BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645399|ref|NP_207573.1| hypothetical protein
[Helicobacter pylori 26695]
(90 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3CRX|A Chain A, Cre RecombinaseDNA COMPLEX INTERMEDIATE... 27 0.38
pdb|4CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp ... 27 0.38
pdb|1CRX|B Chain B, Cre RecombinaseDNA COMPLEX REACTION INT... 26 0.84
pdb|2SPC|A Chain A, Spectrin (One Repeat Unit) >gi|576412|p... 26 0.84
pdb|1KBU|A Chain A, Cre Recombinase Bound To A Loxp Hollida... 26 0.84
pdb|2CRX|B Chain B, Structure Of The Holliday Junction Inte... 26 0.84
pdb|5CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp ... 26 0.84
pdb|1CRX|A Chain A, Cre RecombinaseDNA COMPLEX REACTION INT... 26 0.84
pdb|1F44|A Chain A, Crystal Structure Of Trimeric Cre Recom... 26 0.84
pdb|1DRG|A Chain A, Crystal Structure Of Trimeric Cre Recom... 26 0.84
pdb|1EZJ|A Chain A, Crystal Structure Of The Multimerizatio... 25 1.9
pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests... 23 7.1
pdb|1ACC| Anthrax Protective Antigen 23 7.1
pdb|1F3G| Phosphocarrier Iiiglcfast >gi|2914331|pdb|1F3Z|... 22 9.2
pdb|1GLB|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complex ... 22 9.2
>pdb|3CRX|A Chain A, Cre RecombinaseDNA COMPLEX INTERMEDIATE I
pdb|3CRX|B Chain B, Cre RecombinaseDNA COMPLEX INTERMEDIATE I
Length = 343
Score = 26.9 bits (58), Expect = 0.38
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 13 ALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
ALAF D Q + N+D ++IR+L + A NT L K+ E+ ++ D+ +
Sbjct: 134 ALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNT----LLKIAEIARIRVKDISR 187
>pdb|4CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
pdb|4CRX|B Chain B, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
Length = 322
Score = 26.9 bits (58), Expect = 0.38
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 13 ALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
ALAF D Q + N+D ++IR+L + A NT L K+ E+ ++ D+ +
Sbjct: 115 ALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNT----LLKIAEIARIRVKDISR 168
>pdb|1CRX|B Chain B, Cre RecombinaseDNA COMPLEX REACTION INTERMEDIATE I
Length = 322
Score = 25.8 bits (55), Expect = 0.84
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 13 ALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
ALAF D Q + N+D ++IR+L + A NT L ++ E+ ++ D+ +
Sbjct: 115 ALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNT----LLRIAEIARIRVKDISR 168
>pdb|2SPC|A Chain A, Spectrin (One Repeat Unit)
pdb|2SPC|B Chain B, Spectrin (One Repeat Unit)
Length = 107
Score = 25.8 bits (55), Expect = 0.84
Identities = 21/61 (34%), Positives = 30/61 (48%), Gaps = 2/61 (3%)
Query: 5 KIVVSWCVAL-AFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSG 63
++ SW A AFL+AD AN + LIK+ D K I+ +I L+ V + L
Sbjct: 13 ELAESWMSAREAFLNADD-DANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIA 71
Query: 64 Q 64
Q
Sbjct: 72 Q 72
>pdb|1KBU|A Chain A, Cre Recombinase Bound To A Loxp Holliday Junction
pdb|1KBU|B Chain B, Cre Recombinase Bound To A Loxp Holliday Junction
Length = 349
Score = 25.8 bits (55), Expect = 0.84
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 13 ALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
ALAF D Q + N+D ++IR+L + A NT L ++ E+ ++ D+ +
Sbjct: 140 ALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNT----LLRIAEIARIRVKDISR 193
>pdb|2CRX|B Chain B, Structure Of The Holliday Junction Intermediate In
Cre-Loxp Site-Specific Recombination
pdb|2CRX|A Chain A, Structure Of The Holliday Junction Intermediate In
Cre-Loxp Site-Specific Recombination
Length = 343
Score = 25.8 bits (55), Expect = 0.84
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 13 ALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
ALAF D Q + N+D ++IR+L + A NT L ++ E+ ++ D+ +
Sbjct: 134 ALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNT----LLRIAEIARIRVKDISR 187
>pdb|5CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
pdb|5CRX|B Chain B, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
Length = 345
Score = 25.8 bits (55), Expect = 0.84
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 13 ALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
ALAF D Q + N+D ++IR+L + A NT L ++ E+ ++ D+ +
Sbjct: 134 ALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNT----LLRIAEIARIRVKDISR 187
>pdb|1CRX|A Chain A, Cre RecombinaseDNA COMPLEX REACTION INTERMEDIATE I
Length = 322
Score = 25.8 bits (55), Expect = 0.84
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 13 ALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
ALAF D Q + N+D ++IR+L + A NT L ++ E+ ++ D+ +
Sbjct: 115 ALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNT----LLRIAEIARIRVKDISR 168
>pdb|1F44|A Chain A, Crystal Structure Of Trimeric Cre Recombinase-Lox Complex
Length = 324
Score = 25.8 bits (55), Expect = 0.84
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 13 ALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
ALAF D Q + N+D ++IR+L + A NT L ++ E+ ++ D+ +
Sbjct: 115 ALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNT----LLRIAEIARIRVKDISR 168
>pdb|1DRG|A Chain A, Crystal Structure Of Trimeric Cre Recombinase-Lox Complex
Length = 323
Score = 25.8 bits (55), Expect = 0.84
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 13 ALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLSGQLGDMRK 70
ALAF D Q + N+D ++IR+L + A NT L ++ E+ ++ D+ +
Sbjct: 114 ALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNT----LLRIAEIARIRVKDISR 167
>pdb|1EZJ|A Chain A, Crystal Structure Of The Multimerization Domain Of The
Phosphoprotein From Sendai Virus
Length = 115
Score = 24.6 bits (52), Expect = 1.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 17 LSADSAQANKAISNADLIKEI-------RDLKKIISAQNTEINNL 54
LSA+ + A K N L+K+I RD+ K S E N+L
Sbjct: 58 LSAEKSSARKVDENKQLLKQIQESVESFRDIYKRFSEYQKEQNSL 102
>pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
Is Achieved
Length = 482
Score = 22.7 bits (47), Expect = 7.1
Identities = 11/28 (39%), Positives = 14/28 (49%)
Query: 62 SGQLGDMRKDILSTRDYCISLRPYIYNW 89
S Q + R D+L C +LRP NW
Sbjct: 127 SWQHDNSRWDLLDVMRACYALRPEGINW 154
>pdb|1ACC| Anthrax Protective Antigen
Length = 735
Score = 22.7 bits (47), Expect = 7.1
Identities = 18/78 (23%), Positives = 39/78 (49%), Gaps = 12/78 (15%)
Query: 23 QANKAISNAD----LIKEIRDLKKIISAQNTEINNLRKVQEVLSGQ-----LGDMRKD-- 71
+A++ + N+ L+ +D++KI+S EI + ++EV++ + + +R+D
Sbjct: 614 EAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQDGK 673
Query: 72 -ILSTRDYCISLRPYIYN 88
+ + Y L YI N
Sbjct: 674 TFIDFKKYNDKLPLYISN 691
>pdb|1F3G| Phosphocarrier Iiiglcfast
pdb|1F3Z| Iiaglc-Zn Complex
Length = 161
Score = 22.3 bits (46), Expect = 9.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 7 VVSWCVALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRK 56
V+ + + L A S ISN D IKE+ L ++ T + ++K
Sbjct: 112 VIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK 161
>pdb|1GLB|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complex With Glycerol, Adp,
And The (Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc)
pdb|1GLA|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complex With Glycerol And
The (Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc)
pdb|2F3G|A Chain A, Iiaglc Crystal Form Iii
pdb|2F3G|B Chain B, Iiaglc Crystal Form Iii
pdb|1GGR|A Chain A, Complex Of Enzyme Iiaglc And The Histidine-Containing
Phosphocarrier Protein Hpr From Escherichia Coli Nmr,
Restrained Regularized Mean Structure
pdb|1GLC|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate,
Mg(Ii) And Zn(Ii)
pdb|1GLE|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate
And Zn(Ii)
pdb|1GLD|F Chain F, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate
And Mn(Ii)
Length = 168
Score = 22.3 bits (46), Expect = 9.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 7 VVSWCVALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRK 56
V+ + + L A S ISN D IKE+ L ++ T + ++K
Sbjct: 119 VIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK 168
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,137
Number of Sequences: 13198
Number of extensions: 11294
Number of successful extensions: 57
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 15
length of query: 90
length of database: 2,899,336
effective HSP length: 66
effective length of query: 24
effective length of database: 2,028,268
effective search space: 48678432
effective search space used: 48678432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)