BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645408|ref|NP_207582.1| hypothetical protein
[Helicobacter pylori 26695]
(48 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1AQ3|A Chain A, Structure Of A Ms2 Coat Protein Mutant ... 26 1.1
pdb|1E6T|A Chain A, Ms2-Rna Hairpin (5bru -5) Complex >gi|1... 26 1.1
pdb|1BMS|A Chain A, Mol_id: 1; Molecule: Bacteriophage Ms2 ... 26 1.1
pdb|1MSC| Bacteriophage Ms2 Unassembled Coat Protein Dime... 26 1.1
pdb|1AQ4|A Chain A, Structure Of A Ms2 Coat Protein Mutant ... 26 1.1
pdb|1MST|A Chain A, Mol_id: 1; Molecule: Bacteriophage Ms2 ... 26 1.1
pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The... 25 2.4
pdb|1FRS|A Chain A, Mol_id: 1; Molecule: Bacteriophage Fr C... 24 4.0
pdb|1FR5|A Chain A, Phage Fr Capsids With A Four Residue De... 24 4.0
pdb|1UNA|A Chain A, Unassembled Virus Coat Protein Dimer, B... 23 6.9
pdb|1GAV|! Chain !, Bacteriophage Ga Protein Capsid >gi|255... 23 6.9
>pdb|1AQ3|A Chain A, Structure Of A Ms2 Coat Protein Mutant In Complex With
An Rna Operator
pdb|1AQ3|B Chain B, Structure Of A Ms2 Coat Protein Mutant In Complex With
An Rna Operator
pdb|1AQ3|C Chain C, Structure Of A Ms2 Coat Protein Mutant In Complex With
An Rna Operator
pdb|1MVB|A Chain A, Structure Of A Protein Capsid Of The T59s Mutant Of
Phage Ms2
pdb|1MVB|B Chain B, Structure Of A Protein Capsid Of The T59s Mutant Of
Phage Ms2
pdb|1MVB|C Chain C, Structure Of A Protein Capsid Of The T59s Mutant Of
Phage Ms2
Length = 129
Score = 25.8 bits (55), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 5 TIAESNESTVVAEFHSNNERKSAYE 29
T+A SN + VAE+ S+N R AY+
Sbjct: 19 TVAPSNFANGVAEWISSNSRSQAYK 43
>pdb|1E6T|A Chain A, Ms2-Rna Hairpin (5bru -5) Complex
pdb|1E6T|B Chain B, Ms2-Rna Hairpin (5bru -5) Complex
pdb|1E6T|C Chain C, Ms2-Rna Hairpin (5bru -5) Complex
pdb|1E7X|A Chain A, Ms2-Rna Hairpin (2one -5) Complex
pdb|1E7X|B Chain B, Ms2-Rna Hairpin (2one -5) Complex
pdb|1E7X|C Chain C, Ms2-Rna Hairpin (2one -5) Complex
pdb|1GKW|A Chain A, Ms2-Rna Hairpin (G-10) Complex
pdb|1GKW|B Chain B, Ms2-Rna Hairpin (G-10) Complex
pdb|1GKW|C Chain C, Ms2-Rna Hairpin (G-10) Complex
pdb|1HDW|A Chain A, Ms2-Rna Hairpin (2thio-U -5-6) Complex
pdb|1HDW|B Chain B, Ms2-Rna Hairpin (2thio-U -5-6) Complex
pdb|1HDW|C Chain C, Ms2-Rna Hairpin (2thio-U -5-6) Complex
pdb|1HE6|A Chain A, Ms2-Rna Hairpin (Ade-5) Virus Complex
pdb|1HE6|B Chain B, Ms2-Rna Hairpin (Ade-5) Virus Complex
pdb|1HE6|C Chain C, Ms2-Rna Hairpin (Ade-5) Virus Complex
pdb|1HE0|A Chain A, Ms2-Rna Hairpin (2thiouracil-5) Complex
pdb|1HE0|B Chain B, Ms2-Rna Hairpin (2thiouracil-5) Complex
pdb|1HE0|C Chain C, Ms2-Rna Hairpin (2thiouracil-5) Complex
pdb|1KUO|A Chain A, Ms2-Rna Hairpin (C-10) Complex
pdb|1KUO|B Chain B, Ms2-Rna Hairpin (C-10) Complex
pdb|1KUO|C Chain C, Ms2-Rna Hairpin (C-10) Complex
pdb|1ZDH|A Chain A, Structure Of Bacteriophage Coat Protein-Operator Complex
pdb|1ZDH|B Chain B, Structure Of Bacteriophage Coat Protein-Operator Complex
pdb|1ZDH|C Chain C, Structure Of Bacteriophage Coat Protein-Operator Complex
pdb|1ZDI|A Chain A, Structure Of Ms2 Protein Capsid
pdb|1ZDI|B Chain B, Structure Of Ms2 Protein Capsid
pdb|1ZDI|C Chain C, Structure Of Ms2 Protein Capsid
pdb|1H8J|A Chain A, Ms2-Rna Hairpin (G-5) Complex
pdb|1H8J|B Chain B, Ms2-Rna Hairpin (G-5) Complex
pdb|1H8J|C Chain C, Ms2-Rna Hairpin (G-5) Complex
pdb|5MSF|A Chain A, F5 Aptamer Ms2 Coat Protein Complex
pdb|5MSF|B Chain B, F5 Aptamer Ms2 Coat Protein Complex
pdb|5MSF|C Chain C, F5 Aptamer Ms2 Coat Protein Complex
pdb|6MSF|A Chain A, F6 Aptamer Ms2 Coat Protein Complex
pdb|6MSF|B Chain B, F6 Aptamer Ms2 Coat Protein Complex
pdb|6MSF|C Chain C, F6 Aptamer Ms2 Coat Protein Complex
pdb|7MSF|A Chain A, F7 Aptamer Ms2 Coat Protein Complex
pdb|7MSF|B Chain B, F7 Aptamer Ms2 Coat Protein Complex
pdb|7MSF|C Chain C, F7 Aptamer Ms2 Coat Protein Complex
pdb|2MS2|A Chain A, Ms2 Virus (Bacteriophage)
pdb|2MS2|B Chain B, Ms2 Virus (Bacteriophage)
pdb|2MS2|C Chain C, Ms2 Virus (Bacteriophage)
pdb|1DZS|A Chain A, Ms2-Rna Hairpin (4one -5) Complex
pdb|1DZS|B Chain B, Ms2-Rna Hairpin (4one -5) Complex
pdb|1DZS|C Chain C, Ms2-Rna Hairpin (4one -5) Complex
pdb|1ZDK|A Chain A, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
pdb|1ZDK|B Chain B, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
pdb|1ZDK|C Chain C, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
pdb|1ZDJ|A Chain A, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
pdb|1ZDJ|B Chain B, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
pdb|1ZDJ|C Chain C, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
pdb|1GKV|A Chain A, Ms2-Rna Hairpin (C-7) Complex
pdb|1GKV|B Chain B, Ms2-Rna Hairpin (C-7) Complex
pdb|1GKV|C Chain C, Ms2-Rna Hairpin (C-7) Complex
Length = 129
Score = 25.8 bits (55), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 5 TIAESNESTVVAEFHSNNERKSAYE 29
T+A SN + VAE+ S+N R AY+
Sbjct: 19 TVAPSNFANGVAEWISSNSRSQAYK 43
>pdb|1BMS|A Chain A, Mol_id: 1; Molecule: Bacteriophage Ms2 Capsid; Chain: A,
B, C; Engineered: Yes; Mutation: P78n
pdb|1BMS|B Chain B, Mol_id: 1; Molecule: Bacteriophage Ms2 Capsid; Chain: A,
B, C; Engineered: Yes; Mutation: P78n
pdb|1BMS|C Chain C, Mol_id: 1; Molecule: Bacteriophage Ms2 Capsid; Chain: A,
B, C; Engineered: Yes; Mutation: P78n
Length = 129
Score = 25.8 bits (55), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 5 TIAESNESTVVAEFHSNNERKSAYE 29
T+A SN + VAE+ S+N R AY+
Sbjct: 19 TVAPSNFANGVAEWISSNSRSQAYK 43
>pdb|1MSC| Bacteriophage Ms2 Unassembled Coat Protein Dimer (Translational
Repressor, Assembly-Defective) Mutant With Trp 82
Replaced By Arg (W82r)
Length = 129
Score = 25.8 bits (55), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 5 TIAESNESTVVAEFHSNNERKSAYE 29
T+A SN + VAE+ S+N R AY+
Sbjct: 19 TVAPSNFANGVAEWISSNSRSQAYK 43
>pdb|1AQ4|A Chain A, Structure Of A Ms2 Coat Protein Mutant In Complex With
An Rna Operator
pdb|1AQ4|B Chain B, Structure Of A Ms2 Coat Protein Mutant In Complex With
An Rna Operator
pdb|1AQ4|C Chain C, Structure Of A Ms2 Coat Protein Mutant In Complex With
An Rna Operator
pdb|1MVA|A Chain A, Structure Of A Protein Capsid Of The T45a Mutant Of
Phage Ms2
pdb|1MVA|B Chain B, Structure Of A Protein Capsid Of The T45a Mutant Of
Phage Ms2
pdb|1MVA|C Chain C, Structure Of A Protein Capsid Of The T45a Mutant Of
Phage Ms2
Length = 129
Score = 25.8 bits (55), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 5 TIAESNESTVVAEFHSNNERKSAYE 29
T+A SN + VAE+ S+N R AY+
Sbjct: 19 TVAPSNFANGVAEWISSNSRSQAYK 43
>pdb|1MST|A Chain A, Mol_id: 1; Molecule: Bacteriophage Ms2 Capsid; Chain: A,
B, C; Engineered: Yes; Mutation: E76d
pdb|1MST|B Chain B, Mol_id: 1; Molecule: Bacteriophage Ms2 Capsid; Chain: A,
B, C; Engineered: Yes; Mutation: E76d
pdb|1MST|C Chain C, Mol_id: 1; Molecule: Bacteriophage Ms2 Capsid; Chain: A,
B, C; Engineered: Yes; Mutation: E76d
Length = 129
Score = 25.8 bits (55), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 5 TIAESNESTVVAEFHSNNERKSAYE 29
T+A SN + VAE+ S+N R AY+
Sbjct: 19 TVAPSNFANGVAEWISSNSRSQAYK 43
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 24.6 bits (52), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 11 ESTVVAEFHSNNERKSAYESEAEL 34
E+T + H NN R SAYES E+
Sbjct: 512 ETTDRPDGHQNNLRSSAYESLMEI 535
>pdb|1FRS|A Chain A, Mol_id: 1; Molecule: Bacteriophage Fr Capsid; Chain: A,
B, C; Engineered: Yes
pdb|1FRS|B Chain B, Mol_id: 1; Molecule: Bacteriophage Fr Capsid; Chain: A,
B, C; Engineered: Yes
pdb|1FRS|C Chain C, Mol_id: 1; Molecule: Bacteriophage Fr Capsid; Chain: A,
B, C; Engineered: Yes
Length = 129
Score = 23.9 bits (50), Expect = 4.0
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 6 IAESNESTVVAEFHSNNERKSAYE 29
+A SN + VAE+ S+N R AY+
Sbjct: 20 VAPSNFANGVAEWISSNSRSQAYK 43
>pdb|1FR5|A Chain A, Phage Fr Capsids With A Four Residue Deletion In The
Coat Protein Fg Loop
pdb|1FR5|C Chain C, Phage Fr Capsids With A Four Residue Deletion In The
Coat Protein Fg Loop
pdb|1FR5|B Chain B, Phage Fr Capsids With A Four Residue Deletion In The
Coat Protein Fg Loop
Length = 125
Score = 23.9 bits (50), Expect = 4.0
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 6 IAESNESTVVAEFHSNNERKSAYE 29
+A SN + VAE+ S+N R AY+
Sbjct: 20 VAPSNFANGVAEWISSNSRSQAYK 43
>pdb|1UNA|A Chain A, Unassembled Virus Coat Protein Dimer, Bacteriophage Rna-
Binding Dimer
pdb|1UNA|B Chain B, Unassembled Virus Coat Protein Dimer, Bacteriophage Rna-
Binding Dimer
Length = 129
Score = 23.1 bits (48), Expect = 6.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 5 TIAESNESTVVAEFHSNNERKSAYESEA 32
T+ + + VAE+ SNN R AY A
Sbjct: 18 TVVPVSNANGVAEWLSNNSRSQAYRVTA 45
>pdb|1GAV|! Chain !, Bacteriophage Ga Protein Capsid
pdb|1GAV|# Chain #, Bacteriophage Ga Protein Capsid
pdb|1GAV|- Chain -, Bacteriophage Ga Protein Capsid
pdb|1GAV|0 Chain 0, Bacteriophage Ga Protein Capsid
pdb|1GAV|1 Chain 1, Bacteriophage Ga Protein Capsid
pdb|1GAV|2 Chain 2, Bacteriophage Ga Protein Capsid
pdb|1GAV|3 Chain 3, Bacteriophage Ga Protein Capsid
pdb|1GAV|4 Chain 4, Bacteriophage Ga Protein Capsid
pdb|1GAV|5 Chain 5, Bacteriophage Ga Protein Capsid
pdb|1GAV|6 Chain 6, Bacteriophage Ga Protein Capsid
pdb|1GAV|7 Chain 7, Bacteriophage Ga Protein Capsid
pdb|1GAV|8 Chain 8, Bacteriophage Ga Protein Capsid
pdb|1GAV|9 Chain 9, Bacteriophage Ga Protein Capsid
pdb|1GAV|: Chain :, Bacteriophage Ga Protein Capsid
pdb|1GAV|< Chain <, Bacteriophage Ga Protein Capsid
pdb|1GAV|= Chain =, Bacteriophage Ga Protein Capsid
pdb|1GAV|> Chain >, Bacteriophage Ga Protein Capsid
pdb|1GAV|A Chain A, Bacteriophage Ga Protein Capsid
pdb|1GAV|B Chain B, Bacteriophage Ga Protein Capsid
pdb|1GAV|C Chain C, Bacteriophage Ga Protein Capsid
pdb|1GAV|D Chain D, Bacteriophage Ga Protein Capsid
pdb|1GAV|E Chain E, Bacteriophage Ga Protein Capsid
pdb|1GAV|F Chain F, Bacteriophage Ga Protein Capsid
pdb|1GAV|G Chain G, Bacteriophage Ga Protein Capsid
pdb|1GAV|H Chain H, Bacteriophage Ga Protein Capsid
pdb|1GAV|I Chain I, Bacteriophage Ga Protein Capsid
pdb|1GAV|J Chain J, Bacteriophage Ga Protein Capsid
pdb|1GAV|K Chain K, Bacteriophage Ga Protein Capsid
pdb|1GAV|L Chain L, Bacteriophage Ga Protein Capsid
pdb|1GAV|M Chain M, Bacteriophage Ga Protein Capsid
pdb|1GAV|N Chain N, Bacteriophage Ga Protein Capsid
pdb|1GAV|O Chain O, Bacteriophage Ga Protein Capsid
pdb|1GAV|P Chain P, Bacteriophage Ga Protein Capsid
pdb|1GAV|Q Chain Q, Bacteriophage Ga Protein Capsid
pdb|1GAV|R Chain R, Bacteriophage Ga Protein Capsid
pdb|1GAV|S Chain S, Bacteriophage Ga Protein Capsid
pdb|1GAV|T Chain T, Bacteriophage Ga Protein Capsid
pdb|1GAV|U Chain U, Bacteriophage Ga Protein Capsid
pdb|1GAV|V Chain V, Bacteriophage Ga Protein Capsid
pdb|1GAV|W Chain W, Bacteriophage Ga Protein Capsid
pdb|1GAV|X Chain X, Bacteriophage Ga Protein Capsid
pdb|1GAV|Y Chain Y, Bacteriophage Ga Protein Capsid
pdb|1GAV|Z Chain Z, Bacteriophage Ga Protein Capsid
pdb|1GAV|_ Chain _, Bacteriophage Ga Protein Capsid
pdb|1GAV|VB Chain |, Bacteriophage Ga Protein Capsid
Length = 129
Score = 23.1 bits (48), Expect = 6.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 5 TIAESNESTVVAEFHSNNERKSAYESEA 32
T+ + + VAE+ SNN R AY A
Sbjct: 18 TVVPVSNANGVAEWLSNNSRSQAYRVTA 45
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.303 0.118 0.285
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,811
Number of Sequences: 13198
Number of extensions: 3480
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 11
length of query: 48
length of database: 2,899,336
effective HSP length: 24
effective length of query: 24
effective length of database: 2,582,584
effective search space: 61982016
effective search space used: 61982016
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.7 bits)