BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645418|ref|NP_207592.1| molybdopterin biosynthesis
protein (mog) [Helicobacter pylori 26695]
(176 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DI6|A Chain A, 1.45 A Crystal Structure Of The Molybde... 178 4e-46
pdb|1JLJ|A Chain A, 1.6 Angstrom Crystal Structure Of The H... 133 1e-32
pdb|1IHC|A Chain A, X-Ray Structure Of Gephyrin N-Terminal ... 133 1e-32
pdb|1EAV|A Chain A, Crystal Structures Of Human Gephyrin An... 105 3e-24
pdb|1E3U|D Chain D, Mad Structure Of Oxa10 Class D Beta-Lac... 28 0.45
pdb|1K55|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 7.5... 26 2.2
pdb|1GLV| Glutathione Synthase (E.C.6.3.2.3) Loopless Mut... 26 2.9
pdb|1H5X|A Chain A, Crystal Structure Of The Class D Beta-L... 26 2.9
pdb|1GSA| Structure Of Glutathione Synthetase Complexed W... 26 2.9
pdb|1E4D|C Chain C, Structure Of Oxa10 Beta-Lactamase At Ph... 25 3.8
pdb|1K4F|B Chain B, Crystal Structure Of The Class D Beta-L... 25 3.8
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Com... 25 3.8
pdb|1E3U|B Chain B, Mad Structure Of Oxa10 Class D Beta-Lac... 25 3.8
pdb|1C7K|A Chain A, Crystal Structure Of The Zinc Protease ... 25 3.8
pdb|1FOF|A Chain A, Crystal Structure Of The Class D Beta-L... 25 3.8
pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens 25 6.5
pdb|1K4E|A Chain A, Crystal Structure Of The Class D Beta-L... 25 6.5
>pdb|1DI6|A Chain A, 1.45 A Crystal Structure Of The Molybdenumm Cofactor
Biosynthesis Protein Moga From Escherichia Coli
pdb|1DI7|A Chain A, 1.60 Angstrom Crystal Structure Of The Molybdenum Cofactor
Biosynthesis Protein Moga From Escherichia Coli
Length = 195
Score = 178 bits (451), Expect = 4e-46
Identities = 90/187 (48%), Positives = 125/187 (66%), Gaps = 12/187 (6%)
Query: 1 MQTIHIGVLSASDRASKGIYEDLSGKAIQEVLSEYLLNPLEFYYEIVADERDLIEKSLIK 60
M T+ IG++S SDRAS G+Y+D A++E L+ L P E ++ DE+ +IE++L +
Sbjct: 1 MATLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCE 60
Query: 61 MCDEYQCDLVVTTGGTGPALRDITPEATEKVCQKMLPGFGELMRMTSLKYVPTAILSRQS 120
+ DE C LV+TTGGTGPA RD+TP+AT V + +PGFGE MR SL +VPTAILSRQ
Sbjct: 61 LVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQV 120
Query: 121 AGIRNKSLIINLPGKPKSIRECLEAV------------FPAIPYCVDLILGNYMQVNEKN 168
IR ++LI+NLPG+PKSI+E LE V F ++PYC+ L+ G Y++ +
Sbjct: 121 GVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEV 180
Query: 169 IQAFRPK 175
+ AFRPK
Sbjct: 181 VAAFRPK 187
>pdb|1JLJ|A Chain A, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
pdb|1JLJ|B Chain B, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
pdb|1JLJ|C Chain C, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
Length = 189
Score = 133 bits (334), Expect = 1e-32
Identities = 70/164 (42%), Positives = 105/164 (63%), Gaps = 1/164 (0%)
Query: 4 IHIGVLSASDRASKGIYEDLSGKAIQEVLSE-YLLNPLEFYYEIVADERDLIEKSLIKMC 62
I +GVL+ SD + + ED SG +++++ + LL Y+IV DE + I+++LI C
Sbjct: 15 IRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWC 74
Query: 63 DEYQCDLVVTTGGTGPALRDITPEATEKVCQKMLPGFGELMRMTSLKYVPTAILSRQSAG 122
DE + +L++TTGGTG A RD+TPEAT++V ++ PG M M SL P +LSR G
Sbjct: 75 DEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCG 134
Query: 123 IRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNE 166
IR K+LIINLPG K +EC + + PA+P+ +DL+ ++V E
Sbjct: 135 IRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKE 178
>pdb|1IHC|A Chain A, X-Ray Structure Of Gephyrin N-Terminal Domain
Length = 188
Score = 133 bits (334), Expect = 1e-32
Identities = 70/164 (42%), Positives = 105/164 (63%), Gaps = 1/164 (0%)
Query: 4 IHIGVLSASDRASKGIYEDLSGKAIQEVLSE-YLLNPLEFYYEIVADERDLIEKSLIKMC 62
I +GVL+ SD + + ED SG +++++ + LL Y+IV DE + I+++LI C
Sbjct: 15 IRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWC 74
Query: 63 DEYQCDLVVTTGGTGPALRDITPEATEKVCQKMLPGFGELMRMTSLKYVPTAILSRQSAG 122
DE + +L++TTGGTG A RD+TPEAT++V ++ PG M M SL P +LSR G
Sbjct: 75 DEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCG 134
Query: 123 IRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNE 166
IR K+LIINLPG K +EC + + PA+P+ +DL+ ++V E
Sbjct: 135 IRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKE 178
>pdb|1EAV|A Chain A, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|B Chain B, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|C Chain C, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|D Chain D, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|E Chain E, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|F Chain F, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|G Chain G, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|H Chain H, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
Length = 162
Score = 105 bits (262), Expect = 3e-24
Identities = 63/155 (40%), Positives = 86/155 (54%), Gaps = 3/155 (1%)
Query: 6 IGVLSASDRASKGIYEDLSGKAIQEVL---SEYLLNPLEFYYEIVADERDLIEKSLIKMC 62
+ +L+ SD S G D SG V+ SE L +V DE + I+ L K
Sbjct: 8 VAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWS 67
Query: 63 DEYQCDLVVTTGGTGPALRDITPEATEKVCQKMLPGFGELMRMTSLKYVPTAILSRQSAG 122
D + DL++T GGTG RD+TPEAT+KV ++ PG + SLK P A LSR +AG
Sbjct: 68 DVDEXDLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVXXQESLKITPFAXLSRSAAG 127
Query: 123 IRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLI 157
IR +LIIN PG P ++ EC EA+ PA+ + + I
Sbjct: 128 IRGSTLIINXPGNPNAVAECXEALLPALKHALKQI 162
>pdb|1E3U|D Chain D, Mad Structure Of Oxa10 Class D Beta-Lactamase
Length = 246
Score = 28.5 bits (62), Expect = 0.45
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 111 VPTAILSRQSAGIRNKSLIINLPGKPKSIRE 141
+P AI+ ++ I+N+ + PGKP+++++
Sbjct: 51 IPNAIIGLETGVIKNEHQVFKWPGKPRAMKQ 81
>pdb|1K55|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 7.5
pdb|1K55|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 7.5
Length = 247
Score = 26.2 bits (56), Expect = 2.2
Identities = 9/41 (21%), Positives = 24/41 (57%)
Query: 101 ELMRMTSLKYVPTAILSRQSAGIRNKSLIINLPGKPKSIRE 141
E + ++ +P AI+ ++ I+N+ + GKP+++++
Sbjct: 42 EYLPASTFXKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQ 82
>pdb|1GLV| Glutathione Synthase (E.C.6.3.2.3) Loopless Mutant With Residues
226 - 241 Replaced By Gly-Gly-Gly
Length = 303
Score = 25.8 bits (55), Expect = 2.9
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 5/49 (10%)
Query: 127 SLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNEKNIQAFRPK 175
+LI+N KP+S+R+C E +F A + DL + N+ ++AF K
Sbjct: 110 TLIVN---KPQSLRDCNEKLFTA--WFSDLTPETLVTRNKAQLKAFWEK 153
>pdb|1H5X|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
pdb|1H5X|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
pdb|1H8Y|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Y|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Z|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
pdb|1H8Z|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Length = 247
Score = 25.8 bits (55), Expect = 2.9
Identities = 8/31 (25%), Positives = 21/31 (66%)
Query: 111 VPTAILSRQSAGIRNKSLIINLPGKPKSIRE 141
+P+AI+ ++ I+N+ + GKP+++++
Sbjct: 52 IPSAIIGLETGVIKNEHQVFKWDGKPRAMKQ 82
>pdb|1GSA| Structure Of Glutathione Synthetase Complexed With Adp And
Glutathione
pdb|1GSH| Structure Of Escherichia Coli Glutathione Synthetase At Ph 7.5
pdb|2GLT| Structure Of Escherichia Coli Glutathione Synthetase At Ph 6.0
Length = 316
Score = 25.8 bits (55), Expect = 2.9
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 5/49 (10%)
Query: 127 SLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNEKNIQAFRPK 175
+LI+N KP+S+R+C E +F A + DL + N+ ++AF K
Sbjct: 110 TLIVN---KPQSLRDCNEKLFTA--WFSDLTPETLVTRNKAQLKAFWEK 153
>pdb|1E4D|C Chain C, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1E4D|D Chain D, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1K55|A Chain A, Oxa 10 Class D Beta-Lactamase At Ph 7.5
pdb|1K55|B Chain B, Oxa 10 Class D Beta-Lactamase At Ph 7.5
pdb|1K57|B Chain B, Oxa 10 Class D Beta-Lactamase At Ph 6.0
pdb|1K56|B Chain B, Oxa 10 Class D Beta-Lactamase At Ph 6.5
pdb|1E4D|B Chain B, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1K56|A Chain A, Oxa 10 Class D Beta-Lactamase At Ph 6.5
pdb|1E4D|A Chain A, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1K57|A Chain A, Oxa 10 Class D Beta-Lactamase At Ph 6.0
pdb|1K54|B Chain B, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1K54|A Chain A, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
Acid
Length = 246
Score = 25.4 bits (54), Expect = 3.8
Identities = 8/31 (25%), Positives = 20/31 (63%)
Query: 111 VPTAILSRQSAGIRNKSLIINLPGKPKSIRE 141
+P AI+ ++ I+N+ + GKP+++++
Sbjct: 51 IPNAIIGLETGVIKNEHQVFKWDGKPRAMKQ 81
>pdb|1K4F|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10 At
1.6 A Resolution
pdb|1K4F|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10 At
1.6 A Resolution
Length = 248
Score = 25.4 bits (54), Expect = 3.8
Identities = 8/31 (25%), Positives = 20/31 (63%)
Query: 111 VPTAILSRQSAGIRNKSLIINLPGKPKSIRE 141
+P AI+ ++ I+N+ + GKP+++++
Sbjct: 53 IPNAIIGLETGVIKNEHQVFKWDGKPRAMKQ 83
>pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 391
Score = 25.4 bits (54), Expect = 3.8
Identities = 11/36 (30%), Positives = 18/36 (49%)
Query: 41 EFYYEIVADERDLIEKSLIKMCDEYQCDLVVTTGGT 76
E+YYE++ ++ + L C EY D + GT
Sbjct: 202 EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 237
>pdb|1E3U|B Chain B, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1E3U|A Chain A, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1K57|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 6.0
pdb|1K54|D Chain D, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1EWZ|A Chain A, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1EWZ|B Chain B, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1E3U|C Chain C, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1K57|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 6.0
pdb|1K56|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 6.5
pdb|1EWZ|C Chain C, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1K54|C Chain C, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1EWZ|D Chain D, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
Length = 246
Score = 25.4 bits (54), Expect = 3.8
Identities = 8/31 (25%), Positives = 20/31 (63%)
Query: 111 VPTAILSRQSAGIRNKSLIINLPGKPKSIRE 141
+P AI+ ++ I+N+ + GKP+++++
Sbjct: 51 IPNAIIGLETGVIKNEHQVFKWDGKPRAMKQ 81
>pdb|1C7K|A Chain A, Crystal Structure Of The Zinc Protease
pdb|1KUH| Zinc Protease From Streptomyces Caespitosus
Length = 132
Score = 25.4 bits (54), Expect = 3.8
Identities = 19/77 (24%), Positives = 32/77 (40%), Gaps = 6/77 (7%)
Query: 16 SKGIYEDLSGKAIQEVLSEYLLNPLEFYYEIVADERDLIEKSLIKMCDEYQ--CDLVVTT 73
S+G Y G + +Y N + A E + + + D YQ C +++
Sbjct: 50 SRGSYAQTDGHGRGYIFLDYQQNQQYDSTRVTAHETGHV----LGLPDHYQGPCSELMSG 105
Query: 74 GGTGPALRDITPEATEK 90
GG GP+ + P A E+
Sbjct: 106 GGPGPSCTNPYPNAQER 122
>pdb|1FOF|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
pdb|1FOF|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
Length = 246
Score = 25.4 bits (54), Expect = 3.8
Identities = 8/31 (25%), Positives = 20/31 (63%)
Query: 111 VPTAILSRQSAGIRNKSLIINLPGKPKSIRE 141
+P AI+ ++ I+N+ + GKP+++++
Sbjct: 52 IPNAIIGLETGVIKNEHQVFKWDGKPRAMKQ 82
>pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens
Length = 241
Score = 24.6 bits (52), Expect = 6.5
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 103 MRMTSLKYVPTAILSR---QSAGIRNKSLIINLPGKPK 137
+R+ S+++ P A +R ++ GIR++ + INL KP+
Sbjct: 24 IRIYSMRFCPFAERTRLVLKAKGIRHEVININLKNKPE 61
>pdb|1K4E|A Chain A, Crystal Structure Of The Class D Beta-Lactamases Oxa-10
Determined By Mad Phasing With Selenomethionine
pdb|1K4E|B Chain B, Crystal Structure Of The Class D Beta-Lactamases Oxa-10
Determined By Mad Phasing With Selenomethionine
Length = 248
Score = 24.6 bits (52), Expect = 6.5
Identities = 8/31 (25%), Positives = 19/31 (60%)
Query: 111 VPTAILSRQSAGIRNKSLIINLPGKPKSIRE 141
+P AI+ ++ I+N+ + GKP++ ++
Sbjct: 53 IPNAIIGLETGVIKNEHQVFKWDGKPRAXKQ 83
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 985,471
Number of Sequences: 13198
Number of extensions: 37777
Number of successful extensions: 120
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 17
length of query: 176
length of database: 2,899,336
effective HSP length: 82
effective length of query: 94
effective length of database: 1,817,100
effective search space: 170807400
effective search space used: 170807400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)