BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645416|ref|NP_207590.1| flagellar sheath adhesin
hpaA [Helicobacter pylori 26695]
(260 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LFG| Lactoferrin (Diferric) 27 2.4
pdb|1PHN|B Chain B, Structure Of Phycocyanin From Cyanidium... 27 3.1
pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain Fro... 27 3.1
pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin 26 4.0
pdb|1LFH| Lactoferrin (Apo Form) 26 4.0
pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin 26 4.0
pdb|1LFI| Lactoferrin (Copper Form) 26 4.0
pdb|1LCF| Lactoferrin (Copper And Oxalate Form) 26 4.0
pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin 26 4.0
pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.... 26 4.0
pdb|1F05|A Chain A, Crystal Structure Of Human Transaldolas... 26 5.3
pdb|1M7K|A Chain A, Solution Structure Of The Sodd Bag Domain 25 6.9
pdb|1CPC|B Chain B, C-Phycocyanin 25 6.9
pdb|1CPC|L Chain L, C-Phycocyanin 25 6.9
>pdb|1LFG| Lactoferrin (Diferric)
Length = 691
Score = 26.9 bits (58), Expect = 2.4
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 94 QGYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIVLRPDPKRTIQ----KKSEPGLLFST 149
+ YK S SSD D + EGYLAVA +V R D T KKS T
Sbjct: 413 ENYK--SAQSSDPDPNCVDRPVEGYLAVA----VVRRSDTSLTWNSVKGKKS-----CHT 461
Query: 150 GLDKMEGVLIPAGFV 164
+D+ G IP G +
Sbjct: 462 AVDRTAGWNIPMGLL 476
>pdb|1PHN|B Chain B, Structure Of Phycocyanin From Cyanidium Caldarium At 1.65a
Resolution
Length = 172
Score = 26.6 bits (57), Expect = 3.1
Identities = 17/54 (31%), Positives = 26/54 (47%)
Query: 75 YENKFKNQTALKVEQILQNQGYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIV 128
Y N+ +E IL+ Y +I+ DSS DD + +E Y A+ + G V
Sbjct: 74 YTNRRMAACLRDMEIILRYVSYAIIAGDSSILDDRCLNGLRETYQALGVPGASV 127
>pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|F Chain F, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|A Chain A, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|B Chain B, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|C Chain C, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|D Chain D, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
Length = 279
Score = 26.6 bits (57), Expect = 3.1
Identities = 11/29 (37%), Positives = 19/29 (64%)
Query: 217 NDAIKSALNKIFANIMQEIDKKLTQKNLE 245
N AIK+ ++ IF I+ E+ K+ + NL+
Sbjct: 146 NSAIKAGVSAIFDRILSELSVKMKRLNLD 174
>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
Length = 1056
Score = 26.2 bits (56), Expect = 4.0
Identities = 23/111 (20%), Positives = 48/111 (42%), Gaps = 9/111 (8%)
Query: 95 GYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIVLR-----PDPKRTIQKKSEPGLLF-- 147
GY + S S + LS KEG + + +++L P + ++ GL++
Sbjct: 208 GYIIKSAHSEEIQQLSVFDIKEGNVVIESRQKLILEGIQSAPAASQAASLQNRGGLMYKF 267
Query: 148 -STGLDKMEGVLIPAGFVKVTILEPMSGESLDSFTMDLSELDIQEKFLKTT 197
S+ + KM + + G + + + +++ + + E D KFL+ T
Sbjct: 268 PSSAITKMSSLFVTKGKNLESEIHTVLKHLVENNQLSVHE-DAPAKFLRLT 317
>pdb|1LFH| Lactoferrin (Apo Form)
Length = 691
Score = 26.2 bits (56), Expect = 4.0
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 94 QGYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIVLRPDPKRTIQ----KKSEPGLLFST 149
+ YK S SSD D + EGYLAVA +V R D T KKS T
Sbjct: 413 ENYK--SQQSSDPDPNCVDRPVEGYLAVA----VVRRSDTSLTWNSVKGKKS-----CHT 461
Query: 150 GLDKMEGVLIPAGFV 164
+D+ G IP G +
Sbjct: 462 AVDRTAGWNIPMGLL 476
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin
Length = 691
Score = 26.2 bits (56), Expect = 4.0
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 94 QGYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIVLRPDPKRTIQ----KKSEPGLLFST 149
+ YK S SSD D + EGYLAVA +V R D T KKS T
Sbjct: 413 ENYK--SQQSSDPDPNCVDRPVEGYLAVA----VVRRSDTSLTWNSVKGKKS-----CHT 461
Query: 150 GLDKMEGVLIPAGFV 164
+D+ G IP G +
Sbjct: 462 AVDRTAGWNIPMGLL 476
>pdb|1LFI| Lactoferrin (Copper Form)
Length = 691
Score = 26.2 bits (56), Expect = 4.0
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 94 QGYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIVLRPDPKRTIQ----KKSEPGLLFST 149
+ YK S SSD D + EGYLAVA +V R D T KKS T
Sbjct: 413 ENYK--SQQSSDPDPNCVDRPVEGYLAVA----VVRRSDTSLTWNSVKGKKS-----CHT 461
Query: 150 GLDKMEGVLIPAGFV 164
+D+ G IP G +
Sbjct: 462 AVDRTAGWNIPMGLL 476
>pdb|1LCF| Lactoferrin (Copper And Oxalate Form)
Length = 691
Score = 26.2 bits (56), Expect = 4.0
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 94 QGYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIVLRPDPKRTIQ----KKSEPGLLFST 149
+ YK S SSD D + EGYLAVA +V R D T KKS T
Sbjct: 413 ENYK--SQQSSDPDPNCVDRPVEGYLAVA----VVRRSDTSLTWNSVKGKKS-----CHT 461
Query: 150 GLDKMEGVLIPAGFV 164
+D+ G IP G +
Sbjct: 462 AVDRTAGWNIPMGLL 476
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin
Length = 692
Score = 26.2 bits (56), Expect = 4.0
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 94 QGYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIVLRPDPKRTIQ----KKSEPGLLFST 149
+ YK S SSD D + EGYLAVA +V R D T KKS T
Sbjct: 414 ENYK--SQQSSDPDPNCVDRPVEGYLAVA----VVRRSDTSLTWNSVKGKKS-----CHT 462
Query: 150 GLDKMEGVLIPAGFV 164
+D+ G IP G +
Sbjct: 463 AVDRTAGWNIPMGLL 477
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution.
pdb|1BKA| Oxalate-Substituted Diferric Lactoferrin
Length = 691
Score = 26.2 bits (56), Expect = 4.0
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 94 QGYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIVLRPDPKRTIQ----KKSEPGLLFST 149
+ YK S SSD D + EGYLAVA +V R D T KKS T
Sbjct: 413 ENYK--SQQSSDPDPNCVDRPVEGYLAVA----VVRRSDTSLTWNSVKGKKS-----CHT 461
Query: 150 GLDKMEGVLIPAGFV 164
+D+ G IP G +
Sbjct: 462 AVDRTAGWNIPMGLL 476
>pdb|1F05|A Chain A, Crystal Structure Of Human Transaldolase
pdb|1F05|B Chain B, Crystal Structure Of Human Transaldolase
Length = 337
Score = 25.8 bits (55), Expect = 5.3
Identities = 25/81 (30%), Positives = 41/81 (49%), Gaps = 12/81 (14%)
Query: 2 KANNHFKDFAWKKCLLGASV-----VALLVGC-----SPHII-ETNEVALKLNYHPASEK 50
K N++K F++K ++GAS + L GC SP ++ E + KL +++
Sbjct: 219 KIYNYYKKFSYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGELLQDNAKLVPVLSAKA 278
Query: 51 VQALD-EKILLLRPAFQYSDN 70
QA D EKI L +F++ N
Sbjct: 279 AQASDLEKIHLDEKSFRWLHN 299
>pdb|1M7K|A Chain A, Solution Structure Of The Sodd Bag Domain
Length = 99
Score = 25.4 bits (54), Expect = 6.9
Identities = 14/70 (20%), Positives = 36/70 (51%)
Query: 46 PASEKVQALDEKILLLRPAFQYSDNIAKEYENKFKNQTALKVEQILQNQGYKVISVDSSD 105
P+ E +KI+ + QY + +E+ K ++ +E++L + ++ SV++
Sbjct: 14 PSDESTPPSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGG 73
Query: 106 KDDLSFSQKK 115
+D + ++K+
Sbjct: 74 QDSVRQARKE 83
>pdb|1CPC|B Chain B, C-Phycocyanin
Length = 172
Score = 25.4 bits (54), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (51%)
Query: 87 VEQILQNQGYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIV 128
+E IL+ Y + + D+S DD + KE YLA+ G V
Sbjct: 86 MEIILRYVTYAIFAGDASVLDDRCLNGLKETYLALGTPGSSV 127
>pdb|1CPC|L Chain L, C-Phycocyanin
Length = 172
Score = 25.4 bits (54), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (51%)
Query: 87 VEQILQNQGYKVISVDSSDKDDLSFSQKKEGYLAVAMNGEIV 128
+E IL+ Y + + D+S DD + KE YLA+ G V
Sbjct: 86 MEIILRYVTYAIFAGDASVLDDRCLNGLKETYLALGTPGSSV 127
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.131 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,403,308
Number of Sequences: 13198
Number of extensions: 52570
Number of successful extensions: 116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 15
length of query: 260
length of database: 2,899,336
effective HSP length: 86
effective length of query: 174
effective length of database: 1,764,308
effective search space: 306989592
effective search space used: 306989592
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)