BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644710|ref|NP_206880.1| hypothetical protein
[Helicobacter pylori 26695]
         (593 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FMD|4  Chain 4, Foot And Mouth Disease Virus Type C-S8c...    27  4.9
pdb|1EAP|B  Chain B, 17e8 Complexed With Phenyl [1-(1-N-Succ...    27  4.9
pdb|1DT1|A  Chain A, Thermus Thermophilus Cytochrome C552 Sy...    27  8.4
pdb|1FOC|A  Chain A, Cytochrome C557: Improperly Folded Ther...    27  8.4
pdb|1C52|    Thermus Thermophilus Cytochrome-C552: A New Hig...    27  8.4
pdb|1JCH|A  Chain A, Crystal Structure Of Colicin E3 In Comp...    27  8.4

>pdb|1FMD|4 Chain 4, Foot And Mouth Disease Virus Type C-S8c1
 pdb|1FOD|4 Chain 4, Foot-And-Mouth Disease Virus (Reduced)
          Length = 85

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 483 STTDTPTDDKDASGLNNTGDMNNTDTGNTDTGNTD 517
           ++ DT   D   SG +N G  + T T  T+T N D
Sbjct: 32  NSMDTQLGDNAISGGSNEGSTDTTSTHTTNTQNND 66



>pdb|1EAP|B Chain B, 17e8 Complexed With Phenyl [1-(1-N-Succinylamino)pentyl]
           Phosphonate
          Length = 216

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 134 KTAQKMLADLSVVGAYLKKQQENEKAQSPYYRNNNYYNSYYSPYYG 179
           K    + AD S   AY++      +  + Y+   +YY S Y  Y+G
Sbjct: 65  KVKATLTADQSSSTAYMQLNSLTSEDSAVYFCKRSYYGSSYVDYWG 110



>pdb|1DT1|A Chain A, Thermus Thermophilus Cytochrome C552 Synthesized By
          Escherichia Coli
          Length = 129

 Score = 26.6 bits (57), Expect = 8.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 31 LKGELTPKIVNFGGYKSS----TEEWGATALNYINAANGDAKK 69
          L+G++  K + + G  SS     +E  A  LN+I  A GDAKK
Sbjct: 52 LQGQIEVKGMKYNGVMSSFAQLKDEEIAAVLNHIATAWGDAKK 94



>pdb|1FOC|A Chain A, Cytochrome C557: Improperly Folded Thermus Thermophilus
          C552
 pdb|1FOC|B Chain B, Cytochrome C557: Improperly Folded Thermus Thermophilus
          C552
          Length = 132

 Score = 26.6 bits (57), Expect = 8.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 31 LKGELTPKIVNFGGYKSS----TEEWGATALNYINAANGDAKK 69
          L+G++  K + + G  SS     +E  A  LN+I  A GDAKK
Sbjct: 55 LQGQIEVKGMKYNGVMSSFAQLKDEEIAAVLNHIATAWGDAKK 97



>pdb|1C52|   Thermus Thermophilus Cytochrome-C552: A New Highly Thermostable
          Cytochrome-C Structure Obtained By Mad Phasing
          Length = 131

 Score = 26.6 bits (57), Expect = 8.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 31 LKGELTPKIVNFGGYKSS----TEEWGATALNYINAANGDAKK 69
          L+G++  K + + G  SS     +E  A  LN+I  A GDAKK
Sbjct: 54 LQGQIEVKGMKYNGVMSSFAQLKDEEIAAVLNHIATAWGDAKK 96



>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
           Immunity Protein
 pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
           Immunity Protein
          Length = 551

 Score = 26.6 bits (57), Expect = 8.4
 Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 2/44 (4%)

Query: 333 KEMKQDGASPSK--IDSVVNKAMEVRDKLDNNLNQLDNDLKDQK 374
           K+   D A+  K   D+ ++ AME R K ++     +N+L D+K
Sbjct: 407 KQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEK 450



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.311    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,898,403
Number of Sequences: 13198
Number of extensions: 192660
Number of successful extensions: 337
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 10
length of query: 593
length of database: 2,899,336
effective HSP length: 93
effective length of query: 500
effective length of database: 1,671,922
effective search space: 835961000
effective search space used: 835961000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)