length of database: 1,632,328
effective search space: 1235672296
effective search space used: 1235672296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)