BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645407|ref|NP_207581.1| hypothetical protein
[Helicobacter pylori 26695]
(499 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A7O|L Chain L, Fv Fragment Of Mouse Monoclonal Antibod... 28 2.4
pdb|1QD6|C Chain C, Outer Membrane Phospholipase A From Esc... 27 6.9
pdb|1IM0|A Chain A, Outer Membrane Phospholipase A From Esc... 27 6.9
pdb|1FW3|A Chain A, Outer Membrane Phospholipase A From Esc... 27 6.9
pdb|1QD5|A Chain A, Outer Membrane Phospholipase A From Esc... 27 6.9
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv)... 26 9.0
>pdb|1A7O|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) R96L DELETION MUTANT ON VARIANT FOR Chain L
Glu81->asp And Chain H Leu312->val
Length = 106
Score = 28.1 bits (61), Expect = 2.4
Identities = 28/101 (27%), Positives = 41/101 (39%), Gaps = 24/101 (23%)
Query: 252 SPKTYTLKNGQTINPGVHAFYAIWNYKGW-------SIQPFVYFSPFNEYDPNFTITYDS 304
SP + + G+T+ A I NY W S Q VY++ T D
Sbjct: 7 SPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYT---------TTLADG 57
Query: 305 NPT-FTGLGFRSQTDVTV--LNP-----FYAKRFWDTYQFG 337
P+ F+G G +Q + + L P +Y + FW T FG
Sbjct: 58 VPSRFSGSGSGTQYSLKINSLQPDDFGSYYCQHFWSTPTFG 98
>pdb|1QD6|C Chain C, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1QD6|D Chain D, Outer Membrane Phospholipase A From Escherichia Coli
Length = 240
Score = 26.6 bits (57), Expect = 6.9
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 358 YNFGFGIYKSFGNANWMIGYHGNRLGFDF 386
Y+ G + + G NW GY G LG +
Sbjct: 172 YHLGDAVLSAKGQYNWNTGYGGAELGLSY 200
>pdb|1IM0|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 8.3
pdb|1ILZ|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 6.1
pdb|1ILD|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 4.6
Length = 275
Score = 26.6 bits (57), Expect = 6.9
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 358 YNFGFGIYKSFGNANWMIGYHGNRLGFDF 386
Y+ G + + G NW GY G LG +
Sbjct: 207 YHLGDAVLSAKGQYNWNTGYGGAELGLSY 235
>pdb|1FW3|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1FW3|B Chain B, Outer Membrane Phospholipase A From Escherichia Coli
Length = 275
Score = 26.6 bits (57), Expect = 6.9
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 358 YNFGFGIYKSFGNANWMIGYHGNRLGFDF 386
Y+ G + + G NW GY G LG +
Sbjct: 207 YHLGDAVLSAKGQYNWNTGYGGAELGLSY 235
>pdb|1QD5|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1FW2|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
Length = 275
Score = 26.6 bits (57), Expect = 6.9
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 358 YNFGFGIYKSFGNANWMIGYHGNRLGFDF 386
Y+ G + + G NW GY G LG +
Sbjct: 207 YHLGDAVLSAKGQYNWNTGYGGAELGLSY 235
>pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 26.2 bits (56), Expect = 9.0
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 185 VIYNAYLRYNYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRGFAYN 244
+ N YL Y Y ++ G P D+ G NQ + F+ + F G YN
Sbjct: 400 IALNDYLLYMYNTRVQVNYGPTGEPLDFQIGRNQ-----YDCNVFR----ADFATGTGYN 450
Query: 245 EW 246
W
Sbjct: 451 GW 452
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,383,869
Number of Sequences: 13198
Number of extensions: 160726
Number of successful extensions: 323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 6
length of query: 499
length of database: 2,899,336
effective HSP length: 92
effective length of query: 407
effective length of database: 1,685,120
effective search space: 685843840
effective search space used: 685843840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)