BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645414|ref|NP_207588.1| trigger factor (tig)
[Helicobacter pylori 26695]
(451 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HXV|A Chain A, Ppiase Domain Of The Mycoplasma Genital... 73 7e-14
pdb|1BJT| Topoisomerase Ii Residues 409 - 1201 >gi|163327... 30 0.43
pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of... 30 0.56
pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bo... 30 0.56
pdb|1JXE| Stoffel Fragment Of Taq Dna Polymerase I >gi|67... 30 0.56
pdb|1TAQ| Structure Of Taq Dna Polymerase 30 0.56
pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of... 30 0.56
pdb|1TAU|A Chain A, Structure Of Dna Polymerase 30 0.56
pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragm... 30 0.56
pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An ... 30 0.56
pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of... 30 0.56
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 29 0.95
pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphory... 29 1.2
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin P... 28 1.6
pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Prot... 28 2.8
pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 27 4.7
pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phos... 27 4.7
pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue ... 27 4.7
pdb|1AGS|A Chain A, Alpha Glutathione S-Transferase (E.C.2.... 27 6.2
pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. J... 27 6.2
pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin ... 27 6.2
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoser... 26 8.0
pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexe... 26 8.0
pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phos... 26 8.0
>pdb|1HXV|A Chain A, Ppiase Domain Of The Mycoplasma Genitalium Trigger Factor
Length = 113
Score = 72.8 bits (177), Expect = 7e-14
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 144 KQLAKDYAKFVDTNTQRKAQNDDKLTIDFEGFIDNAPFEGGKAENFNLILGSKQMLEDFE 203
++LAK + VD + +K N D IDF G +DN A+N+ L +GS ++ FE
Sbjct: 13 EKLAKTKSTMVDVS-DKKLANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFE 71
Query: 204 KALLGMQAGEEKEFPLTFPSKYHAEHLAGKEAFFKVKLHQIQ 245
L+ M+ ++K LTFPS YH + L K F+V L I+
Sbjct: 72 TGLIAMKVNQKKTLALTFPSDYHVKELQSKPVTFEVVLKAIK 113
>pdb|1BJT| Topoisomerase Ii Residues 409 - 1201
pdb|1BGW| Topoisomerase Residues 410 - 1202,
Length = 793
Score = 30.4 bits (67), Expect = 0.43
Identities = 22/93 (23%), Positives = 45/93 (47%), Gaps = 5/93 (5%)
Query: 4 EVKKIDTANARLSA--KLSIENLEKRYDKIAQKIAQKVKIDGFRRGKVPLSLVKTRYQAQ 61
++KK ++ N LS + +E +KR D +++++ +V+ F+ + + + K +
Sbjct: 575 KIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK---ELT 631
Query: 62 IEQDAQEEMIQEVLKNAFKELGIENKDLIGSPN 94
+ + +IQE+ F E K GSPN
Sbjct: 632 VTNKPRNAIIQELENLGFPRFNKEGKPYYGSPN 664
>pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 30.0 bits (66), Expect = 0.56
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 4/106 (3%)
Query: 175 FIDNAPFEGGKAENFNLILGSKQMLEDFEKALLGMQAGEEKEFPLTFPSKYHAEHLAGKE 234
+I+ EG + + G ++ + D E + ++ E+ P + A L K
Sbjct: 414 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAER-MAFNMPVQGTAADLM-KL 471
Query: 235 AFFKV--KLHQIQAREMLEINDELAKIVLANEENATLKLLKERVEG 278
A K+ +L ++ AR +L+++DEL A +L KE +EG
Sbjct: 472 AMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEG 517
>pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
pdb|1KTQ| Dna Polymerase
Length = 543
Score = 30.0 bits (66), Expect = 0.56
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 4/106 (3%)
Query: 175 FIDNAPFEGGKAENFNLILGSKQMLEDFEKALLGMQAGEEKEFPLTFPSKYHAEHLAGKE 234
+I+ EG + + G ++ + D E + ++ E+ P + A L K
Sbjct: 417 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAER-MAFNMPVQGTAADLM-KL 474
Query: 235 AFFKV--KLHQIQAREMLEINDELAKIVLANEENATLKLLKERVEG 278
A K+ +L ++ AR +L+++DEL A +L KE +EG
Sbjct: 475 AMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEG 520
>pdb|1JXE| Stoffel Fragment Of Taq Dna Polymerase I
pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
Large Fragment Of Dna Polymerase I From Thermus
Aquaticus
Length = 540
Score = 30.0 bits (66), Expect = 0.56
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 4/106 (3%)
Query: 175 FIDNAPFEGGKAENFNLILGSKQMLEDFEKALLGMQAGEEKEFPLTFPSKYHAEHLAGKE 234
+I+ EG + + G ++ + D E + ++ E+ P + A L K
Sbjct: 414 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAER-MAFNMPVQGTAADLM-KL 471
Query: 235 AFFKV--KLHQIQAREMLEINDELAKIVLANEENATLKLLKERVEG 278
A K+ +L ++ AR +L+++DEL A +L KE +EG
Sbjct: 472 AMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEG 517
>pdb|1TAQ| Structure Of Taq Dna Polymerase
Length = 832
Score = 30.0 bits (66), Expect = 0.56
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 4/106 (3%)
Query: 175 FIDNAPFEGGKAENFNLILGSKQMLEDFEKALLGMQAGEEKEFPLTFPSKYHAEHLAGKE 234
+I+ EG + + G ++ + D E + ++ E+ P + A L K
Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAER-MAFNMPVQGTAADLM-KL 763
Query: 235 AFFKV--KLHQIQAREMLEINDELAKIVLANEENATLKLLKERVEG 278
A K+ +L ++ AR +L+++DEL A +L KE +EG
Sbjct: 764 AMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEG 809
>pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 30.0 bits (66), Expect = 0.56
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 4/106 (3%)
Query: 175 FIDNAPFEGGKAENFNLILGSKQMLEDFEKALLGMQAGEEKEFPLTFPSKYHAEHLAGKE 234
+I+ EG + + G ++ + D E + ++ E+ P + A L K
Sbjct: 414 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAER-MAFNMPVQGTAADLM-KL 471
Query: 235 AFFKV--KLHQIQAREMLEINDELAKIVLANEENATLKLLKERVEG 278
A K+ +L ++ AR +L+++DEL A +L KE +EG
Sbjct: 472 AMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEG 517
>pdb|1TAU|A Chain A, Structure Of Dna Polymerase
Length = 832
Score = 30.0 bits (66), Expect = 0.56
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 4/106 (3%)
Query: 175 FIDNAPFEGGKAENFNLILGSKQMLEDFEKALLGMQAGEEKEFPLTFPSKYHAEHLAGKE 234
+I+ EG + + G ++ + D E + ++ E+ P + A L K
Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAER-MAFNMPVQGTAADLM-KL 763
Query: 235 AFFKV--KLHQIQAREMLEINDELAKIVLANEENATLKLLKERVEG 278
A K+ +L ++ AR +L+++DEL A +L KE +EG
Sbjct: 764 AMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEG 809
>pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus
Length = 538
Score = 30.0 bits (66), Expect = 0.56
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 4/106 (3%)
Query: 175 FIDNAPFEGGKAENFNLILGSKQMLEDFEKALLGMQAGEEKEFPLTFPSKYHAEHLAGKE 234
+I+ EG + + G ++ + D E + ++ E+ P + A L K
Sbjct: 412 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAER-MAFNMPVQGTAADLM-KL 469
Query: 235 AFFKV--KLHQIQAREMLEINDELAKIVLANEENATLKLLKERVEG 278
A K+ +L ++ AR +L+++DEL A +L KE +EG
Sbjct: 470 AMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEG 515
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
Orientation For The Structure-Specific Nuclease Domain
Length = 832
Score = 30.0 bits (66), Expect = 0.56
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 4/106 (3%)
Query: 175 FIDNAPFEGGKAENFNLILGSKQMLEDFEKALLGMQAGEEKEFPLTFPSKYHAEHLAGKE 234
+I+ EG + + G ++ + D E + ++ E+ P + A L K
Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAER-MAFNMPVQGTAADLM-KL 763
Query: 235 AFFKV--KLHQIQAREMLEINDELAKIVLANEENATLKLLKERVEG 278
A K+ +L ++ AR +L+++DEL A +L KE +EG
Sbjct: 764 AMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEG 809
>pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
From T. Aquaticus Bound To A PrimerTEMPLATE DNA
Length = 539
Score = 30.0 bits (66), Expect = 0.56
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 4/106 (3%)
Query: 175 FIDNAPFEGGKAENFNLILGSKQMLEDFEKALLGMQAGEEKEFPLTFPSKYHAEHLAGKE 234
+I+ EG + + G ++ + D E + ++ E+ P + A L K
Sbjct: 413 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAER-MAFNMPVQGTAADLM-KL 470
Query: 235 AFFKV--KLHQIQAREMLEINDELAKIVLANEENATLKLLKERVEG 278
A K+ +L ++ AR +L+++DEL A +L KE +EG
Sbjct: 471 AMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEG 516
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 29.3 bits (64), Expect = 0.95
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 229 HLAGKEAFFKVKLHQIQAREMLEINDELAKIVLANEENATLKLLKE-RVEGQLFLENKAR 287
+L KE+ L Q E E+ + V A A+ K+L E + + + +E K R
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVER-VKAESAQASAKMLHEMQRKNEQMMEQKER 522
Query: 288 LYNEELKEKLIENLDEKIVFDLPKTIIEQEMDLLFRNALYSMQAEEVKSLQESQEKAKEK 347
Y E LK+ L EK+ D + + EQE L + +Q +E + Q++++
Sbjct: 523 SYQEHLKQ-----LTEKMENDRVQLLKEQERTLALK-----LQEQEQLLKEGFQKESRIM 572
Query: 348 RESFRNDATK 357
+ ++ TK
Sbjct: 573 KNEIQDLQTK 582
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 28.9 bits (63), Expect = 1.2
Identities = 23/90 (25%), Positives = 39/90 (42%), Gaps = 5/90 (5%)
Query: 143 LKQLAKDYAKFVDTNTQRKAQNDDKLTIDFEGFIDNAPFEGGKAENFNLILGSKQMLEDF 202
+KQ A +D + Q++ ND I+ E F D+A F E + +K L +F
Sbjct: 457 IKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRDQYRE---IKQANKVRLAEF 513
Query: 203 EKALLGMQAGEEKEFPLTFP--SKYHAEHL 230
K G++ + F + +Y +HL
Sbjct: 514 VKVRTGIEINPQAIFDIQIKRLHEYKRQHL 543
>pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
Length = 796
Score = 28.5 bits (62), Expect = 1.6
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 143 LKQLAKDYAKFVDTNTQRKAQNDDKLTIDFEGFIDNAPFEGGKAENFNLILGSKQMLEDF 202
+KQ A +D + Q++ ND I+ E F D+A F + + + +K L +F
Sbjct: 457 IKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKF---RQQYREIKQANKVRLAEF 513
Query: 203 EKALLGMQAGEEKEFPLTFP--SKYHAEHL 230
K G++ + F + +Y +HL
Sbjct: 514 VKVRTGIEINPQAIFDIQIKRLHEYKRQHL 543
>pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|B Chain B, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|C Chain C, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|D Chain D, Crystal Structure Of Outer Surface Protein C (Ospc)
Length = 164
Score = 27.7 bits (60), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (58%)
Query: 6 KKIDTANARLSAKLSIENLEKRYDKIAQKIAQKVKID 42
KKI +NA + A +E L D++A+ I +K+K D
Sbjct: 10 KKITESNAVVLAVKEVETLLTSIDELAKAIGKKIKSD 46
>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1
Length = 76
Score = 26.9 bits (58), Expect = 4.7
Identities = 15/42 (35%), Positives = 24/42 (56%)
Query: 108 EADIGLKPTIVLDKIKECVPSVGVEVPNEEKIDERLKQLAKD 149
E +I ++PT +D+IKE V P ++++ KQLA D
Sbjct: 12 EIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADD 53
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 26.9 bits (58), Expect = 4.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 251 EINDELAKIVLANEENATLKLLKERVEGQLFLENKARLYNEELKEKLIENLDEKI 305
E DE+A+ EE K+ KE +EG+L E R LK+ IE +++ I
Sbjct: 20 ETIDEIAREAGVEEE--VKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAI 72
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 26.9 bits (58), Expect = 4.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 251 EINDELAKIVLANEENATLKLLKERVEGQLFLENKARLYNEELKEKLIENLDEKI 305
E DE+A+ EE K+ KE +EG+L E R LK+ IE +++ I
Sbjct: 20 ETIDEIAREAGVEEE--VKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAI 72
>pdb|1AGS|A Chain A, Alpha Glutathione S-Transferase (E.C.2.5.1.18) 1-2-1
Chimera Consisting Of Residues 1-87 Gst1, Residues
88-116 Gst2 And Residues 89-221 Gst1, Mutant With Gly 82
Replaced By Arg (G82r) Complexed With S-Hexyl
Glutathione (Gsh)
pdb|1AGS|B Chain B, Alpha Glutathione S-Transferase (E.C.2.5.1.18) 1-2-1
Chimera Consisting Of Residues 1-87 Gst1, Residues
88-116 Gst2 And Residues 89-221 Gst1, Mutant With Gly 82
Replaced By Arg (G82r) Complexed With S-Hexyl
Glutathione (Gsh)
Length = 221
Score = 26.6 bits (57), Expect = 6.2
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 24/173 (13%)
Query: 4 EVKKIDTANARLSAKLSIEN-LEKRYDKIAQKIAQKVKIDGFRRGKVPLS--LVKTRYQA 60
+V ++ +L +I N + +Y+ + I +K ID + G L ++ +
Sbjct: 53 QVPMVEIDGMKLVQTRAILNYIASKYNLYRKDIKEKALIDMYIEGIADLGEMILLLPFTQ 112
Query: 61 QIEQDAQEEMIQEVLKNAF-----KELGIENKD-LIGSPNLTKFEKKDTHFEIEADIGLK 114
EQDA+ +I+E +KN + K L +D L+G+ K + D H
Sbjct: 113 PEEQDAKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGN----KLSRADIHL--------- 159
Query: 115 PTIVLDKIKECVPSVGVEVPNEEKIDERLKQLAKDYAKFVDTNTQRKAQNDDK 167
+L ++E S+ P + + R+ L KF+ + RK D+K
Sbjct: 160 -VELLYYVEELDSSLISSFPLLKALKTRISNL-PTVKKFLQPGSPRKPPMDEK 210
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 26.6 bits (57), Expect = 6.2
Identities = 26/119 (21%), Positives = 52/119 (42%), Gaps = 11/119 (9%)
Query: 250 LEINDELAKIVLANEENATLKLLKERVEGQLFLENKARLYNEELKEKLIENLDEKIVFDL 309
+ + DE+ A+ +KL KE ++ R+ + +L E + + KI+ +
Sbjct: 68 IALADEVKSTTXADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNP 127
Query: 310 P--------KTIIEQEMDLLFRNALYSMQAEEVKSLQESQEKAKEKRESFRNDATKSVK 360
P IIE+ +LL N + +++ Q ++ AK ++ F N T ++K
Sbjct: 128 PIRAGKEVLHRIIEEGKELLKDNGEIWV---VIQTKQGAKSLAKYXKDVFGNVETVTIK 183
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 26.6 bits (57), Expect = 6.2
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 17/111 (15%)
Query: 248 EMLEI---NDELAKIVLANEENATLKLLKERVEGQLFLENKARLYNEELKEKLIENLDEK 304
++LEI DE++ ++ + + L L+ ++ QL E + +K+ +K
Sbjct: 140 QVLEIPYEGDEISMMLALSRQEVPLATLEPLLKAQLIEE-----WANSVKK-------QK 187
Query: 305 IVFDLPKTIIEQEMDLLFRNALYSMQAEEVKSLQESQEKAKEKRESFRNDA 355
+ LP+ +EQE+DL ++ L ++ E+ + +K+E F + A
Sbjct: 188 VEVYLPRFTVEQEIDL--KDILKALGVTEIFIKDANLTAMSDKKELFLSKA 236
>pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
Length = 211
Score = 26.2 bits (56), Expect = 8.0
Identities = 19/55 (34%), Positives = 27/55 (48%), Gaps = 2/55 (3%)
Query: 251 EINDELAKIVLANEENATLKLLKERVEGQLFLENKARLYNEELKEKLIENLDEKI 305
E DE+A+ EE K+ KE EG+L E R LK+ IE +++ I
Sbjct: 20 ETIDEIAREAGVEEE--VKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEKVEKAI 72
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 26.2 bits (56), Expect = 8.0
Identities = 26/95 (27%), Positives = 40/95 (41%), Gaps = 5/95 (5%)
Query: 84 IENKDLIGSPNLTKFEKKDTHFEIEADIGLKPTIVLDKIKECVPSVGVEVPN--EEKIDE 141
I +K LI + + + K I+A+ TI K++E SV ++ E +
Sbjct: 47 IPSKALISASHRYEQAKHSEEMGIKAE---NVTIDFAKVQEWKASVVKKLTGGVEGLLKG 103
Query: 142 RLKQLAKDYAKFVDTNTQRKAQNDDKLTIDFEGFI 176
++ K A FVD NT R D T F+ I
Sbjct: 104 NKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAI 138
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 26.2 bits (56), Expect = 8.0
Identities = 19/55 (34%), Positives = 27/55 (48%), Gaps = 2/55 (3%)
Query: 251 EINDELAKIVLANEENATLKLLKERVEGQLFLENKARLYNEELKEKLIENLDEKI 305
E DE+A+ EE K+ KE EG+L E R LK+ IE +++ I
Sbjct: 20 ETIDEIAREAGVEEE--VKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEKVEKAI 72
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.133 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,348,033
Number of Sequences: 13198
Number of extensions: 99009
Number of successful extensions: 235
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 26
length of query: 451
length of database: 2,899,336
effective HSP length: 91
effective length of query: 360
effective length of database: 1,698,318
effective search space: 611394480
effective search space used: 611394480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)