BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645417|ref|NP_207591.1| molybdenum cofactor
biosynthesis protein C (moaC) [Helicobacter pylori 26695]
(158 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EKR|A Chain A, Moac Protein From E. Coli 129 2e-31
pdb|1EKS|A Chain A, Asp128ala Variant Of Moac Protein From ... 126 1e-30
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Fo... 27 1.4
pdb|1BC0| Recombinant Rat Annexin V, W185a Mutant 26 2.4
pdb|1SAV| Human Annexin V With Proline Substitution By Th... 25 3.2
pdb|1ALA| Annexin V 25 3.2
pdb|1HVD| Annexin V (Lipocortin V, Endonexin Ii, Placenta... 25 3.2
pdb|1ANW|A Chain A, Annexin V >gi|809186|pdb|1ANW|B Chain B... 25 3.2
pdb|1AVH|A Chain A, Annexin V (Hexagonal Crystal Form) >gi|... 25 3.2
pdb|1HVF| Annexin V (Lipocortin V, Endonexin Ii, Placenta... 25 3.2
pdb|1HVG| Annexin V (Lipocortin V, Endonexin Ii, Placenta... 25 3.2
pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosac... 25 4.1
pdb|2RAN| Annexin V 25 4.1
pdb|1BCW| Recombinant Rat Annexin V, T72a Mutant 25 4.1
pdb|1BC1| Recombinant Rat Annexin V, Quadruple Mutant (T7... 25 4.1
pdb|1BCY| Recombinant Rat Annexin V, T72k Mutant 25 4.1
pdb|1BCZ| Recombinant Rat Annexin V, T72s Mutant 25 4.1
pdb|1BC3| Recombinant Rat Annexin V, Triple Mutant (T72k,... 25 4.1
pdb|2IF1| Human Translation Initiation Factor Eif1, Nmr, ... 24 7.0
>pdb|1EKR|A Chain A, Moac Protein From E. Coli
Length = 161
Score = 129 bits (324), Expect = 2e-31
Identities = 70/155 (45%), Positives = 93/155 (59%)
Query: 3 LTHLNEENQPKMVDIGDKETTERIALASGRISMNKEAYDAIINHCVKKGPVLQTAIIAGI 62
LTH+N + MVD+ K T R A A ++M E II+ KG V TA IAGI
Sbjct: 4 LTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGI 63
Query: 63 MGAKKTSELIPMCHPIMLNGVDIDILEEKETCSFKLYARVKTQAKTGVEMEALMSVSIGL 122
AK+T +LIP+CHP+ML+ V++++ E E ++ + KTGVEMEAL + S+
Sbjct: 64 QAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAA 123
Query: 123 LTIYDMVKAIDKSMTISGVMLEHKSGGKSGDYNAK 157
LTIYDM KA+ K M I V L KSGGKSGD+ +
Sbjct: 124 LTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVE 158
>pdb|1EKS|A Chain A, Asp128ala Variant Of Moac Protein From E. Coli
Length = 161
Score = 126 bits (316), Expect = 1e-30
Identities = 69/155 (44%), Positives = 92/155 (58%)
Query: 3 LTHLNEENQPKMVDIGDKETTERIALASGRISMNKEAYDAIINHCVKKGPVLQTAIIAGI 62
LTH+N + MVD+ K T R A A ++M E II+ KG V TA IAGI
Sbjct: 4 LTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGI 63
Query: 63 MGAKKTSELIPMCHPIMLNGVDIDILEEKETCSFKLYARVKTQAKTGVEMEALMSVSIGL 122
AK+T +LIP+CHP+ML+ V++++ E E ++ + KTGVEMEAL + S+
Sbjct: 64 QAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAA 123
Query: 123 LTIYDMVKAIDKSMTISGVMLEHKSGGKSGDYNAK 157
LTIY M KA+ K M I V L KSGGKSGD+ +
Sbjct: 124 LTIYAMCKAVQKDMVIGPVRLLAKSGGKSGDFKVE 158
>pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
Length = 699
Score = 26.6 bits (57), Expect = 1.4
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 19 DKETTERIALASGRISMNKEAYDAIINHCVKKGPVLQTAIIAGIMGAKKTSELIP 73
D+E E + I + Y+A+ N C++ G + Q I A EL P
Sbjct: 10 DREAAEGLGSHERAIKYLNQDYEALRNECLEAGTLFQDPSFPAIPSALGFKELGP 64
>pdb|1BC0| Recombinant Rat Annexin V, W185a Mutant
Length = 319
Score = 25.8 bits (55), Expect = 2.4
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ +G ++ + + DK MTISG +E
Sbjct: 182 ELKAGTDEEKFITI-LGTRSVSHLRRVFDKYMTISGFQIE 220
>pdb|1SAV| Human Annexin V With Proline Substitution By Thioproline
Length = 320
Score = 25.4 bits (54), Expect = 3.2
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ G ++ + K DK MTISG +E
Sbjct: 184 ELKWGTDEEKFITI-FGTRSVSHLRKVFDKYMTISGFQIE 222
>pdb|1ALA| Annexin V
Length = 321
Score = 25.4 bits (54), Expect = 3.2
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ +G ++ + + DK MTISG +E
Sbjct: 184 ELKWGTDEETFITI-LGTRSVSHLRRVFDKYMTISGFQIE 222
>pdb|1HVD| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) (Calcium Ions Are Visible) Mutation With Glu 17
Replaced By Gly (E17g)
Length = 319
Score = 25.4 bits (54), Expect = 3.2
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ G ++ + K DK MTISG +E
Sbjct: 183 ELKWGTDEEKFITI-FGTRSVSHLRKVFDKYMTISGFQIE 221
>pdb|1ANW|A Chain A, Annexin V
pdb|1ANW|B Chain B, Annexin V
pdb|1ANX|A Chain A, Annexin V
pdb|1ANX|B Chain B, Annexin V
pdb|1ANX|C Chain C, Annexin V
Length = 319
Score = 25.4 bits (54), Expect = 3.2
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ G ++ + K DK MTISG +E
Sbjct: 183 ELKWGTDEEKFITI-FGTRSVSHLRKVFDKYMTISGFQIE 221
>pdb|1AVH|A Chain A, Annexin V (Hexagonal Crystal Form)
pdb|1AVH|B Chain B, Annexin V (Hexagonal Crystal Form)
pdb|1HAK|A Chain A, Crystal Structure Of Recombinant Human Placental Annexin V
Complexed With K-201 As A Calcium Channel Activity
Inhibitor
pdb|1HAK|B Chain B, Crystal Structure Of Recombinant Human Placental Annexin V
Complexed With K-201 As A Calcium Channel Activity
Inhibitor
pdb|1AVR| Annexin V (Rhombohedral Crystal Form)
Length = 320
Score = 25.4 bits (54), Expect = 3.2
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ G ++ + K DK MTISG +E
Sbjct: 184 ELKWGTDEEKFITI-FGTRSVSHLRKVFDKYMTISGFQIE 222
>pdb|1HVF| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) Mutant With Glu 17 Replaced By Gly, Glu 78
Replaced By Gln (E17g,E78q) Complexed With Calcium
Length = 319
Score = 25.4 bits (54), Expect = 3.2
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ G ++ + K DK MTISG +E
Sbjct: 183 ELKWGTDEEKFITI-FGTRSVSHLRKVFDKYMTISGFQIE 221
>pdb|1HVG| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) (Calcium Ions Are Visible) Mutant With Glu 78
Replaced By Gln (E78q) (Second Crystal Form)
pdb|1HVE| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) (Calcium Ions Are Visible) Mutant With Glu 78
Replaced By Gln (E78q)
Length = 319
Score = 25.4 bits (54), Expect = 3.2
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ G ++ + K DK MTISG +E
Sbjct: 183 ELKWGTDEEKFITI-FGTRSVSHLRKVFDKYMTISGFQIE 221
>pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosaccharides
pdb|1A8A| Rat Annexin V Complexed With Glycerophosphoserine
pdb|1A8B| Rat Annexin V Complexed With Glycerophosphoethanolamine
Length = 318
Score = 25.0 bits (53), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ +G ++ + + DK MTISG +E
Sbjct: 181 ELKWGTDEEKFITI-LGTRSVSHLRRVFDKYMTISGFQIE 219
>pdb|2RAN| Annexin V
Length = 316
Score = 25.0 bits (53), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ +G ++ + + DK MTISG +E
Sbjct: 181 ELKWGTDEEKFITI-LGTRSVSHLRRVFDKYMTISGFQIE 219
>pdb|1BCW| Recombinant Rat Annexin V, T72a Mutant
Length = 319
Score = 25.0 bits (53), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ +G ++ + + DK MTISG +E
Sbjct: 182 ELKWGTDEEKFITI-LGTRSVSHLRRVFDKYMTISGFQIE 220
>pdb|1BC1| Recombinant Rat Annexin V, Quadruple Mutant (T72k, S144k, S228k,
S303k)
Length = 319
Score = 25.0 bits (53), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ +G ++ + + DK MTISG +E
Sbjct: 182 ELKWGTDEEKFITI-LGTRSVSHLRRVFDKYMTISGFQIE 220
>pdb|1BCY| Recombinant Rat Annexin V, T72k Mutant
Length = 319
Score = 25.0 bits (53), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ +G ++ + + DK MTISG +E
Sbjct: 182 ELKWGTDEEKFITI-LGTRSVSHLRRVFDKYMTISGFQIE 220
>pdb|1BCZ| Recombinant Rat Annexin V, T72s Mutant
Length = 319
Score = 25.0 bits (53), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ +G ++ + + DK MTISG +E
Sbjct: 182 ELKWGTDEEKFITI-LGTRSVSHLRRVFDKYMTISGFQIE 220
>pdb|1BC3| Recombinant Rat Annexin V, Triple Mutant (T72k, S144k, S228k)
Length = 319
Score = 25.0 bits (53), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 105 QAKTGVEMEALMSVSIGLLTIYDMVKAIDKSMTISGVMLE 144
+ K G + E +++ +G ++ + + DK MTISG +E
Sbjct: 182 ELKWGTDEEKFITI-LGTRSVSHLRRVFDKYMTISGFQIE 220
>pdb|2IF1| Human Translation Initiation Factor Eif1, Nmr, 29 Structures
Length = 126
Score = 24.3 bits (51), Expect = 7.0
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 99 YARVKTQAKTGVEMEALMSVSIGLLTIYD---MVKAIDKSMTISGVMLEHKSGGK 150
Y ++ Q + G + L +V G+ YD +VKA K +G ++EH G+
Sbjct: 43 YIHIRIQQRNG--RKTLTTVQ-GIADDYDKKKLVKAFKKKFACNGTVIEHPEYGE 94
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 821,353
Number of Sequences: 13198
Number of extensions: 27589
Number of successful extensions: 83
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 19
length of query: 158
length of database: 2,899,336
effective HSP length: 81
effective length of query: 77
effective length of database: 1,830,298
effective search space: 140932946
effective search space used: 140932946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)