BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645402|ref|NP_207576.1| hypothetical protein
[Helicobacter pylori 26695]
(165 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain 28 0.70
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 27 0.91
pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Co... 27 1.2
pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Co... 27 1.2
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Comp... 27 1.2
pdb|1IAP|A Chain A, Crystal Structure Of P115rhogef Rgrgs D... 27 1.5
pdb|1K23|C Chain C, Inorganic Pyrophosphatase (Family Ii) F... 26 2.0
pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus ... 26 2.6
pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratas... 25 3.5
pdb|1H7R|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolae... 25 3.5
pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolae... 25 3.5
pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolae... 25 3.5
pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotox... 25 4.5
pdb|1MJZ| Structure Of Inorganic Pyrophosphatase Mutant D97n 25 5.9
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesylt... 25 5.9
pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase ... 25 5.9
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 25 5.9
pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase ... 25 5.9
pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase ... 25 5.9
pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase ... 25 5.9
pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase ... 25 5.9
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
Length = 316
Score = 27.7 bits (60), Expect = 0.70
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 98 TIKKALGEPVFPQDALDAALQIDKQLDSFKQDNLIDVKPLKDVLAQ-------LEAELRK 150
T+ K LGE F Q + A+ IDK D K+ + VK LKD + E E+ K
Sbjct: 30 TLGKPLGEGCFGQVVMAEAVGIDK--DKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 87
Query: 151 AINFQKQWLN 160
I K +N
Sbjct: 88 MIGKHKNIIN 97
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 27.3 bits (59), Expect = 0.91
Identities = 15/55 (27%), Positives = 32/55 (57%), Gaps = 1/55 (1%)
Query: 97 ETIKKALGEPVFPQDALDAALQIDKQLDSFKQDNLIDVKPLKDVLAQLEAELRKA 151
ET KA + + + D+ ++K+L++ +++N + LK+ L++ +AE KA
Sbjct: 24 ETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLSK-DAENHKA 77
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 26.9 bits (58), Expect = 1.2
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 5/83 (6%)
Query: 13 AIDIDEVTEAQANSVKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLHEKIKHLRLILE 72
A ++ + T A N L + L L+EK + R HL+ + ++++K + L
Sbjct: 364 AWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPR-----HLEIIYEINQKHLDRIVALF 418
Query: 73 PKPKDKENNPNLKDHQGSETIEI 95
PK D+ +L + +GS+ I +
Sbjct: 419 PKDVDRLRRMSLIEEEGSKRINM 441
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
Length = 847
Score = 26.9 bits (58), Expect = 1.2
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 5/83 (6%)
Query: 13 AIDIDEVTEAQANSVKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLHEKIKHLRLILE 72
A ++ + T A N L + L L+EK + R HL+ + ++++K + L
Sbjct: 365 AWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPR-----HLEIIYEINQKHLDRIVALF 419
Query: 73 PKPKDKENNPNLKDHQGSETIEI 95
PK D+ +L + +GS+ I +
Sbjct: 420 PKDVDRLRRMSLIEEEGSKRINM 442
>pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
Length = 846
Score = 26.9 bits (58), Expect = 1.2
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 5/83 (6%)
Query: 13 AIDIDEVTEAQANSVKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLHEKIKHLRLILE 72
A ++ + T A N L + L L+EK + R HL+ + ++++K + L
Sbjct: 364 AWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPR-----HLEIIYEINQKHLDRIVALF 418
Query: 73 PKPKDKENNPNLKDHQGSETIEI 95
PK D+ +L + +GS+ I +
Sbjct: 419 PKDVDRLRRMSLIEEEGSKRINM 441
>pdb|1IAP|A Chain A, Crystal Structure Of P115rhogef Rgrgs Domain
Length = 211
Score = 26.6 bits (57), Expect = 1.5
Identities = 17/57 (29%), Positives = 30/57 (51%), Gaps = 4/57 (7%)
Query: 94 EIGETIKKALGEPV---FPQDALDAA-LQIDKQLDSFKQDNLIDVKPLKDVLAQLEA 146
E+ T + E V F Q+ + + + + +QL+ F+ L+ + P + LAQLEA
Sbjct: 80 ELDRTRADLISEDVQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEA 136
>pdb|1K23|C Chain C, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
pdb|1K23|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
pdb|1K23|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
pdb|1K23|D Chain D, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
Length = 309
Score = 26.2 bits (56), Expect = 2.0
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 86 DHQGSETIEIGETIKKALGEPVFPQDALDAALQIDKQLDSFKQDNLIDVKPLKDVLAQLE 145
+ G ++ G + K E + DA + L K Q N +D++ +K A+LE
Sbjct: 178 EEYGLNXLKAGADLSKKTVEELISLDAKEFTLGSKKV--EIAQVNTVDIEDVKKRQAELE 235
Query: 146 AELRKAI 152
A + K +
Sbjct: 236 AVISKVV 242
>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
Length = 185
Score = 25.8 bits (55), Expect = 2.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 17 DEVTEAQANSVKLSDQLVSLSDKLLEK 43
DE A+A K++D+ ++ +D+L EK
Sbjct: 152 DETKRAEAEIQKITDEFIAKADQLAEK 178
>pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic
Acid Complex
pdb|1GJP|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Oxosebacic Acid
Length = 340
Score = 25.4 bits (54), Expect = 3.5
Identities = 28/85 (32%), Positives = 35/85 (40%), Gaps = 10/85 (11%)
Query: 80 NNPNLKDHQGSETIEIGETIKKALGEPVFPQDALDAALQIDKQLDSFKQDNLIDVKPLKD 139
N+P L+ Q + K L P+F D D +ID S N I V LKD
Sbjct: 23 NHPLLRQWQSERQLT-----KNMLIFPLFISDNPDDFTEID----SLPNINRIGVNRLKD 73
Query: 140 VLAQLEAE-LRKAINFQKQWLNSTK 163
L L A+ LR I F + TK
Sbjct: 74 YLKPLVAKGLRSVILFGVPLIPGTK 98
>pdb|1H7R|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Succinylacetone At 2.0 A Resolution.
pdb|1H7N|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid At 1.6 A Resolution
pdb|1H7P|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Keto-5-Amino-Hexanoic (Kah) At 1.64 A
Resolution
pdb|1QNV|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) Complex
pdb|1QML|A Chain A, Hg Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase
Length = 342
Score = 25.4 bits (54), Expect = 3.5
Identities = 28/85 (32%), Positives = 35/85 (40%), Gaps = 10/85 (11%)
Query: 80 NNPNLKDHQGSETIEIGETIKKALGEPVFPQDALDAALQIDKQLDSFKQDNLIDVKPLKD 139
N+P L+ Q + K L P+F D D +ID S N I V LKD
Sbjct: 23 NHPLLRQWQSERQLT-----KNMLIFPLFISDNPDDFTEID----SLPNINRIGVNRLKD 73
Query: 140 VLAQLEAE-LRKAINFQKQWLNSTK 163
L L A+ LR I F + TK
Sbjct: 74 YLKPLVAKGLRSVILFGVPLIPGTK 98
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid
Length = 342
Score = 25.4 bits (54), Expect = 3.5
Identities = 28/85 (32%), Positives = 35/85 (40%), Gaps = 10/85 (11%)
Query: 80 NNPNLKDHQGSETIEIGETIKKALGEPVFPQDALDAALQIDKQLDSFKQDNLIDVKPLKD 139
N+P L+ Q + K L P+F D D +ID S N I V LKD
Sbjct: 23 NHPLLRQWQSERQLT-----KNMLIFPLFISDNPDDFTEID----SLPNINRIGVNRLKD 73
Query: 140 VLAQLEAE-LRKAINFQKQWLNSTK 163
L L A+ LR I F + TK
Sbjct: 74 YLKPLVAKGLRSVILFGVPLIPGTK 98
>pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 5-Aminolaevulinic Acid At 1.7 A
Resolution
Length = 341
Score = 25.4 bits (54), Expect = 3.5
Identities = 28/85 (32%), Positives = 35/85 (40%), Gaps = 10/85 (11%)
Query: 80 NNPNLKDHQGSETIEIGETIKKALGEPVFPQDALDAALQIDKQLDSFKQDNLIDVKPLKD 139
N+P L+ Q + K L P+F D D +ID S N I V LKD
Sbjct: 23 NHPLLRQWQSERQLT-----KNMLIFPLFISDNPDDFTEID----SLPNINRIGVNRLKD 73
Query: 140 VLAQLEAE-LRKAINFQKQWLNSTK 163
L L A+ LR I F + TK
Sbjct: 74 YLKPLVAKGLRSVILFGVPLIPGTK 98
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Length = 1295
Score = 25.0 bits (53), Expect = 4.5
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Query: 43 KAVDRGRNTDHLKDLNDLHEKIKHLRLILEPKPKDKENNPNLKDHQGSET-IEIGE 97
K++D+G N K LNDL K+ + L P + N+ N + S+T IE E
Sbjct: 439 KSLDKGYN----KALNDLCIKVNNWDLFFSPSEDNFTNDLNKGEEITSDTNIEAAE 490
>pdb|1MJZ| Structure Of Inorganic Pyrophosphatase Mutant D97n
Length = 175
Score = 24.6 bits (52), Expect = 5.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 52 DHLKDLNDLHEKIK 65
DH+KD+NDL E +K
Sbjct: 118 DHIKDVNDLPELLK 131
>pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
Length = 382
Score = 24.6 bits (52), Expect = 5.9
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 54 LKDLN-DLHEKIKHLRLILEPKPKD 77
LK L DLHE++ ++ I+E +PK+
Sbjct: 141 LKSLQKDLHEEMNYITAIIEEQPKN 165
>pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1INO| Recombinant Inorganic Pyrophosphatase From Escherichia Coli
pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1FAJ| Inorganic Pyrophosphatase
pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
Length = 175
Score = 24.6 bits (52), Expect = 5.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 52 DHLKDLNDLHEKIK 65
DH+KD+NDL E +K
Sbjct: 118 DHIKDVNDLPELLK 131
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
Length = 284
Score = 24.6 bits (52), Expect = 5.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 16 IDEVTEAQAN-------SVKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLND 59
+D EA+A+ S +L D+LVSL KL + + ++ LKD +
Sbjct: 19 LDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQE 69
>pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
pdb|1IGP| Inorganic Pyrophosphatase (E.C.3.6.1.1)
Length = 175
Score = 24.6 bits (52), Expect = 5.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 52 DHLKDLNDLHEKIK 65
DH+KD+NDL E +K
Sbjct: 118 DHIKDVNDLPELLK 131
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
Length = 175
Score = 24.6 bits (52), Expect = 5.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 52 DHLKDLNDLHEKIK 65
DH+KD+NDL E +K
Sbjct: 118 DHIKDVNDLPELLK 131
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
Length = 175
Score = 24.6 bits (52), Expect = 5.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 52 DHLKDLNDLHEKIK 65
DH+KD+NDL E +K
Sbjct: 118 DHIKDVNDLPELLK 131
>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
Length = 175
Score = 24.6 bits (52), Expect = 5.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 52 DHLKDLNDLHEKIK 65
DH+KD+NDL E +K
Sbjct: 118 DHIKDVNDLPELLK 131
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 913,310
Number of Sequences: 13198
Number of extensions: 37484
Number of successful extensions: 91
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 22
length of query: 165
length of database: 2,899,336
effective HSP length: 81
effective length of query: 84
effective length of database: 1,830,298
effective search space: 153745032
effective search space used: 153745032
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)