BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645400|ref|NP_207574.1| hypothetical protein
[Helicobacter pylori 26695]
         (429 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1EXM|A  Chain A, Crystal Structure Of Thermus Thermophil...    29  0.89
pdb|1EFT|    Elongation Factor Tu (Ef-Tu) Complexed With Gua...    29  1.2
pdb|1LNS|A  Chain A, Crystal Structure Analysis Of The X-Pro...    27  3.4
pdb|1GV0|A  Chain A, Structural Basis For Thermophilic Prote...    26  9.9

>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
           Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
           Gppnhp.
 pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
 pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
          Length = 405

 Score = 29.3 bits (64), Expect = 0.89
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 226 LSMLTAFINPNSPVIEYDD-DGLIGERLRQIT-ESLSIEV----KHQENISYKQATSFSK 279
           L+ +TA  NPN  V +Y D D    ER R IT  +  +E     +H  ++       + K
Sbjct: 31  LTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK 90

Query: 280 NFRKNDAFFKNSILILNT-----PTTKSGLILSQIGLLEYKPLKILSTQINFNPSLLLLT 334
           N     A    +IL+++      P T+  ++L++   + Y  + +    +  +P LL L 
Sbjct: 91  NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLV 150

Query: 335 QPKDRKDLFIVNALQNSDETLIEYASLLESDLRH 368
           + + R DL         +  +I  ++LL  +  H
Sbjct: 151 EMEVR-DLLNQYEFPGDEVPVIRGSALLALEQMH 183



>pdb|1EFT|   Elongation Factor Tu (Ef-Tu) Complexed With
           Guanosine-5'-(Beta,Gamma-Imido) Triphosphate (Gdpnp)
          Length = 405

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 226 LSMLTAFINPNSPVIEYDD-DGLIGERLRQIT-ESLSIEV----KHQENISYKQATSFSK 279
           L+ +TA  NPN  V +Y D D    ER R IT  +  +E     +H  ++       + K
Sbjct: 31  LTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK 90

Query: 280 NFRKNDAFFKNSILILNT-----PTTKSGLILSQIGLLEYKPLKILSTQINFNPSLLLLT 334
           N     A    +IL+++      P T+  ++L++   + Y  + +    +  +P LL L 
Sbjct: 91  NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLV 150

Query: 335 QPKDRKDLFIVNALQNSDETLIEYASLLESDLRH 368
           + + R DL         +  +I  ++LL  +  H
Sbjct: 151 EMEVR-DLLNQYEFPGDEVPVIRGSALLALEEMH 183



>pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Prolyl Dipeptidyl
           Aminopeptidase From Lactococcus Lactis
          Length = 763

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 67  SQYDNNNQDESLKTYYHD--------ILNKLNPVFIASQTPAKESYEPKIELAVLL 114
           +Q+DNN  DE+ K Y  D          NK N   I  + P+  +    +EL + L
Sbjct: 568 AQFDNNYDDETFKKYSKDFNVFKKDLFENKANEAVIDLELPSMLTINGPVELELRL 623



>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
           Structures Of Thermophilic And Mesophilic Malate
           Dehydrogenases
 pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
           Structures Of Thermophilic And Mesophilic Malate
           Dehydrogenases
          Length = 310

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 190 STPTYVPTVNRAQLENQTERSLSERLYFGGIDYKEQLSMLTAFINPNSPVIEYDDDGLIG 249
           +T   +P  +    E   E  L ER   GG +    L   +AF +P + V+E   + ++ 
Sbjct: 185 TTVAGIPVADLISAERIAE--LVERTRTGGAEIVNHLKQGSAFYSPATSVVEM-VESIVL 241

Query: 250 ERLRQITESLSIE 262
           +R R +T ++S++
Sbjct: 242 DRKRVLTCAVSLD 254



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.316    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,346,473
Number of Sequences: 13198
Number of extensions: 93995
Number of successful extensions: 274
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 4
length of query: 429
length of database: 2,899,336
effective HSP length: 91
effective length of query: 338
effective length of database: 1,698,318
effective search space: 574031484
effective search space used: 574031484
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)