BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645401|ref|NP_207575.1| hypothetical protein
[Helicobacter pylori 26695]
         (455 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1F34|A  Chain A, Crystal Structure Of Ascaris Pepsin Inh...    27  6.2
pdb|1FLH|A  Chain A, Crystal Structure Of Human Uropepsin At...    27  6.2
pdb|1QRP|E  Chain E, Human Pepsin 3a In Complex With A Phosp...    27  6.2
pdb|4PEP|    Pepsin (E.C.3.4.23.1) >gi|230907|pdb|3PEP|  Pep...    26  8.1
pdb|5PEP|    Pepsin (E.C.3.4.23.1)                                 26  8.1
pdb|2PSG|    Pepsinogen >gi|230912|pdb|3PSG|  Pepsinogen           26  8.1
pdb|1PSA|A  Chain A, Pepsin Hydrolase (Acid Proteinase) (E.C...    26  8.1

>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
           Porcine Pepsin
          Length = 326

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 12/43 (27%), Positives = 22/43 (50%)

Query: 67  DSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYG 109
           DS+      ++ S+  G G + G L YD+ +      T+Q++G
Sbjct: 60  DSSTFEATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFG 102



>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
          Length = 326

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  DSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYG 109
           DS+      E  S+  G G + G L YD+ +      T+Q++G
Sbjct: 60  DSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFG 102



>pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
           Iva- Val-Val-Leu(P)-(O) Phe-Ala-Ala-Ome
 pdb|1PSO|E Chain E, Pepsin 3a (E.C.3.4.23.1) Complexed With Pepstatin
 pdb|1PSN|   Pepsin 3a (E.C.3.4.23.1)
          Length = 326

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  DSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYG 109
           DS+      E  S+  G G + G L YD+ +      T+Q++G
Sbjct: 60  DSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFG 102



>pdb|4PEP|   Pepsin (E.C.3.4.23.1)
 pdb|3PEP|   Pepsin (E.C.3.4.23.1)
          Length = 326

 Score = 26.2 bits (56), Expect = 8.1
 Identities = 12/43 (27%), Positives = 22/43 (50%)

Query: 67  DSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYG 109
           DS+      ++ S+  G G + G L YD+ +      T+Q++G
Sbjct: 60  DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFG 102



>pdb|5PEP|   Pepsin (E.C.3.4.23.1)
          Length = 326

 Score = 26.2 bits (56), Expect = 8.1
 Identities = 12/43 (27%), Positives = 22/43 (50%)

Query: 67  DSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYG 109
           DS+      ++ S+  G G + G L YD+ +      T+Q++G
Sbjct: 60  DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFG 102



>pdb|2PSG|   Pepsinogen
 pdb|3PSG|   Pepsinogen
          Length = 370

 Score = 26.2 bits (56), Expect = 8.1
 Identities = 12/43 (27%), Positives = 22/43 (50%)

Query: 67  DSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYG 109
           DS+      ++ S+  G G + G L YD+ +      T+Q++G
Sbjct: 104 DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFG 146



>pdb|1PSA|A Chain A, Pepsin Hydrolase (Acid Proteinase) (E.C.3.4.23.1) Complex
           With A-62095
 pdb|1PSA|B Chain B, Pepsin Hydrolase (Acid Proteinase) (E.C.3.4.23.1) Complex
           With A-62095
          Length = 326

 Score = 26.2 bits (56), Expect = 8.1
 Identities = 12/43 (27%), Positives = 22/43 (50%)

Query: 67  DSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYG 109
           DS+      ++ S+  G G + G L YD+ +      T+Q++G
Sbjct: 60  DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFG 102



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.323    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,818,243
Number of Sequences: 13198
Number of extensions: 126798
Number of successful extensions: 272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 7
length of query: 455
length of database: 2,899,336
effective HSP length: 91
effective length of query: 364
effective length of database: 1,698,318
effective search space: 618187752
effective search space used: 618187752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)