BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645413|ref|NP_207587.1| ATP-dependent clp protease
proteolytic component (clpP) [Helicobacter pylori 26695]
(196 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom R... 275 3e-75
pdb|7AHL|B Chain B, Alpha-Hemolysin From Staphylococcus Aur... 26 2.7
pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-... 26 3.5
pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a M... 26 3.5
pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi 26 3.5
pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f M... 26 3.5
pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l ... 26 3.5
pdb|1ESP| Neutral Protease Mutant E144s 25 4.6
pdb|1NPC| Neutral Protease (E.C.3.4.24.27) 25 4.6
pdb|3TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex Wit... 25 7.8
pdb|1AOA| N-Terminal Actin-Crosslinking Domain From Human... 25 7.8
pdb|1L3F|E Chain E, Thermolysin In The Absence Of Substrate... 25 7.8
pdb|1THL| Thermolysin (E.C.3.4.24.27) Complexed With A No... 25 7.8
>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
Length = 193
Score = 275 bits (703), Expect = 3e-75
Identities = 132/187 (70%), Positives = 165/187 (87%)
Query: 5 IPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLY 64
+P VIE T RGERS+DIYSRLLK+R++ L+G++ D +A+ IVAQ+LFLEAE+PEKDI LY
Sbjct: 3 VPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLY 62
Query: 65 INSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIH 124
INSPGGVIT+G+SIYDTM FI+PDVSTIC+GQAASMGAFLL+ GAKGKRF LP+SR+MIH
Sbjct: 63 INSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIH 122
Query: 125 QPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEY 184
QPLGG QGQA+DIEI + EIL++KG MN ++A ++GQSLEQI +DT+RD ++SA EA EY
Sbjct: 123 QPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEY 182
Query: 185 GLIDKVL 191
GL+D +L
Sbjct: 183 GLVDSIL 189
>pdb|7AHL|B Chain B, Alpha-Hemolysin From Staphylococcus Aureus
pdb|7AHL|C Chain C, Alpha-Hemolysin From Staphylococcus Aureus
pdb|7AHL|E Chain E, Alpha-Hemolysin From Staphylococcus Aureus
pdb|7AHL|F Chain F, Alpha-Hemolysin From Staphylococcus Aureus
pdb|7AHL|G Chain G, Alpha-Hemolysin From Staphylococcus Aureus
pdb|7AHL|A Chain A, Alpha-Hemolysin From Staphylococcus Aureus
pdb|7AHL|D Chain D, Alpha-Hemolysin From Staphylococcus Aureus
Length = 293
Score = 26.2 bits (56), Expect = 2.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 69 GGVITSGLSIYDTMNFIRPDVSTI 92
GG+I + +SI T+ +++PD TI
Sbjct: 133 GGLIGANVSIGHTLKYVQPDFKTI 156
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 25.8 bits (55), Expect = 3.5
Identities = 11/41 (26%), Positives = 22/41 (52%)
Query: 142 NEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAK 182
++I ++ L + + +G S+ +TDRDFY + +K
Sbjct: 232 DDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSK 272
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 25.8 bits (55), Expect = 3.5
Identities = 11/41 (26%), Positives = 22/41 (52%)
Query: 142 NEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAK 182
++I ++ L + + +G S+ +TDRDFY + +K
Sbjct: 249 DDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSK 289
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 25.8 bits (55), Expect = 3.5
Identities = 11/41 (26%), Positives = 22/41 (52%)
Query: 142 NEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAK 182
++I ++ L + + +G S+ +TDRDFY + +K
Sbjct: 249 DDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSK 289
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 25.8 bits (55), Expect = 3.5
Identities = 11/41 (26%), Positives = 22/41 (52%)
Query: 142 NEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAK 182
++I ++ L + + +G S+ +TDRDFY + +K
Sbjct: 249 DDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSK 289
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 25.8 bits (55), Expect = 3.5
Identities = 11/41 (26%), Positives = 22/41 (52%)
Query: 142 NEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAK 182
++I ++ L + + +G S+ +TDRDFY + +K
Sbjct: 232 DDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSK 272
>pdb|1ESP| Neutral Protease Mutant E144s
Length = 317
Score = 25.4 bits (54), Expect = 4.6
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 34 SGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPD 88
SG +N++++ + F + +P+ +IG I +PG + S+ D + PD
Sbjct: 162 SGALNEAISDIFGTLVEFYDNRNPDWEIGEDIYTPGKAGDALRSMSDPTKYGDPD 216
>pdb|1NPC| Neutral Protease (E.C.3.4.24.27)
Length = 317
Score = 25.4 bits (54), Expect = 4.6
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 34 SGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPD 88
SG +N++++ + F + +P+ +IG I +PG + S+ D + PD
Sbjct: 162 SGALNEAISDIFGTLVEFYDNRNPDWEIGEDIYTPGKAGDALRSMSDPTKYGDPD 216
>pdb|3TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With Val-Trp (Vw)
pdb|1LNA|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Cobalt
Length = 316
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 34 SGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPD 88
SG IN++++ + F ++P+ +IG + +PG S S+ D + PD
Sbjct: 161 SGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPD 215
>pdb|1AOA| N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 24.6 bits (52), Expect = 7.8
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 84 FIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI-MIHQPLGGAQGQASDIEIISN 142
FI + + + A+++G +++ GA+ R PH + ++ Q + G +DIE+ N
Sbjct: 91 FIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQII--KIGLFADIELSRN 148
Query: 143 EILRLKGLMNSILAQNSGQSLEQIAK 168
E L G++LE++ K
Sbjct: 149 EAL--------AALLRDGETLEELMK 166
>pdb|1L3F|E Chain E, Thermolysin In The Absence Of Substrate Has An Open
Conformation
pdb|8TLN|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Val-Lys
Dipeptide
pdb|2TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With
N-Phosphoryl-L-Leucinamide (P-Leu-NH2)
pdb|5TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With Cbz-Glyp-Leu-Leu
(Zgpll)
pdb|6TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With
Cbz-Glyp-(O)-Leu-Leu (Zgp(O)ll)
pdb|2TLX|A Chain A, Thermolysin (Native)
pdb|1LND|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Zinc
pdb|1LNE|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Cadmium
pdb|1LNF|E Chain E, Thermolysin (E.C.3.4.24.27)
pdb|4TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With Cbz-Phep-Leu-Ala
(Zfpla)
pdb|1FJQ|A Chain A, Thermolysin (70% Acetone Soaked Crystals)
pdb|1HYT| Thermolysin (E.C.3.4.24.27) Complexed With Benzylsuccinic Acid
(2(S)-Benzyl-3-Carboxypropionic Acid)
pdb|1LNB|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Iron
pdb|1LNC|E Chain E, Thermolysin (E.C.3.4.24.27) Complexed With Manganese
pdb|1TMN|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With
N-(1-Carboxy-3-Phenylpropyl)-L-Leucyl-L-Tryptophan
pdb|1FJW|A Chain A, Thermolysin (50 Mm Phenol Soaked)
pdb|7TLI|A Chain A, Thermolysin (90% Isopropanol Soaked Crystals)
pdb|3TLI|A Chain A, Thermolysin (10% Isopropanol Soaked Crystals)
pdb|4TLI|A Chain A, Thermolysin (25% Isopropanol Soaked Crystals)
pdb|2TLI|A Chain A, Thermolysin (5% Isopropanol Soaked Crystals)
pdb|1FJO|A Chain A, Thermolysin (60% Acetone Soaked Crystals)
pdb|1FJ3|A Chain A, Thermolysin (50% Acetone Soaked)
pdb|1QF1|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-
Sulphanylheptanoyl)-Phe-Ala. Parameters For
Zn-Bidentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1FJU|A Chain A, Thermolysin (80% Acetonitrile Soaked Crystals)
pdb|1FJV|A Chain A, Thermolysin (60% Acetonitrile Soaked Crystals)
pdb|1TLI|A Chain A, Thermolysin (2% Isopropanol Soaked Crystals)
pdb|1QF2|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Gly-(5-Phenylproline). Parameters For
Zn- Monodentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1TLX|A Chain A, Thermolysin (Native)
pdb|6TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|5TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|8TLI|A Chain A, Thermolysin (100% Isopropanol Soaked Crystals)
pdb|1FJT|A Chain A, Thermolysin (50% Acetonitrile Soaked Crystals)
pdb|1QF0|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Phe-Tyr. Parameters For Zn-Bidentation
Of Mercaptoacyldipeptides In Metalloendopeptidase
pdb|1TLP|E Chain E, Thermolysin (E.C.3.4.24.27) Complex With Phosphoramidon
pdb|4TLN| Thermolysin (E.C.3.4.24.27) Complex With L-Leucyl-Hydroxylamine
pdb|5TLN| Thermolysin (E.C.3.4.24.27) Complex With
Honh-Benzylmalonyl-L-Alanylglycine-P-Nitroanilide
pdb|7TLN| Thermolysin (E.C.3.4.24.27) Complex With Ch2co(N-Oh)leu-Och3
Length = 316
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 34 SGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPD 88
SG IN++++ + F ++P+ +IG + +PG S S+ D + PD
Sbjct: 161 SGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPD 215
>pdb|1THL| Thermolysin (E.C.3.4.24.27) Complexed With A Novel Glutaramide
Derivative, N-(1-(2(R,S)-Carboxy-4-Phenylbutyl)
Cyclopentylcarbonyl)-(S)-Tryptophan
Length = 319
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 34 SGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPD 88
SG IN++++ + F ++P+ +IG + +PG S S+ D + PD
Sbjct: 161 SGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPD 215
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.137 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,039,737
Number of Sequences: 13198
Number of extensions: 38151
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 13
length of query: 196
length of database: 2,899,336
effective HSP length: 83
effective length of query: 113
effective length of database: 1,803,902
effective search space: 203840926
effective search space used: 203840926
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)