BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645412|ref|NP_207586.1| polypeptide deformylase
(def) [Helicobacter pylori 26695]
(174 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Pept... 134 7e-33
pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Def... 125 3e-30
pdb|1DFF| Peptide Deformylase 125 3e-30
pdb|2DEF| Peptide Deformylase Catalytic Core (Residues 1 ... 118 3e-28
pdb|1DEF| Peptide Deformylase Catalytic Core (Residues 1 ... 117 7e-28
pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Pl... 84 9e-18
pdb|1LQY|A Chain A, Crystal Structure Of Bacillus Stearothe... 65 4e-12
pdb|1LQW|A Chain A, Crystal Structure Of S.Aureus Peptide D... 57 9e-10
pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus Peptide ... 54 8e-09
pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subu... 27 1.7
pdb|1EG5|B Chain B, Nifs-Like Protein >gi|7546280|pdb|1EG5|... 25 4.9
pdb|1ECX|B Chain B, Nifs-Like Protein >gi|7546479|pdb|1ECX|... 25 4.9
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 25 6.4
pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Inte... 25 6.4
pdb|1AUP| Glutamate Dehydrogenase 25 6.4
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 25 6.4
pdb|1BRW|B Chain B, The Crystal Structure Of Pyrimidine Nuc... 25 6.4
pdb|1K89| K89l Mutant Of Glutamate Dehydrogenase 25 6.4
pdb|1BGV|A Chain A, Glutamate Dehydrogenase >gi|1942184|pdb... 25 6.4
>pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 167
Score = 134 bits (336), Expect = 7e-33
Identities = 78/171 (45%), Positives = 107/171 (61%), Gaps = 6/171 (3%)
Query: 2 ALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLII 61
A+L I+ +P LRTI+K V D + Q +DDM ETM + GIGLAA QV + R++++
Sbjct: 1 AILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVM 60
Query: 62 NLPQEDGVQHKEDCLEIINPKFIETGGSM-MYREGCLSVPGFYEEVERFEKVKIEYQNRF 120
+L ++ K + INP+F M Y+EGCLSVPGFYE V+R +KV+I+ +R
Sbjct: 61 DLSED-----KSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRD 115
Query: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171
A LLAV IQHE DHLNG LFVD LS LKR + K+L++ ++Q
Sbjct: 116 GNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 166
>pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Deformylase Complexed
With Antibiotic Actinonin
pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide Deformylase Complexed
With Antibiotic Actinonin
pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide Deformylase Complexed
With Antibiotic Actinonin
pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+ Containing Form,
Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+ Containing Form,
Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+ Containing Form,
Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+ Containing Form
pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+ Containing Form
pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+ Containing Form
pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+ Containing Form
pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+ Containing Form
pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+ Containing Form
pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex From E.Coli
pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex From E.Coli
pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli Peptide Deformylase
Complexed With Actinonin
pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli Peptide Deformylase
Complexed With Actinonin
pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli Peptide Deformylase
Complexed With Actinonin
pdb|1G27|A Chain A, Crystal Structure Of E.Coli Polypeptide Deformylase
Complexed With The Inhibitor Bb-3497
pdb|1G27|B Chain B, Crystal Structure Of E.Coli Polypeptide Deformylase
Complexed With The Inhibitor Bb-3497
pdb|1G27|C Chain C, Crystal Structure Of E.Coli Polypeptide Deformylase
Complexed With The Inhibitor Bb-3497
Length = 168
Score = 125 bits (314), Expect = 3e-30
Identities = 67/168 (39%), Positives = 110/168 (64%), Gaps = 5/168 (2%)
Query: 2 ALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLII 61
++L+++H P + LR ++K V ++++ + +DDM ETM A EGIGLAA QV + R+++I
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 NLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRFA 121
++ + ++++ L +INP+ +E G EGCLS+P V R EKVKI +R
Sbjct: 61 DVSE-----NRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDG 115
Query: 122 EVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169
+ LEA LLA+ IQHE+DHL G LF+D LS LK+++ +++++L +
Sbjct: 116 KPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDR 163
>pdb|1DFF| Peptide Deformylase
Length = 164
Score = 125 bits (314), Expect = 3e-30
Identities = 67/168 (39%), Positives = 110/168 (64%), Gaps = 5/168 (2%)
Query: 2 ALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLII 61
++L+++H P + LR ++K V ++++ + +DDM ETM A EGIGLAA QV + R+++I
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 NLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRFA 121
++ + ++++ L +INP+ +E G EGCLS+P V R EKVKI +R
Sbjct: 61 DVSE-----NRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDG 115
Query: 122 EVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQK 169
+ LEA LLA+ IQHE+DHL G LF+D LS LK+++ +++++L +
Sbjct: 116 KPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDR 163
>pdb|2DEF| Peptide Deformylase Catalytic Core (Residues 1 - 147), Nmr, 20
Structures
Length = 147
Score = 118 bits (296), Expect = 3e-28
Identities = 65/152 (42%), Positives = 98/152 (63%), Gaps = 5/152 (3%)
Query: 2 ALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLII 61
A+L+++H P + LR ++K V ++++ + +DDM ETM A EGIGLAA QV + R+++I
Sbjct: 1 AVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 NLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRFA 121
++ + ++++ L +INP+ +E G EGCLS+P V R EKVKI +R
Sbjct: 61 DVSE-----NRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDG 115
Query: 122 EVKVLEASELLAVAIQHEIDHLNGVLFVDKLS 153
+ LEA LLA+ IQHE+DHL G LF+D LS
Sbjct: 116 KPFELEADGLLAICIQHEMDHLVGKLFMDYLS 147
>pdb|1DEF| Peptide Deformylase Catalytic Core (Residues 1 - 147), Nmr, 9
Structures
Length = 147
Score = 117 bits (293), Expect = 7e-28
Identities = 64/152 (42%), Positives = 98/152 (64%), Gaps = 5/152 (3%)
Query: 2 ALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLII 61
++L+++H P + LR ++K V ++++ + +DDM ETM A EGIGLAA QV + R+++I
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 NLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRFA 121
++ + ++++ L +INP+ +E G EGCLS+P V R EKVKI +R
Sbjct: 61 DVSE-----NRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDG 115
Query: 122 EVKVLEASELLAVAIQHEIDHLNGVLFVDKLS 153
+ LEA LLA+ IQHE+DHL G LF+D LS
Sbjct: 116 KPFELEADGLLAICIQHEMDHLVGKLFMDYLS 147
>pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
Length = 183
Score = 84.0 bits (206), Expect = 9e-18
Identities = 61/172 (35%), Positives = 90/172 (51%), Gaps = 9/172 (5%)
Query: 4 LEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINL 63
++I+ YP ILR S EV +FD L + + + S+GIGL+A QV + R+++ N
Sbjct: 3 IKIVKYPDPILRRRS-EVTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNA 61
Query: 64 PQEDGVQHKEDCLEIINPKFIETG-GSMMYREGCLSVPGFYEEVERFEKVKIEYQ--NRF 120
E + E INP +E + EGCLS G +VER V I Y N +
Sbjct: 62 LYEKRKEENERIF--INPSIVEQSLVKLKLIEGCLSF-GIEGKVERPSIVSISYYDINGY 118
Query: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQK 172
+K+L+ + + QHE DHLNG LF+DK + + +KK +L EL + K
Sbjct: 119 KHLKILKG--IHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIRDYK 168
>pdb|1LQY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Peptide
Deformylase Complexed With Antibiotic Actinonin
Length = 184
Score = 65.1 bits (157), Expect = 4e-12
Identities = 40/117 (34%), Positives = 61/117 (51%), Gaps = 13/117 (11%)
Query: 44 GIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINPKFIETGGSMMYR---EGCLSV- 99
GIGLAA Q+ + RM+ +++ E+G + + NPK + Y EGCLSV
Sbjct: 58 GIGLAAPQINVSKRMIAVHVTDENGTLYS---YALFNPKIVSHSVQQCYLTTGEGCLSVD 114
Query: 100 ---PGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLS 153
PG+ V R+ ++ + E L L A+ QHEIDHLNG++F D+++
Sbjct: 115 RDVPGY---VLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRIN 168
>pdb|1LQW|A Chain A, Crystal Structure Of S.Aureus Peptide Deformylase
pdb|1LQW|B Chain B, Crystal Structure Of S.Aureus Peptide Deformylase
Length = 183
Score = 57.4 bits (137), Expect = 9e-10
Identities = 39/113 (34%), Positives = 58/113 (50%), Gaps = 6/113 (5%)
Query: 44 GIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINPKFIETGGSMMYR---EGCLSVP 100
G+GLAA Q+ + RM+ + +P +DG D + ++NPK + Y EGCLSV
Sbjct: 58 GVGLAAPQINISKRMIAVLIP-DDGSGKSYDYM-LVNPKIVSHSVQEAYLPTGEGCLSVD 115
Query: 101 GFYEE-VERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKL 152
V R ++ I+ ++ L A+ QHEIDHLNGV+F D +
Sbjct: 116 DNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHI 168
>pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus Peptide Deformylase
Length = 184
Score = 54.3 bits (129), Expect = 8e-09
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 44 GIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINPKFIETGGSMMYR---EGCLSVP 100
G+GLAA Q+ + R + + +P +DG D ++NPK + Y EGCLSV
Sbjct: 58 GVGLAAPQINISKRXIAVLIP-DDGSGKSYD-YXLVNPKIVSHSVQEAYLPTGEGCLSVD 115
Query: 101 GFYEE-VERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKL 152
V R K+ I+ ++ L A+ QHEIDHLNGV F D +
Sbjct: 116 DNVAGLVHRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVXFYDHI 168
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 26.6 bits (57), Expect = 1.7
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 48 AAIQVGLPLRMLIINLPQEDGV--------QHKEDCLEIINPKFIETGGSM 90
+A+Q G P+++LI+N ++ V +H+ +NP FI+ +M
Sbjct: 505 SAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM 555
>pdb|1EG5|B Chain B, Nifs-Like Protein
pdb|1EG5|A Chain A, Nifs-Like Protein
Length = 384
Score = 25.0 bits (53), Expect = 4.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 43 EGIGLAAIQVGLPLRMLIINLPQEDGVQ 70
+G+G+ I+ G+P+R LI QE G++
Sbjct: 208 KGVGITYIRKGVPIRPLIHGGGQERGLR 235
>pdb|1ECX|B Chain B, Nifs-Like Protein
pdb|1ECX|A Chain A, Nifs-Like Protein
Length = 384
Score = 25.0 bits (53), Expect = 4.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 43 EGIGLAAIQVGLPLRMLIINLPQEDGVQ 70
+G+G+ I+ G+P+R LI QE G++
Sbjct: 208 KGVGITYIRKGVPIRPLIHGGGQERGLR 235
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 24.6 bits (52), Expect = 6.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 147 LFVDKLSILKRKKFEKELKELQKKQ 171
LFV KL LK+K +E+ K +Q ++
Sbjct: 435 LFVQKLQDLKKKYYEEPRKGIQAEE 459
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A
Regulator Of G Protein Signaling
Length = 152
Score = 24.6 bits (52), Expect = 6.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 126 LEASELLAVAIQHEIDHLNGVLFVDKLSILKRKK 159
L EL A A QH +D +++ D +SIL K+
Sbjct: 54 LACEELKAEANQHVVDEKARLIYEDYVSILSPKE 87
>pdb|1AUP| Glutamate Dehydrogenase
Length = 449
Score = 24.6 bits (52), Expect = 6.4
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 25 DSKLHQQLDDMHE-TMIASEGIGL 47
DSKLHQ + D+H+ + A+E GL
Sbjct: 399 DSKLHQVMTDIHDGSAAAAERYGL 422
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 24.6 bits (52), Expect = 6.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 151 KLSILKRKKFEKELKELQKK 170
KL + KK EKELKEL++K
Sbjct: 28 KLFLKLLKKQEKELKELERK 47
>pdb|1BRW|B Chain B, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
pdb|1BRW|A Chain A, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
Length = 433
Score = 24.6 bits (52), Expect = 6.4
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 86 TGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRFA 121
TGG++ E SVPGF+ E+ + E +++ +N A
Sbjct: 117 TGGTIDKLE---SVPGFHVEISKDEFIRLVNENGIA 149
>pdb|1K89| K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 24.6 bits (52), Expect = 6.4
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 25 DSKLHQQLDDMHE-TMIASEGIGL 47
DSKLHQ + D+H+ + A+E GL
Sbjct: 399 DSKLHQVMTDIHDGSAAAAERYGL 422
>pdb|1BGV|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
Length = 449
Score = 24.6 bits (52), Expect = 6.4
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 25 DSKLHQQLDDMHE-TMIASEGIGL 47
DSKLHQ + D+H+ + A+E GL
Sbjct: 399 DSKLHQVMTDIHDGSAAAAERYGL 422
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 918,084
Number of Sequences: 13198
Number of extensions: 34106
Number of successful extensions: 103
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 19
length of query: 174
length of database: 2,899,336
effective HSP length: 82
effective length of query: 92
effective length of database: 1,817,100
effective search space: 167173200
effective search space used: 167173200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)