BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645405|ref|NP_207579.1| preprotein translocase
subunit (secA) [Helicobacter pylori 26695]
(865 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1M6N|A Chain A, Crystal Structure Of The Seca Transloca... 732 0.0
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 33 0.18
pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Del... 30 1.5
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 30 1.5
pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant 29 2.0
pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant 29 2.0
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 29 2.0
pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:a... 29 2.0
pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With As... 29 2.0
pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Ch... 29 2.0
pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6) >gi|493890|pdb|1BL... 29 2.0
pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Pol... 29 2.0
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 29 2.0
pdb|1A6D|B Chain B, Thermosome From T. Acidophilum >gi|4699... 29 2.5
pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase >gi|4388837|pd... 29 2.5
pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mut... 29 2.5
pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mut... 29 2.5
pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exc... 29 2.5
pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Pol... 28 3.3
pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2) ... 28 3.3
pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated ... 28 4.3
pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase... 28 5.7
pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Ace... 28 5.7
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-... 28 5.7
pdb|3PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-C >gi... 27 7.4
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 27 7.4
pdb|4PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-Cst >... 27 7.4
pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At ... 27 9.7
pdb|1QG0|A Chain A, Wild-Type Pea Fnr >gi|4930124|pdb|1QG0|... 27 9.7
pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Na... 27 9.7
pdb|1QFZ|A Chain A, Pea Fnr Y308s Mutant In Complex With Na... 27 9.7
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 732 bits (1889), Expect = 0.0
Identities = 393/791 (49%), Positives = 542/791 (67%), Gaps = 27/791 (3%)
Query: 16 RWIKQYKKQVLTINALEPTYEKMSDDELQNAFEELKKRVRSTEKDLQEKTLLEVLPESFA 75
R + +Y+K I+A+ YE +SDD L++ E K+R+ + T ++L E+FA
Sbjct: 14 RTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLE------KGATTDDLLVEAFA 67
Query: 76 ITREASKRILKMCHFDVQLIGGMVLNDGKIAEMKTGEGKTLVATLAVALNALKGESVYVV 135
+ REAS+R+ M F VQL+GG+ L+DG IAEMKTGEGKTL +TL V LNAL G+ V+VV
Sbjct: 68 VVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVV 127
Query: 136 TVNDYLAHRDSKEMEPLYHFLGYSVGTITASVRDDDERLEIYSKDIVYGTNNEFGFDYLR 195
TVN+YLA RD+++M ++ FLG +VG S+ D++R E Y+ DI Y TNNE GFDYLR
Sbjct: 128 TVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKR-EAYAADITYSTNNELGFDYLR 186
Query: 196 DNMKYSLEHKVQKSHAFAIVDEVDSILIDEARTPLIISGPVDRRMENYNKADEVAKSMQV 255
DNM E VQ+ FA++DEVDSILIDEARTPLIISG + + Y +A+ ++++
Sbjct: 187 DNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKA 246
Query: 256 EIDFTIDEKNRAILITEEGIKKAENLFGVDNLYKIENAALSHHLDQALKANYLFFIDKDY 315
E D+T D K +A+ +TEEG+ KAE FG+DNL+ +++ AL+HH++QALKA+ D DY
Sbjct: 247 EKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDY 306
Query: 316 IVANNEVVIVDEFTGRLSEGRRFSEGLHQALEAKEGVSIKEESQTLADITFQNYFRMFSK 375
+V + +VVIVD FTGRL +GRR+SEGLHQA+EAKEG+ I+ ES TLA ITFQNYFRM+ K
Sbjct: 307 VVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEK 366
Query: 376 LAGMTGTAQTEATEFLEIYNLEVVSIPTNLAIKRKDLNDLIYKSEKEKFDAVILKIKELH 435
LAGMTGTA+TE EF IYN++VV+IPTN + R D DLIY++ + KF AV + + +
Sbjct: 367 LAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY 426
Query: 436 DKGQPVLVGTASIEKSETLHALLKKERIPHTVLNAKQHTKEAEIIKDAGLKGAVTIATNM 495
GQPVLVGT ++E SE + LLK + IPH VLNAK H +EA+II++AG KGAVTIATNM
Sbjct: 427 MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNM 486
Query: 496 AGRGVDIKLTDEIKELGGLYIIGTERHESRRIDNQLRGRSGRQGDPGTSQFYLSLEDNLL 555
AGRG DIKL + +KELGGL ++GTERHESRRIDNQLRGRSGRQGDPG +QFYLS+ED L+
Sbjct: 487 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELM 546
Query: 556 RIFGSDRIKGVMEKLGLKDGEHIESKLVTRAVENAQKKVENLHFESRKHLLEYDDVANEQ 615
R FG++R ++++ G+ D I+SK+V+RAVE++QK+VE +F+SRK LL+YDDV +Q
Sbjct: 547 RRFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQ 606
Query: 616 RKSVYKFRDELLDVNYDISAKIAEN-REYALNQIFSKLKA-----FDHQNLSEE-ELLGL 668
R+ +YK R E++D +EN RE N I S L+ + L EE +L GL
Sbjct: 607 REVIYKQRFEVID---------SENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGL 657
Query: 669 KNILKEDFNAHVSLE--DLKKASPIE--NFVAEKLKSDYENKMKVLDSEQRSRIERIVYL 724
+++ + +LE D+ P E + +++ + Y K + EQ E+++ L
Sbjct: 658 VDLINTTYLDEGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVL 717
Query: 725 QILDNAWREHLYTMDNLKTGINLRGYNQKDPLVEYKKESYNLFLEFIEDIKTEAIKTFSK 784
+ +D+ W +H+ MD L+ GI+LR Y Q +PL EY+ E + +F IE I+ E K K
Sbjct: 718 RAVDSKWMDHIDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVMK 777
Query: 785 IQFENEQDSSD 795
+ EN + +
Sbjct: 778 AEIENNLEREE 788
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 32.7 bits (73), Expect = 0.18
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 589 NAQKKVENLHFESRKHLLEYDDVANEQRKSVYKFRDELLDVNYDISAKIAENREYALNQI 648
N +KK++ L E+ + LLE+ E R+ ++K D L KI +
Sbjct: 126 NRKKKLKKLGIETLRDLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKI----------V 175
Query: 649 FSKLKAFDHQNLSEEELL-GLKNILKEDFNAHVSLEDLKKASPIENFVAEKLKSD-YENK 706
+ K F + N+ L GL ++ + FN LK+ + E FV +KS+ Y +
Sbjct: 176 SVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFVTGTVKSNAYTGQ 235
Query: 707 MKVLDSE 713
++ ++E
Sbjct: 236 YEIHNAE 242
Score = 28.1 bits (61), Expect = 4.3
Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 8 KIIGTRNDRWIKQYKKQVLTINALEPTYEKMSDDEL---QNAFEELKKRVRS---TEKDL 61
K++G ++ + + K T LE E+++ +EL Q AF++++K K +
Sbjct: 297 KLLGVKDAYYGMHFPK---TFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKI 353
Query: 62 QEKTLLEVLPESFAITREASKRILKMCHFDVQLIGGMVLNDGKIAEMKTGEGKTLVATLA 121
+ K E + A KR + D +I +N ++ + G GKT+VA LA
Sbjct: 354 EGKLAEEFIKSLPFKLTNAQKRAHQEIRND--MISEKPMN--RLLQGDVGSGKTVVAQLA 409
Query: 122 VALNALKG-ESVYVVTVNDYLAHRDSKEMEPLYHFLGYSVGTITASVRDDDERLEIYSK- 179
+ N G ++ ++V + + +E F + I A+ + E+++ +
Sbjct: 410 ILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN 469
Query: 180 ---DIVYGTN 186
D+V GT+
Sbjct: 470 GQIDVVIGTH 479
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 242
Score = 29.6 bits (65), Expect = 1.5
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S+ +++ + E++P+
Sbjct: 2 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPY 56
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 57 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 113
Query: 515 YIIGTERHESRRIDNQLRGRSGRQGDPGTS 544
+++ +L+ + +P TS
Sbjct: 114 ----------KKVKQRLKELGDKVTNPDTS 133
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 29.6 bits (65), Expect = 1.5
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 215 VDEVDSILIDEARTPLIISGPVDRRMENYNKADEVAKSMQVEIDFTIDEKNRA 267
V EVD L+D+ RT + + V+R +E + KS++ ++ ++K A
Sbjct: 787 VVEVDQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNA 839
>pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 29.3 bits (64), Expect = 2.0
Identities = 29/120 (24%), Positives = 54/120 (44%), Gaps = 23/120 (19%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S+ +++ + E++P+
Sbjct: 2 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPY 56
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 57 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 113
>pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 29.3 bits (64), Expect = 2.0
Identities = 29/120 (24%), Positives = 54/120 (44%), Gaps = 23/120 (19%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S+ +++ + E++P+
Sbjct: 2 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPY 56
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 57 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 113
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 29.3 bits (64), Expect = 2.0
Identities = 29/120 (24%), Positives = 54/120 (44%), Gaps = 23/120 (19%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S+ +++ + E++P+
Sbjct: 2 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPY 56
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 57 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 113
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 29.3 bits (64), Expect = 2.0
Identities = 29/120 (24%), Positives = 54/120 (44%), Gaps = 23/120 (19%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S+ +++ + E++P+
Sbjct: 2 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPY 56
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 57 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 113
>pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With Asp 179 Replaced By
Asn (D179n)
Length = 257
Score = 29.3 bits (64), Expect = 2.0
Identities = 29/120 (24%), Positives = 54/120 (44%), Gaps = 23/120 (19%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S+ +++ + E++P+
Sbjct: 1 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPY 55
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 56 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 112
>pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
pdb|1PIO|B Chain B, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
Length = 257
Score = 29.3 bits (64), Expect = 2.0
Identities = 29/120 (24%), Positives = 54/120 (44%), Gaps = 23/120 (19%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S+ +++ + E++P+
Sbjct: 2 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPY 56
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 57 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 113
>pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6)
pdb|1BLC| Beta-Lactamase (E.C.3.5.2.6) Complex With Degradation Products Of
Clavulanate
pdb|1BLH| Beta-Lactamase (E.C.3.5.2.6) Complexed With
[[n-(Benzyloxycarbonyl)amino]methyl]phosphonate
Length = 257
Score = 29.3 bits (64), Expect = 2.0
Identities = 29/120 (24%), Positives = 54/120 (44%), Gaps = 23/120 (19%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S+ +++ + E++P+
Sbjct: 1 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPY 55
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 56 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 112
>pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
Length = 352
Score = 29.3 bits (64), Expect = 2.0
Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 14/152 (9%)
Query: 569 KLGLKDGEHI--ESKLVTRAV---------ENAQKKVENL--HFESRKHLLEYDDVANEQ 615
K G+K G I K++ AV + ++ NL + + + D+ +
Sbjct: 52 KFGVKAGIPIVEAKKILPNAVYLPXRKEVYQQVSSRIXNLLREYSEKIEIASIDEAYLDI 111
Query: 616 RKSVYKFRDELLDVNYDISAKIAENREYALNQIFSKLKAFDHQNLSEEELLGLKNILKED 675
V +R E ++ +I KI E + + SK K F + G+K I E+
Sbjct: 112 SDKVRDYR-EAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADXAKPNGIKVIDDEE 170
Query: 676 FNAHVSLEDLKKASPIENFVAEKLKSDYENKM 707
+ D+ I N AEKLK NK+
Sbjct: 171 VKRLIRELDIADVPGIGNITAEKLKKLGINKL 202
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 29.3 bits (64), Expect = 2.0
Identities = 29/120 (24%), Positives = 54/120 (44%), Gaps = 23/120 (19%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S+ +++ + E++P+
Sbjct: 47 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPY 101
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 102 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 158
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome - Mg-Adp-Alf3 Complex
Length = 543
Score = 28.9 bits (63), Expect = 2.5
Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Query: 572 LKDGEHIESKLVTRAVENAQKKVENLHFESRKHLLEYDDVANEQRKSVYKFRDELLDVNY 631
+ +G + S+ R ++ K+ K LL + KS +D+L +++Y
Sbjct: 122 ISEGYRMASEEAKRVIDEISTKIG----ADEKALLLKMAQTSLNSKSASVAKDKLAEISY 177
Query: 632 DISAKIAENREYALNQIFSKLKAFDHQNLSEEELLGLKNILKEDFNAHVSLEDLKKASPI 691
+ +AE R+ F ++ Q + ++ + I+ + H + D+ K + I
Sbjct: 178 EAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKI 237
Query: 692 ENFVA--EKLKSDYENKMKVLD 711
A E K +++ +++ D
Sbjct: 238 ALLDAPLEIKKPEFDTNLRIED 259
>pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-Trna Synthetase
Length = 438
Score = 28.9 bits (63), Expect = 2.5
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 20/99 (20%)
Query: 704 ENKMKVLDSEQR--SRIERIVYLQILDNAWREHLYTMDNLKTGINLRGYNQKDPLVEYKK 761
+++M ++ E+ S +ER+V I N REH N K +++ + ++P + + +
Sbjct: 231 DSEMAFIEDEEEVMSFLERLVAHAI--NYVREH-----NAKE-LDILNFELEEPKLPFPR 282
Query: 762 ESYNLFLEFI----------EDIKTEAIKTFSKIQFENE 790
SY+ LE + EDI TE + K ENE
Sbjct: 283 VSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMENE 321
>pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 120k
pdb|1DJB| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 298k
Length = 257
Score = 28.9 bits (63), Expect = 2.5
Identities = 29/120 (24%), Positives = 54/120 (44%), Gaps = 23/120 (19%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S+ +++ + E++P+
Sbjct: 1 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYAATSKAINSAILLEQVPY 55
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 56 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 112
>pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mutant, At 298k
Length = 258
Score = 28.9 bits (63), Expect = 2.5
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 410 KDLNDLIYKSEKEKFDAVILKIKELHDKGQPVLVGT----ASIEKSETLHALLKKERIPH 465
K+LNDL ++K++A I G+ V + A S +++ + E++P+
Sbjct: 2 KELNDL-----EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSHAINSAILLEQVPY 56
Query: 466 TVLNAKQHTKEAEII-----------KDAGLKGAVTIATNMAGRGVDIKLTDEIKELGGL 514
LN K H + +I+ KD LK + + + + K+ IKE+GG+
Sbjct: 57 NKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKI---IKEIGGI 113
>pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
pdb|1DKG|B Chain B, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 197
Score = 28.9 bits (63), Expect = 2.5
Identities = 29/121 (23%), Positives = 57/121 (46%), Gaps = 13/121 (10%)
Query: 196 DNMKYSLEHKVQKSHAFAIVDEVDSILIDEARTPLIISGPVDRRMENYNKADEVAKSMQV 255
+N++ E ++K+H FA+ ++ +L P+I S +DR +E +KA+ +M
Sbjct: 70 ENLRRRTELDIEKAHKFALEKFINELL------PVIDS--LDRALEVADKANPDMSAMVE 121
Query: 256 EIDFTIDEKNRAILITEEGIKK-AENLFGVDNLYKIENAALSHHLDQALKANYLFFIDKD 314
+I+ T+ K+ ++ + G++ AE +D + A D N L + K
Sbjct: 122 DIELTL--KSMLDVVRKFGVEVIAETNVPLDP--NVHQAIAMVESDDVAPGNVLGIMQKG 177
Query: 315 Y 315
Y
Sbjct: 178 Y 178
>pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
Length = 352
Score = 28.5 bits (62), Expect = 3.3
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 621 KFRD--ELLDVNYDISAKIAENREYALNQIFSKLKAFDHQNLSEEELLGLKNILKEDFNA 678
K RD E ++ +I KI E + + SK K F + G+K I E+
Sbjct: 114 KVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKR 173
Query: 679 HVSLEDLKKASPIENFVAEKLKSDYENKM 707
+ D+ I N AEKLK NK+
Sbjct: 174 LIRELDIADVPGIGNITAEKLKKLGINKL 202
>pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|B Chain B, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|D Chain D, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|F Chain F, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|C Chain C, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|E Chain E, Human Vimentin Coil 2b Fragment (Cys2)
Length = 84
Score = 28.5 bits (62), Expect = 3.3
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 561 DRIKGVMEKLGLKDGEHIESKLVTRA-----VENAQKKVENLHFESRKHLLEYDDVAN 613
D +KG E L + E E+ V A + Q +++N+ E +HL EY D+ N
Sbjct: 4 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
Length = 161
Score = 28.1 bits (61), Expect = 4.3
Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 284 VDNLYKIENAALSHHLDQALKANYLFFI--DKDYIVANNEVVIVDEFTGRLSEGRRFSEG 341
+D++YK L+ KA + F+ +D ++ E+ V G+ E
Sbjct: 1 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEM 60
Query: 342 LHQALEAKEGV------------SIKEESQTLADITFQNYFRMFSKLAGMTGTAQTEATE 389
+ + E G S+K++S+ ++ + FRMF K A
Sbjct: 61 IDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDK----------NADG 110
Query: 390 FLEIYNLEVVSIPTNLAIKRKDLNDLIYKSEK 421
++++ L+++ T I D+ +L+ +K
Sbjct: 111 YIDLEELKIMLQATGETITEDDIEELMKDGDK 142
>pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
pdb|1IK9|B Chain B, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
Length = 213
Score = 27.7 bits (60), Expect = 5.7
Identities = 22/79 (27%), Positives = 39/79 (48%), Gaps = 7/79 (8%)
Query: 751 NQKDPLVEYKKESYNLF-----LEFIEDIKTEAIKTFSKIQFENEQDSSDAERYLDNFSE 805
N KD V ++ S+NL E I ++ A+ T ++ Q +NE + ER L ++++
Sbjct: 100 NLKD--VSFRLGSFNLEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWND 157
Query: 806 EREHESVTYRHEEALDEDL 824
+ +EAL+ DL
Sbjct: 158 VQGRFEKAVSAKEALETDL 176
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
Length = 468
Score = 27.7 bits (60), Expect = 5.7
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 251 KSMQVEIDFTIDEKNRAILITEEGIKKAENLFGVDNLYKIENAALSHHLDQ 301
+S++ IDF I+ KN A ++T E +N FG + + +NA + ++Q
Sbjct: 118 ESLKNLIDFHINHKNVATILTAE----TDNPFGYGRIVRNDNAEVLRIVEQ 164
>pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
Length = 459
Score = 27.7 bits (60), Expect = 5.7
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 251 KSMQVEIDFTIDEKNRAILITEEGIKKAENLFGVDNLYKIENAALSHHLDQ 301
+S++ IDF I+ KN A ++T E +N FG + + +NA + ++Q
Sbjct: 109 ESLKNLIDFHINHKNVATILTAE----TDNPFGYGRIVRNDNAEVLRIVEQ 155
>pdb|3PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-C
pdb|3PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-C
pdb|1PBG|B Chain B, Mol_id: 1; Molecule: 6-Phospho-Beta-D-Galactosidase;
Chain: A, B; Synonym: Pgal; Ec: Ec 3.2.1.85; Engineered:
Yes; Other_details: Precipitant Polyethylene Glycol
pdb|1PBG|A Chain A, Mol_id: 1; Molecule: 6-Phospho-Beta-D-Galactosidase;
Chain: A, B; Synonym: Pgal; Ec: Ec 3.2.1.85; Engineered:
Yes; Other_details: Precipitant Polyethylene Glycol
Length = 468
Score = 27.3 bits (59), Expect = 7.4
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 140 YLAHRDSKEMEPLYHFLGYSVGTITASVRDDDERLEIYSKDIVYGTNNEFGFDYLRDNMK 199
YL H K ME + H L + G + +RD+D + +KD+ N+ G +Y +
Sbjct: 251 YLGHYSDKTMEGVNHILAENGGEL--DLRDEDFQALDAAKDL----NDFLGINYYMSDWM 304
Query: 200 YSLEHKVQKSH 210
+ + + + H
Sbjct: 305 QAFDGETEIIH 315
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 27.3 bits (59), Expect = 7.4
Identities = 24/106 (22%), Positives = 43/106 (39%), Gaps = 24/106 (22%)
Query: 414 DLIYKSEKEKFDAVI---------LKIKELHDKGQPVLVGTASIEKSETLHALLKKERIP 464
DL ++E+ K D VI +++ + K PVL+G + K+ + L ++
Sbjct: 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR---- 66
Query: 465 HTVLNAKQHTKEAEIIKDAGLKGAVTIATNMAGRGVDIKLTDEIKE 510
++N + GLKG +A +M K E +E
Sbjct: 67 --IINGE---------VPEGLKGRRVLALDMGALVAGAKYRGEFEE 101
>pdb|4PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-Cst
pdb|4PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-Cst
Length = 468
Score = 27.3 bits (59), Expect = 7.4
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 140 YLAHRDSKEMEPLYHFLGYSVGTITASVRDDDERLEIYSKDIVYGTNNEFGFDYLRDNMK 199
YL H K ME + H L + G + +RD+D + +KD+ N+ G +Y +
Sbjct: 251 YLGHYSDKTMEGVNHILAENGGEL--DLRDEDFQALDAAKDL----NDFLGINYYMSDWM 304
Query: 200 YSLEHKVQKSH 210
+ + + + H
Sbjct: 305 QAFDGETEIIH 315
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
Length = 345
Score = 26.9 bits (58), Expect = 9.7
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 17/124 (13%)
Query: 23 KQVLTINALEPTYEKMSDDELQNAFEELKKRVR-------STEKDLQEKTLLEVLPESFA 75
K L +L+P + +++D+ + F+EL K+ + ST+ ++ + P A
Sbjct: 25 KDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQNSIKVAQWMIQQPHKAA 84
Query: 76 IT---------REASKRILKMCHFDVQLIGGMVLNDGKIAEMKTGEGKTLVATLAVALNA 126
E KR H D G A TG+ ++L+A LA A N
Sbjct: 85 TFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACITGDNRSLIANLAAA-NC 143
Query: 127 LKGE 130
K E
Sbjct: 144 YKKE 147
>pdb|1QG0|A Chain A, Wild-Type Pea Fnr
pdb|1QG0|B Chain B, Wild-Type Pea Fnr
Length = 308
Score = 26.9 bits (58), Expect = 9.7
Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 399 VSIPTNLAIKRKDLNDLIYKSEKEKF--DAVILKIKELHDKGQPVLVGTASIEKSETLHA 456
+ +PT+ ++ K+ + + + E F D + + ++++DKG+ + + T + +E L
Sbjct: 196 LGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR-EQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 457 LLKKE 461
LLKK+
Sbjct: 255 LLKKD 259
>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+
pdb|1QGA|B Chain B, Pea Fnr Y308w Mutant In Complex With Nadp+
Length = 308
Score = 26.9 bits (58), Expect = 9.7
Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 399 VSIPTNLAIKRKDLNDLIYKSEKEKF--DAVILKIKELHDKGQPVLVGTASIEKSETLHA 456
+ +PT+ ++ K+ + + + E F D + + ++++DKG+ + + T + +E L
Sbjct: 196 LGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR-EQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 457 LLKKE 461
LLKK+
Sbjct: 255 LLKKD 259
>pdb|1QFZ|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadph
pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+
pdb|1QFZ|B Chain B, Pea Fnr Y308s Mutant In Complex With Nadph
pdb|1QFY|B Chain B, Pea Fnr Y308s Mutant In Complex With Nadp+
Length = 308
Score = 26.9 bits (58), Expect = 9.7
Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 399 VSIPTNLAIKRKDLNDLIYKSEKEKF--DAVILKIKELHDKGQPVLVGTASIEKSETLHA 456
+ +PT+ ++ K+ + + + E F D + + ++++DKG+ + + T + +E L
Sbjct: 196 LGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR-EQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 457 LLKKE 461
LLKK+
Sbjct: 255 LLKKD 259
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.134 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,742,321
Number of Sequences: 13198
Number of extensions: 201158
Number of successful extensions: 431
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 35
length of query: 865
length of database: 2,899,336
effective HSP length: 96
effective length of query: 769
effective length of database: 1,632,328
effective search space: 1255260232
effective search space used: 1255260232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)